BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome CDS (ITAG release 4.0)
           34,075 sequences; 34,993,605 total letters



Query= Untitled_sequence

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc01g096140.3.1                                                    204     1e-52


>Solyc01g096140.3.1 
Length=1497

 Score = 204 bits (110),  Expect = 1e-52
 Identities = 110/110 (100%), Gaps = 0/110 (0%)
 Strand=Plus/Plus

Query  1    TGCAGCAACCTTTTCTCGGTTTATACCTACAATAAAAGCGCGATTTGACTATGGTGCAAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  477  TGCAGCAACCTTTTCTCGGTTTATACCTACAATAAAAGCGCGATTTGACTATGGTGCAAT  536

Query  61   GATCTTTATCCTTACCTTCAGCTTAGTGTCAGTGTCAGGCTATCGCGTTG  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  537  GATCTTTATCCTTACCTTCAGCTTAGTGTCAGTGTCAGGCTATCGCGTTG  586



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 3013468040


  Database: Tomato Genome CDS (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 34,993,605
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5