BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: S. pimpinellifolium WGS Contigs (cshl_1.00) 309,695 sequences; 688,858,252 total letters Query= Untitled_sequence Length=261 Score E Sequences producing significant alignments: (Bits) Value contig:unspecified:6472478:1:2565:1contig 6472478 313 8e-84 contig:unspecified:6660061:1:644:1contig 6660061 204 5e-51 contig:unspecified:6660062:1:642:1contig 6660062 198 2e-49 contig:unspecified:6699295:1:4500:1contig 6699295 169 2e-40 contig:unspecified:6660028:1:1166:1contig 6660028 169 2e-40 contig:unspecified:5445320:1:5121:1contig 5445320 91.6 4e-17 >contig:unspecified:6472478:1:2565:1 contig 6472478 Length=2565 Score = 313 bits (169), Expect = 8e-84 Identities = 171/172 (99%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 90 AGCCCTCTTGAATAGAGTATTTGATTATGATGAGTGGCAACCTTCTCAAACAGTCACAAT 149 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1250 AGCCCTCTTGAATAGAGTATTTGATTATGATGAGTGGCAACCTTCTCAAATAGTCACAAT 1191 Query 150 GGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTATGTGATCATTTTAGCCTTTGT 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1190 GGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTATGTGATCATTTTAGCCTTTGT 1131 Query 210 CTTACTTTCAATGGTTTGGCTTAAAAATCTCGATTTACTATCTACTATTTGA 261 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 CTTACTTTCAATGGTTTGGCTTAAAAATCTCGATTTACTATCTACTATTTGA 1079 Score = 169 bits (91), Expect = 2e-40 Identities = 91/91 (100%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1 ATGAAAGAAGAGACAATCTATAAGGCCACAGAGTCGTTTGATGAGGCAAAGAAGCTCAAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1707 ATGAAAGAAGAGACAATCTATAAGGCCACAGAGTCGTTTGATGAGGCAAAGAAGCTCAAT 1648 Query 61 CAAGGTGGATTTGACACAATTTATGAGGTAG 91 ||||||||||||||||||||||||||||||| Sbjct 1647 CAAGGTGGATTTGACACAATTTATGAGGTAG 1617 >contig:unspecified:6660061:1:644:1 contig 6660061 Length=644 Score = 204 bits (110), Expect = 5e-51 Identities = 158/179 (88%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 91 GCCCTCTTGAATAGAGTATTTGATTATGATGAGTGGCAAC---------C--TTCTCAAA 139 |||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 380 GCCCTCTTGAATAGAGTATTTGATTATGATGAGTGGCAACATTGATGCCCTATTCTCAAA 439 Query 140 CAGTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTATGTGATCATTT 199 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 440 TAGTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTGTGTGATTATTT 499 Query 200 TAGCCTTTGTCTTACTTTCAATGGTTTGGCTTAAAAATCTCGATTTACTATCTACTATT 258 || |||||||| |||| |||||||||| ||||||||||||| ||| |||||||||||| Sbjct 500 TAACCTTTGTCATACTATCAATGGTTTAGCTTAAAAATCTCATTTTGCTATCTACTATT 558 >contig:unspecified:6660062:1:642:1 contig 6660062 Length=642 Score = 198 bits (107), Expect = 2e-49 Identities = 157/179 (88%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 91 GCCCTCTTGAATAGAGTATTTGATTATGATGAGTGGCAACC-----------TTCTCAAA 139 |||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 378 GCCCACTTGAATAGAGTATTTGATTATGATGAGTGGCAACCTTGATGCCCTATTCTCAAA 437 Query 140 CAGTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTATGTGATCATTT 199 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 438 TAGTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTGTGTGATTATTT 497 Query 200 TAGCCTTTGTCTTACTTTCAATGGTTTGGCTTAAAAATCTCGATTTACTATCTACTATT 258 || |||||||| |||| |||||||||| ||||||||||||| ||| |||||||||||| Sbjct 498 TAACCTTTGTCATACTATCAATGGTTTAGCTTAAAAATCTCATTTTGCTATCTACTATT 556 >contig:unspecified:6699295:1:4500:1 contig 6699295 Length=4500 Score = 169 bits (91), Expect = 2e-40 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 141 AGTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTATGTGATCATTTT 200 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 3 AGTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTGTGTGATTATTTT 62 Query 201 AGCCTTTGTCTTACTTTCAATGGTTTGGCTTAAAAATCTCGATTTACTATCTACTATT 258 | |||||||| |||| |||||||||| ||||||||||||| ||| |||||||||||| Sbjct 63 AACCTTTGTCATACTATCAATGGTTTAGCTTAAAAATCTCATTTTGCTATCTACTATT 120 >contig:unspecified:6660028:1:1166:1 contig 6660028 Length=1166 Score = 169 bits (91), Expect = 2e-40 Identities = 111/121 (92%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 141 AGTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTATGTGATCATTTT 200 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1164 AGTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTGTGTGATTATTTT 1105 Query 201 AGCCTTTGTCTTACTTTCAATGGTTTGGCTTAAAAATCTCGATTTACTATCTACTATTTG 260 | |||||||| |||| |||||||||| ||||||||||||| ||| |||||||||||| | Sbjct 1104 AACCTTTGTCATACTATCAATGGTTTAGCTTAAAAATCTCATTTTGCTATCTACTATTAG 1045 Query 261 A 261 | Sbjct 1044 A 1044 >contig:unspecified:5445320:1:5121:1 contig 5445320 Length=5121 Score = 91.6 bits (49), Expect = 4e-17 Identities = 134/173 (77%), Gaps = 14/173 (8%) Strand=Plus/Minus Query 93 CCTCTTGAATAGAGTATTTGATTATGATGAGTGGCAACCTT------C---T--CAAACA 141 ||||||| ||||||||||||||||||||||||| |||||| | | | || | Sbjct 1333 CCTCTTGCATAGAGTATTTGATTATGATGAGTGATAACCTTGGCGCCCTATTCCCGAATA 1274 Query 142 GTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTATGTGATCATTT-T 200 ||||| |||||||||| ||||||| |||| ||||||||||||| | || || |||| | Sbjct 1273 GTCAC-ATGGAGTTTGCTGGAATTCATCTGAATTCTTATCAAATATGTGCTATTATTTCT 1215 Query 201 AGCCTTTGTCTTACTTTCAATGGTTTGGCTTAAAAATCTCGATTTACTATCTA 253 | |||| || ||||| ||| |||||||||| ||||||| ||| || |||| Sbjct 1214 ACCCTTA-TCATACTTCCAACCGTTTGGCTTAGAAATCTCCGTTTGCTGTCTA 1163 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 159236177958 Database: S. pimpinellifolium WGS Contigs (cshl_1.00) Posted date: Mar 21, 2024 3:31 PM Number of letters in database: 688,858,252 Number of sequences in database: 309,695 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5