BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome CDS (ITAG release 4.0)
           34,075 sequences; 34,993,605 total letters



Query= AT1G72830.1

Length=1023
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc12g009050.3.1                                                    89.8    3e-17
Solyc08g062210.3.1                                                    73.1    3e-12


>Solyc12g009050.3.1 
Length=762

 Score = 89.8 bits (48),  Expect = 3e-17
 Identities = 142/189 (75%), Gaps = 0/189 (0%)
 Strand=Plus/Plus

Query  538  CCAGTCTTTGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCT  597
            ||| ||| ||| ||||| || || ||||| |  ||  | ||| ||||||||  |||||| 
Sbjct  352  CCAATCTATGTTAATGCAAAACAGTACCATGGGATCCTAAGGCGGAGACAGATACGTGCA  411

Query  598  AAGCTTGAGGCTCAAAACAAACTAATCAGAGCCCGTAAGCCCTATCTTCATGAGTCTCGA  657
            |||||||||||||| ||||||||  ||| |    | ||||| |||||||||||||| |||
Sbjct  412  AAGCTTGAGGCTCAGAACAAACTTGTCAAAAATAGAAAGCCATATCTTCATGAGTCACGA  471

Query  658  CATGTTCATGCTCTTAAAAGGCCAAGAGGATCTGGTGGAAGATTCCTAAACACCAAAAAA  717
            ||| |||||||  | || ||    ||||| || |||||| | ||||| | | | || |||
Sbjct  472  CATCTTCATGCAGTGAACAGAGTTAGAGGGTCGGGTGGACGTTTCCTCAGCTCAAAGAAA  531

Query  718  CTTCTTCAA  726
             ||| ||||
Sbjct  532  GTTCATCAA  540


>Solyc08g062210.3.1 
Length=978

 Score = 73.1 bits (39),  Expect = 3e-12
 Identities = 95/123 (77%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  546  TGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAGCTTGA  605
            ||| |||||||| ||||||   || ||| | |  ||| |||||   ||||| ||||| ||
Sbjct  558  TGTGAATGCGAAACAATACAGTGCTATTCTCAAAAGGCGACAGGTCCGTGCCAAGCTAGA  617

Query  606  GGCTCAAAACAAACTAATCAGAGCCCGTAAGCCCTATCTTCATGAGTCTCGACATGTTCA  665
            ||||||||| || ||  ||| || | | ||||| |||||||| ||||||||||||  |||
Sbjct  618  GGCTCAAAATAAGCTTGTCAAAGACAGAAAGCCATATCTTCACGAGTCTCGACATCGTCA  677

Query  666  TGC  668
            |||
Sbjct  678  TGC  680



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 34073446540


  Database: Tomato Genome CDS (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 34,993,605
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5