BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome cDNA (ITAG release 2.40)
           34,725 sequences; 41,981,568 total letters



Query= Untitled_sequence

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc04g039760.1Ycf2 (AHRD V1 ***- D2SXY2_9MAGN); contains Interp...  148     3e-35
Solyc09g056370.1ORF124 (AHRD V1 *-*- A4QMB9_PINKO)                    137     5e-32
Solyc12g062450.1Unknown Protein (AHRD V1)                             121     6e-27


>Solyc04g039760.1 Ycf2 (AHRD V1 ***- D2SXY2_9MAGN); contains Interpro domain(s) 
 IPR008543  Chloroplast Ycf2 
Length=1554

 Score = 148 bits (80),  Expect = 3e-35
 Identities = 156/188 (83%), Gaps = 24/188 (13%)
 Strand=Plus/Minus

Query  78   GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG  137
            |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct  188  GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGTGTAGTAATCGACAAAATGCTTTGGG  129

Query  138  GAGTTGAAAATAAGCATAGATCCGGA---GA---T-----T----CC-------C--GAA  173
            ||||||||||||||||||||||||||   ||   |     |    ||       |  |||
Sbjct  128  GAGTTGAAAATAAGCATAGATCCGGAAATGAAAATAAGCATAGATCCAGAAATTCTAGAA  69

Query  174  TAGGGCAACCTTTCGAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAAC  233
            ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||  || 
Sbjct  68   TAGGGCAACCTTTCGAACTGCTGTTGAATCCATGGGCAGGAAAGAGACAACCTGGAAAAT  9

Query  234  TGAAACAT  241
            ||||||||
Sbjct  8    TGAAACAT  1


>Solyc09g056370.1 ORF124 (AHRD V1 *-*- A4QMB9_PINKO)
Length=273

 Score = 137 bits (74),  Expect = 5e-32
 Identities = 76/77 (99%), Gaps = 0/77 (0%)
 Strand=Plus/Minus

Query  78   GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG  137
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  77   GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGATGAAATGCTTCGGG  18

Query  138  GAGTTGAAAATAAGCAT  154
            |||||||||||||||||
Sbjct  17   GAGTTGAAAATAAGCAT  1


>Solyc12g062450.1 Unknown Protein (AHRD V1)
Length=384

 Score = 121 bits (65),  Expect = 6e-27
 Identities = 83/92 (90%), Gaps = 0/92 (0%)
 Strand=Plus/Minus

Query  179  CAACCTTTCGAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAA  238
            ||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct  250  CAAGCTTTCGAACTGCTGTTGAATCCATGGGCAGGCAAGAGAGAACCAGGCGAACTGAAA  191

Query  239  CATCTTAGTAGCCAGAGGAAAAAAAAAAAAAA  270
             ||||| ||||||| ||||||| ||| |||||
Sbjct  190  GATCTTTGTAGCCAAAGGAAAAGAAAGAAAAA  159



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 16335822696


  Database: Tomato Genome cDNA (ITAG release 2.40)
    Posted date:  Mar 21, 2024  3:33 PM
  Number of letters in database: 41,981,568
  Number of sequences in database:  34,725



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5