BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome CDS (ITAG release 4.0) 34,075 sequences; 34,993,605 total letters Query= Untitled_sequence Length=627 Score E Sequences producing significant alignments: (Bits) Value Solyc06g008590.3.1 1158 0.0 Solyc06g053830.3.1 259 1e-68 Solyc09g083290.3.1 246 1e-64 Solyc01g097290.4.1 220 7e-57 Solyc03g120500.4.1 121 7e-27 Solyc09g065850.4.1 117 9e-26 Solyc04g076850.3.1 117 9e-26 Solyc06g008580.3.1 102 3e-21 Solyc12g007230.2.1 93.5 2e-18 Solyc09g083280.3.1 87.9 7e-17 Solyc03g120390.3.1 84.2 9e-16 Solyc12g096980.3.1 82.4 3e-15 Solyc06g084070.3.1 82.4 3e-15 Solyc09g064530.3.1 78.7 4e-14 Solyc04g054280.2.1 76.8 2e-13 Solyc03g120380.3.1 73.1 2e-12 >Solyc06g008590.3.1 Length=627 Score = 1158 bits (627), Expect = 0.0 Identities = 627/627 (100%), Gaps = 0/627 (0%) Strand=Plus/Plus Query 1 ATGAGTAGTAATAAGTTGGATTTTGAGGAGACAGAATTAAGGCTAGGGTTGCCTGGTGGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGTAGTAATAAGTTGGATTTTGAGGAGACAGAATTAAGGCTAGGGTTGCCTGGTGGA 60 Query 61 GCAAGAAAAAATGTTTATGGTGATAATGATACTTGTAATGTTAATGGTAAAAGAGGCTTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCAAGAAAAAATGTTTATGGTGATAATGATACTTGTAATGTTAATGGTAAAAGAGGCTTT 120 Query 121 GTAGATTTGAAGCTTAATCTTTCTTCTGATATTAACAACATCAAGAATTCAACACACAAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTAGATTTGAAGCTTAATCTTTCTTCTGATATTAACAACATCAAGAATTCAACACACAAA 180 Query 181 ACCCCAGCTGCCAAGGCACAAGTTGTGGGTTGGCCGCCCGTAAGGTCCTTTCGAAAGAAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACCCCAGCTGCCAAGGCACAAGTTGTGGGTTGGCCGCCCGTAAGGTCCTTTCGAAAGAAT 240 Query 241 ATTTTGACTTCTCAAAAGCTTGATCGAGAGAATGATAATATTTTGGTGAAGGTGAGCATG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATTTTGACTTCTCAAAAGCTTGATCGAGAGAATGATAATATTTTGGTGAAGGTGAGCATG 300 Query 301 GATGGTGCACCTTACCTTAGGAAAGTGGACTTAAACATGTACAAGAGTTATCAAGAATTA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GATGGTGCACCTTACCTTAGGAAAGTGGACTTAAACATGTACAAGAGTTATCAAGAATTA 360 Query 361 TTTGATGCCTTAACCAAGATGTTCAATTCCTTCACTATTGTCCAAGGAATGAAAGATTTC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTTGATGCCTTAACCAAGATGTTCAATTCCTTCACTATTGTCCAAGGAATGAAAGATTTC 420 Query 421 ATGCATGAGGGGAAACTGATGGACCTTTTGAATAGTTCTGATTATGTTCCTACCTATGAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ATGCATGAGGGGAAACTGATGGACCTTTTGAATAGTTCTGATTATGTTCCTACCTATGAA 480 Query 481 GACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCATGGGGGATGTTTGTTGATTCT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCATGGGGGATGTTTGTTGATTCT 540 Query 541 TGCAAACGCTTGCGCATCATGAAAGGAACTGAAGCAATAGGACTAGCACCAAGGGCTATG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TGCAAACGCTTGCGCATCATGAAAGGAACTGAAGCAATAGGACTAGCACCAAGGGCTATG 600 Query 601 GAGAAGTGCAAGAACAGAAATGGATGA 627 ||||||||||||||||||||||||||| Sbjct 601 GAGAAGTGCAAGAACAGAAATGGATGA 627 >Solyc06g053830.3.1 Length=657 Score = 259 bits (140), Expect = 1e-68 Identities = 281/348 (81%), Gaps = 13/348 (4%) Strand=Plus/Plus Query 282 TTTGGTGAAGGTGAGCATGGATGGTGCACCTTACCTTAGGAAAGTGGACTTAAACATGTA 341 ||| |||||||| |||||||||||||||||||||| | || || || ||||| ||||| Sbjct 304 TTT-GTGAAGGTTTCCATGGATGGTGCACCTTACCTTCGTAAGGTAGATTTAAAGATGTA 362 Query 342 CAAGAGTTATCAAGAATTATTTGATGCCTTAACCAAGATGTTCAATTCCTTCACTAT--- 398 ||||||||| ||| || | | | || | || ||||| ||||| | ||||||||||| Sbjct 363 CAAGAGTTACCAACAACTCTCTCATTCTTTGACCAACATGTTTAGCTCCTTCACTATGGG 422 Query 399 ------T--GT-CCAAGGAATGAAAGATTTCATGCATGAGGGGAAACTGATGGACCTTTT 449 | || ||||||||||| |||||| ||| ||||| ||||||||||||| | | Sbjct 423 TAATTATGGGTCCCAAGGAATGATAGATTTTATGAATGAGAGGAAACTGATGGATGTCCT 482 Query 450 GAATAGTTCTGATTATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGG 509 ||||||||||| ||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 483 CAATAGTTCTGACTATGTACCAACCTATGAAGATAAGGATGGGGATTGGATGCTTGTTGG 542 Query 510 AGATGTCCCATGGGGGATGTTTGTTGATTCTTGCAAACGCTTGCGCATCATGAAAGGAAC 569 |||||| || ||| |||||||||||||| ||||| || || ||||| ||||||||| | Sbjct 543 AGATGTACCTTGGCAAATGTTTGTTGATTCATGCAAGCGTTTACGCATAATGAAAGGATC 602 Query 570 TGAAGCAATAGGACTAGCACCAAGGGCTATGGAGAAGTGCAAGAACAG 617 ||||| || |||||||||||||| || |||||||| ||||||||||| Sbjct 603 AGAAGCTATTGGACTAGCACCAAGAGCCATGGAGAAATGCAAGAACAG 650 >Solyc09g083290.3.1 Length=711 Score = 246 bits (133), Expect = 1e-64 Identities = 269/334 (81%), Gaps = 12/334 (4%) Strand=Plus/Plus Query 296 GCATGGATGGTGCACCTTACCTTAGGAAAGTGGACTTAAACATGTACAAGAGTTATCAAG 355 |||||||||||||||||||||| | || || || || || |||||||| ||||| |||| Sbjct 371 GCATGGATGGTGCACCTTACCTACGTAAGGTTGATTTGAAAATGTACAAAAGTTACCAAG 430 Query 356 AATTATTTGATGCCTTAACCAAGATGTTCAATTCCTT--C-ACT----A-T-T--GT-CC 403 || | | |||||| || | |||||||| | ||||| | | | | | | || || Sbjct 431 AACTTTCTGATGCTTTGGCTAAGATGTTTAGCTCCTTTACTAATGGAAATTATGGGTCCC 490 Query 404 AAGGAATGAAAGATTTCATGCATGAGGGGAAACTGATGGACCTTTTGAATAGTTCTGATT 463 ||||||||| |||||| ||| ||||| | ||| ||||||| || | || |||||||| | Sbjct 491 AAGGAATGATAGATTTTATGAATGAGAGCAAATTGATGGATCTCCTTAACAGTTCTGAAT 550 Query 464 ATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCATGGG 523 |||| || ||||||||||| |||||||| ||||||||||||||||||||||| || |||| Sbjct 551 ATGTACCAACCTATGAAGATAAAGATGGAGATTGGATGCTTGTTGGAGATGTACCTTGGG 610 Query 524 GGATGTTTGTTGATTCTTGCAAACGCTTGCGCATCATGAAAGGAACTGAAGCAATAGGAC 583 ||||||||||||||| ||||| || || ||||| ||||||||| | ||||| || |||| Sbjct 611 AGATGTTTGTTGATTCATGCAAGCGTTTACGCATAATGAAAGGATCAGAAGCTATTGGAC 670 Query 584 TAGCACCAAGGGCTATGGAGAAGTGCAAGAACAG 617 | |||||||| ||||||||||| ||||||| ||| Sbjct 671 TTGCACCAAGAGCTATGGAGAAATGCAAGAGCAG 704 >Solyc01g097290.4.1 Length=756 Score = 220 bits (119), Expect = 7e-57 Identities = 276/350 (79%), Gaps = 17/350 (5%) Strand=Plus/Plus Query 282 TTTGGTGAAGGTGAGCATGGATGGTGCACCTTACCTTA-GGAAAGTGGACTTAAACATGT 340 ||| ||||| || || | || |||||||| ||| ||| | ||||||||||| || |||| Sbjct 403 TTT-GTGAAAGTTAGTGTTGACGGTGCACCATAC-TTACGTAAAGTGGACTTGAAGATGT 460 Query 341 ACAAGAGTTATCAAGAATTATTTGATGC-CTTAACCAAGATGTTCAATTC-CTT-C-ACT 396 |||| ||||| ||| || | | |||||| ||| ||| ||||| | || || | | | Sbjct 461 ACAAAAGTTACCAACAACTCTCTGATGCACTT-GGCAAAATGTTTAGCTCTTTTACTATT 519 Query 397 ----ATTGT----C-CAAGGAATGAAAGATTTCATGCATGAGGGGAAACTGATGGACCTT 447 ||||| | |||||| | || ||||||||| ||||| | ||| |||| ||||| Sbjct 520 GGAAATTGTGGGACTCAAGGATTTAAGGATTTCATGAATGAGAGCAAATTGATAGACCTC 579 Query 448 TTGAATAGTTCTGATTATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTT 507 |||||| |||| || ||||| || || ||||||||||||||||||||||||||||||||| Sbjct 580 TTGAATGGTTCAGACTATGTACCAACTTATGAAGACAAAGATGGTGATTGGATGCTTGTT 639 Query 508 GGAGATGTCCCATGGGGGATGTTTGTTGATTCTTGCAAACGCTTGCGCATCATGAAAGGA 567 || ||||| || |||| ||||||||||||||| |||||||| || || || ||||||||| Sbjct 640 GGTGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAACGTTTACGGATAATGAAAGGA 699 Query 568 ACTGAAGCAATAGGACTAGCACCAAGGGCTATGGAGAAGTGCAAGAACAG 617 | ||||| || || ||||||||||| || ||||||| ||||||||||| Sbjct 700 TCAGAAGCTATTGGGCTAGCACCAAGAGCAGTGGAGAAATGCAAGAACAG 749 >Solyc03g120500.4.1 Length=990 Score = 121 bits (65), Expect = 7e-27 Identities = 143/181 (79%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 437 TGATGGACCTTTTGAATAGTTCTGATTATGTTCCTACCTATGAAGACAAAGATGGTGATT 496 ||||||| ||| | ||| ||||||| ||||| | || ||||| ||||| |||||||||| Sbjct 803 TGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATT 862 Query 497 GGATGCTTGTTGGAGATGTCCCATGGGGGATGTTTGTTGATTCTTGCAAACGCTTGCGCA 556 ||||||| ||||| ||||| || |||| |||||| | || || ||||| | ||||| | Sbjct 863 GGATGCTAGTTGGCGATGTTCCTTGGGAGATGTTCATAGACTCATGCAAGAGATTGCGGA 922 Query 557 TCATGAAAGGAACTGA-A-GCAATAGGACTAGCACCAAGGGCTATGGAGAAGTGCAAGAA 614 ||||||| | | || | | ||||| || ||||| |||||||| || | ||||||||||| Sbjct 923 TCATGAA-G-AGCTCAGAGGCAATTGGGCTAGCTCCAAGGGCCATAAATAAGTGCAAGAA 980 Query 615 C 615 | Sbjct 981 C 981 >Solyc09g065850.4.1 Length=558 Score = 117 bits (63), Expect = 9e-26 Identities = 114/139 (82%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 451 AATAGTTCTGATTATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGA 510 ||| | |||||||||| || || ||||||||||| ||||||||||||||||||||||| Sbjct 412 AATGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTTGTTGGT 471 Query 511 GATGTCCCATGGGGGATGTTTGTTGATTCTTGCAAACG-CTTGCGCATCATGAAAGGAAC 569 ||||| ||||||| ||||||| | |||||||||| | ||| | || || |||||| | Sbjct 472 GATGTACCATGGGAGATGTTTATAAGTTCTTGCAAAAGGCTTA-GAATTATCAAAGGATC 530 Query 570 TGAAGCAATAGGACTAGCA 588 |||||| | ||| |||||| Sbjct 531 TGAAGCTAAAGGTCTAGCA 549 >Solyc04g076850.3.1 Length=1050 Score = 117 bits (63), Expect = 9e-26 Identities = 132/166 (80%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 457 TCTGATTATGTTCCT-ACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGT 515 ||||| |||| |||| || || ||||| || ||||| || ||||||||||| || ||||| Sbjct 883 TCTGAGTATG-TCCTCACTTACGAAGATAAGGATGGGGACTGGATGCTTGTCGGTGATGT 941 Query 516 CCCATGGGGGATGTTTGTTGATTCTTGCAAACGCTTGCGCATCATGAAAGGAACTGAAGC 575 ||| |||| ||||||| | ||| |||||||| | ||| | ||||||||||| | || || Sbjct 942 CCCCTGGGAGATGTTTATCGATACTTGCAAAAGGTTGAGGATCATGAAAGGTTCAGATGC 1001 Query 576 AATAGGACTAGCACCAAGGGCTATGGAGAAGTGCAAGAACAGAAAT 621 || || || || |||||||||||||| ||||| || ||||||| Sbjct 1002 CATTGGCCTGGCCCCAAGGGCTATGGAAAAGTGTCGGAGCAGAAAT 1047 >Solyc06g008580.3.1 Length=573 Score = 102 bits (55), Expect = 3e-21 Identities = 92/110 (84%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 457 TCTGATTATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTC 516 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 433 TCTGATTATGTATTAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTA 492 Query 517 CCATGGGGGATGTTTGTTGATTCTTGCAAACG-CTTGCGCATCATGAAAG 565 |||| || |||||| || |||||| ||| | ||| | |||||||||| Sbjct 493 CCATTGGATATGTTTATTAGTTCTTGTAAAAGGCTTA-GAATCATGAAAG 541 >Solyc12g007230.2.1 Length=888 Score = 93.5 bits (50), Expect = 2e-18 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 457 TCTGATTATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTC 516 ||||| || | || ||| ||||||||||| || ||||||||||||||||| || |||||| Sbjct 724 TCTGAATACGCTCTTACTTATGAAGACAAGGACGGTGATTGGATGCTTGTCGGTGATGTC 783 Query 517 CCATGGGGGATGTTTGTTGATTCTTGCAA-ACGCTTGCGCATCATGAAAGGAACTGAAGC 575 ||||||| |||||| || || ||||| | || || | |||||||| | | || || Sbjct 784 CCATGGGAGATGTTCACAGAATCCTGCAAGAAGC-TGAGGATCATGAAGAGTTCAGATGC 842 Query 576 AATAGGACTAGCACCAAGGGCTATGGAGAAGTGCAA 611 || || ||||| ||||| || |||||||||||| Sbjct 843 AAATGGTCTAGCTCCAAGAGCCGCGGAGAAGTGCAA 878 >Solyc09g083280.3.1 Length=591 Score = 87.9 bits (47), Expect = 7e-17 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 457 TCTGATTATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTC 516 ||||| | || ||| | |||||||||||||||||||||| |||||||||||| ||||| Sbjct 448 TCTGAATTTGCCCCTGCTTATGAAGACAAAGATGGTGATTTGATGCTTGTTGGTGATGTT 507 Query 517 CCATGGGGGATGTTTGTTGATTCTTGCAA-ACGCTTGCGCATCATGAAAGGAACTGAAGC 575 || |||| |||||| | |||||| || | || || | || ||||||||| | ||||| Sbjct 508 CCTTGGGAAATGTTTATGTCTTCTTGTAAGAGGC-TGAGAATAATGAAAGGATCAGAAGC 566 Query 576 AATAGG 581 || ||| Sbjct 567 AAGAGG 572 >Solyc03g120390.3.1 Length=759 Score = 84.2 bits (45), Expect = 9e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 433 AAACTGATGGACCTTTTGAATAGTTCTGATTATGTTCCTACCTATGAAGACAAAGATGGT 492 || || ||||||||| ||| || || ||||| ||||| |||||||| |||||||| Sbjct 574 AAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGA 633 Query 493 GATTGGATGCTTGTTGGAGATGTCCCATGGGGGATGTTTGTTGAT 537 || ||||||||||| |||||||| |||||| |||||||||||| Sbjct 634 GACTGGATGCTTGTAGGAGATGTTCCATGGAAAATGTTTGTTGAT 678 >Solyc12g096980.3.1 Length=702 Score = 82.4 bits (44), Expect = 3e-15 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 465 TGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCATGGGG 524 ||||| || ||||| || |||||||| |||||||||||||| |||||||| |||||||| Sbjct 573 TGTTCTCACATATGAGGATAAAGATGGAGATTGGATGCTTGTAGGAGATGTTCCATGGGG 632 Query 525 GATGTTTGTTGA 536 ||||||| |||| Sbjct 633 GATGTTT-TTGA 643 >Solyc06g084070.3.1 Length=471 Score = 82.4 bits (44), Expect = 3e-15 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 461 ATTATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCAT 520 ||||| | || || || ||||| |||||||||||||||||||||| ||| || || || | Sbjct 335 ATTATATACCAACTTACGAAGATAAAGATGGTGATTGGATGCTTGCTGGTGACGTACCTT 394 Query 521 GGGGGATGTTTGTTGATTCTTGCAAACGCTTGCGCATCATGAAAGGAACTGAAGCAATAG 580 ||| ||||| || ||||||||||| | | | || ||||||||| ||||||| | || Sbjct 395 GGGATATGTTCATTAATTCTTGCAAAAGGCTAAGAATTATGAAAGGATCTGAAGCTAAAG 454 Query 581 GACTAGCA 588 | ||||| Sbjct 455 GTTTAGCA 462 >Solyc09g064530.3.1 Length=963 Score = 78.7 bits (42), Expect = 4e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 457 TCTGATTATGTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTC 516 ||||| | ||| | || ||||||||||||||||| || |||||||||||||||||||| Sbjct 775 TCTGAATTTGTGCTGACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGATGTT 834 Query 517 CCATGGGGGATGTTT 531 || |||| ||||||| Sbjct 835 CCTTGGGAGATGTTT 849 >Solyc04g054280.2.1 Length=498 Score = 76.8 bits (41), Expect = 2e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 469 CCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCATGGGGGATG 528 ||||| |||||||| ||||||||||||| |||||||||||||||||| || |||| ||| Sbjct 367 CCTACTTATGAAGATAAAGATGGTGATTTGATGCTTGTTGGAGATGTTCCTTGGGAAATG 426 Query 529 TT 530 || Sbjct 427 TT 428 >Solyc03g120380.3.1 Length=579 Score = 73.1 bits (39), Expect = 2e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 466 GTTCCTACCTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCATGG 522 ||||| | |||||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct 412 GTTCCAATCTATGAAGACAAAGATGGAGATTGGATGCTTGTCGGCGATGTTCCATGG 468 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20608010415 Database: Tomato Genome CDS (ITAG release 4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 34,993,605 Number of sequences in database: 34,075 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5