BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato genome chromosomes (Build SL4.0) 13 sequences; 782,520,033 total letters Query= Untitled_sequence Length=208 Score E Sequences producing significant alignments: (Bits) Value SL4.0ch01 385 2e-105 SL4.0ch12 108 4e-22 >SL4.0ch01 Length=90863682 Score = 385 bits (208), Expect = 2e-105 Identities = 208/208 (100%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 1 TCATAAAAATAAAATAGAATTAGCTATAAACTTTATTACTAATTATAAAATTTTATCTGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1126225 TCATAAAAATAAAATAGAATTAGCTATAAACTTTATTACTAATTATAAAATTTTATCTGT 1126284 Query 61 CGCTAACTCGTTACGAAATACAGGAATGGCCATTGAGGAGCAATCTAGACCCTAAGGTGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1126285 CGCTAACTCGTTACGAAATACAGGAATGGCCATTGAGGAGCAATCTAGACCCTAAGGTGT 1126344 Query 121 ATGGACCTCCAGAATCAGAAATCACAAAAGAGCTTATTGAGAATGAAATTGGAAACAATA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1126345 ATGGACCTCCAGAATCAGAAATCACAAAAGAGCTTATTGAGAATGAAATTGGAAACAATA 1126404 Query 181 TGACTGTTGAACAGGTATATATATATAT 208 |||||||||||||||||||||||||||| Sbjct 1126405 TGACTGTTGAACAGGTATATATATATAT 1126432 Score = 174 bits (94), Expect = 4e-42 Identities = 139/161 (86%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 49 AATTTTATCTGTCGCTAACTCGTTACGAAATACAGGAATGGCCATTGAGGAGCAATCTAG 108 |||||||||||||||| | |||| | ||||| ||||||||||||||| |||||| |||| Sbjct 1139674 AATTTTATCTGTCGCTGATCCGTTGCTAAATATAGGAATGGCCATTGAAGAGCAAGCTAG 1139615 Query 109 ACCCTAAGGTGTATGGACCTCCAGAATCAGAAATCACAAAAGAGCTTATTGA-GAATGAA 167 ||||| |||| ||||||||||| ||||||| ||| ||||||||||| ||||| ||| ||| Sbjct 1139614 ACCCTGAGGTATATGGACCTCCTGAATCAGCAATTACAAAAGAGCTAATTGAAGAA-GAA 1139556 Query 168 ATTGGAAACAATATGACTGTTGAACAGGTATATATATATAT 208 |||||| ||||||||||||| |||||||||||||||| Sbjct 1139555 ATTGGAGGATTTATGACTGTTGAAGAGGTATATATATATAT 1139515 >SL4.0ch12 Length=66688036 Score = 108 bits (58), Expect = 4e-22 Identities = 103/125 (82%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 76 AAATACAGGAATGGCCATTGAGGAGCAATCTAGACCCTAAGGTGTATGGACCTCCAGAAT 135 ||||||||||||||||| | | |||||| ||| |||| ||||||||||||| || |||| Sbjct 3940093 AAATACAGGAATGGCCACTAAAGAGCAAGCTAAGCCCTGAGGTGTATGGACCCCCTGAAT 3940034 Query 136 CAGAAATCACAAAAGAGCTTATTGAGAATGAAATTGGAA-ACAATATGACTGTTGAACAG 194 ||| ||| |||||||| || ||||| |||||||||| | ||||||||||||| || Sbjct 3940033 CAGCAATGACAAAAGAACTAATTGAACTTGAAATTGGAGGATC-TATGACTGTTGAAGAG 3939975 Query 195 GTATA 199 ||||| Sbjct 3939974 GTATA 3939970 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 141636062442 Database: Tomato genome chromosomes (Build SL4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 782,520,033 Number of sequences in database: 13 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5