BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 2.40) 34,725 sequences; 41,981,568 total letters Query= Untitled_sequence Length=1368 Score E Sequences producing significant alignments: (Bits) Value Solyc03g006830.2MADS-box transcription factor 2 (AHRD V1 **** D1M... 1844 0.0 Solyc06g035570.1Transcription factor MADS-box (AHRD V1 ***- A2Q6H... 139 5e-32 Solyc12g056460.1MADS box transcription factor (AHRD V1 **** C3PTE... 122 5e-27 Solyc08g080100.2MADS box transcription factor (AHRD V1 **** C3PTE... 119 7e-26 Solyc12g038510.1MADS box transcription factor 11 (AHRD V1 ***- D9... 110 4e-23 Solyc10g080030.1MADS box transcription factor (AHRD V1 ***- Q6RF3... 110 4e-23 Solyc05g015750.2SEPALLATA3 sep3 104 2e-21 Solyc03g114840.2MADS-box protein 1 MADS1 102 7e-21 Solyc04g005320.2MADS-box transcription factor (AHRD V1 **** Q8S4L... 100 2e-20 Solyc03g019710.2LETDR8 tdr8 100 2e-20 Solyc04g078300.2MADS-box transcription factor 1 (AHRD V1 *-*- D1M... 99.0 9e-20 Solyc01g093960.2MADS box transcription factor (AHRD V1 ***- Q2NNC... 97.1 3e-19 Solyc05g056620.1macrocalyx mc 91.6 1e-17 Solyc05g012020.2ripening inhibitor rin 89.8 5e-17 Solyc01g106170.2MADS-box transcription factor-like protein (AHRD ... 87.9 2e-16 Solyc11g005120.1MADS-box transcription factor 29 (AHRD V1 **** B6... 78.7 1e-13 Solyc10g017640.1MADS-box transcription factor (AHRD V1 ***- Q1EMR... 78.7 1e-13 Solyc06g059970.2TPI TPI 78.7 1e-13 Solyc02g089200.2TM29 TM29 75.0 1e-12 Solyc11g028020.1Tomato AGAMOUS like 11 tagl11 71.3 2e-11 Solyc00g179240.1MADS-box transcription factor (AHRD V1 ***- Q1EMR... 71.3 2e-11 Solyc04g076280.2MPF2-like (Fragment) (AHRD V1 ***- A8QYX1_9SOLA);... 69.4 7e-11 >Solyc03g006830.2 MADS-box transcription factor 2 (AHRD V1 **** D1MFS7_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=1034 Score = 1844 bits (998), Expect = 0.0 Identities = 1032/1046 (99%), Gaps = 12/1046 (1%) Strand=Plus/Plus Query 178 ATATATTTTCTAGGAATCTAATTCCTTAACTATTTTCTTTTCCATCCTCTTTCCTTTTTC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATATATTTTCTAGGAATCTAATTCCTTAACTATTTTCTTTTCCATCCTCTTTCCTTTTTC 60 Query 238 CCGGAAAATCGGAATTTAAATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTC 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCGGAAAATCGGAATTTAAATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTC 120 Query 298 AACGAGCAGGCAAGTGACGTTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGA 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AACGAGCAGGCAAGTGACGTTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGA 180 Query 358 ATTATCAGTTCTTTGTGATGCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACT 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATTATCAGTTCTTTGTGATGCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACT 240 Query 418 TTATGAATTTGCTAGCTCCAACATGCAGAAGATAATTGAGAGATACCGAGGACGTGCAAG 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTATGAATTTGCTAGCTCCAACATGCAGAAGATAATTGAGAGATACCGAGGACGTGCAAG 300 Query 478 AGAAACAACGACGGTGGACAAAAGCACTGAACTCGAGCACTACATGGAGAACTTGAAGCA 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGAAACAACGACGGTGGACAAAAGCACTGAACTCGAGCACTACATGGAGAACTTGAAGCA 360 Query 538 TGAAACAGCTAATATGGCGAAGAAGATAGAGATCCTCGAAATTTCTAAACGGAAGCTAAT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGAAACAGCTAATATGGCGAAGAAGATAGAGATCCTCGAAATTTCTAAACGGAAGCTAAT 420 Query 598 GGGGCAAGGATTAGGGTCATGTTCAATGGATGAACTAGAAGACATTGACAGCCAACTGGA 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGGGCAAGGATTAGGGTCATGTTCAATGGATGAACTAGAAGACATTGACAGCCAACTGGA 480 Query 658 GAGGACCCTCAAAATTATCAGGGCTAGAAAGACTCAATTGTTCAAAGAGGAAATAGAAAG 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GAGGACCCTCAAAATTATCAGGGCTAGAAAGACTCAATTGTTCAAAGAGGAAATAGAAAG 540 Query 718 TCTAAAAGCAAAGGAGAGACTATTGCTCCAACAAAATGCAAGTTTACGTGAAAAGTGCGG 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TCTAAAAGCAAAGGAGAGACTATTGCTCCAACAAAATGCAAGTTTACGTGAAAAGTGCGG 600 Query 778 GCTTAGGCCAATGCTATCAGAGTCAGAGTCAGCATCTGCACCTGCACCCGAACCCATACC 837 |||||||||||||||||||||||||| || | ||||||||||||||||||| Sbjct 601 GCTTAGGCCAATGCTATCAGAGTCAG---CA---T------CTGCACCCGAACCCATACC 648 Query 838 AGCACCACCATCAACACCACCGGCTCAATCAAAAGAAAGGGGAAATTGTAGCCAAAGTAC 897 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 649 AGCACCACCATCAACACCACCAGCTCAATCAAAAGAAAGGGGAAATTGTAGCCAAAGTAC 708 Query 898 AAAGAGTTGGGAAGTGGAGACTGAATTGTTTATTGGCCTTCCTCAAACGCGCTGCTTATA 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 AAAGAGTTGGGAAGTGGAGACTGAATTGTTTATTGGCCTTCCTCAAACGCGCTGCTTATA 768 Query 958 GTAGCTTGGATCAGTGGTTGAGCTAGGGTTTTTTTTGGTCAAAGGAATTTAAACCTCGAA 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 GTAGCTTGGATCAGTGGTTGAGCTAGGGTTTTTTTTGGTCAAAGGAATTTAAACCTCGAA 828 Query 1018 GAAGTACTCAGAGAAGGCAAAATGGGTTCAATCTCTACTCTATATTACACTAAATTAAAA 1077 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 829 GAAGTACACAGAGAAGGCAAAATGGGTTCAATCTCTACTCTATATTACACTAAATTAAAA 888 Query 1078 GATAAATTTTAACTATATATGTTATAATATTATTTTTCGCTGTAGGAAAATCAGTTAAAC 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 889 GATAAATTTTAACTATATATGTTATAATATTATTTTTCGCTGTAGGAAAATCAGTTAAAC 948 Query 1138 ACCCCATCAATCCTACGTGGCTCCGCCCCGACCGGGACAATGGGACCATTTGTTCATATT 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 ACCCCATCAATCCTACGTGGCTCCGCCCCGACCGGGACAATGGGACCATTTGTTCATATT 1008 Query 1198 TTGTTTATGGTTCTCCTCAGTTATTT 1223 |||||||||||||||||||||||||| Sbjct 1009 TTGTTTATGGTTCTCCTCAGTTATTT 1034 >Solyc06g035570.1 Transcription factor MADS-box (AHRD V1 ***- A2Q6H2_MEDTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=165 Score = 139 bits (75), Expect = 5e-32 Identities = 131/159 (82%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 278 ATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACGTTTTCGAAAAGACGAAATGGA 337 |||||||| || || ||| |||| ||| |||||||||| ||||| ||| | |||||||| Sbjct 1 ATGAAAAGGATTGAGAATGCAACCAGCCGGCAAGTGACTTTTTCTAAACGGAGAAATGGA 60 Query 338 CTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGATGCTGAAGTTGCTTTCATTATT 397 ||| ||||||||||||||| |||| ||||||||||||||| |||||||| | |||||| Sbjct 61 GTTATAAAGAAAGCTTATGAACTATCCGTTCTTTGTGATGCTCAAGTTGCTCTTATTATT 120 Query 398 TTCTCACATAAAGGAAGACTTTATGAATTTGCTAGCTCC 436 ||||| | ||||||||||| | | |||| | |||||| Sbjct 121 TTCTCTAACAAAGGAAGACTCTTTCAATTCTCAAGCTCC 159 >Solyc12g056460.1 MADS box transcription factor (AHRD V1 **** C3PTE7_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=621 Score = 122 bits (66), Expect = 5e-27 Identities = 141/176 (80%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 257 ATGGTGAGAGGAA-AAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGAC 315 |||||||| |||| || | || |||||||| || |||||| |||| || || |||||||| Sbjct 1 ATGGTGAGGGGAATAACT-GAGATGAAAAGGATTGAAAATACAACAAGTAGACAAGTGAC 59 Query 316 GTTTTCGAAAAGACGAAATGGACTTAC-GAAGAAAGCTTATGAATTATCAGTTCTTTGTG 374 || || |||||| || |||||| || ||||| || | |||| | ||||||||||||| Sbjct 60 ATTCTCAAAAAGAAGAGGTGGACT-ACTTAAGAAGGCATTTGAACTCTCAGTTCTTTGTG 118 Query 375 ATGCTGAAGTT-G-CTT-TCATTATTTTCTCACATAAAGGAAGACTTTATGAATTT 427 ||||||||||| | || |||| ||||||||| | ||||||| ||||| ||| ||| Sbjct 119 ATGCTGAAGTTAGTCTCATCAT-ATTTTCTCA-A-AAAGGAAAACTTTTTGAGTTT 171 >Solyc08g080100.2 MADS box transcription factor (AHRD V1 **** C3PTE7_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=887 Score = 119 bits (64), Expect = 7e-26 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 255 AAATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGA 314 ||||||||||||||||| || |||||||||| |||||| |||| || || ||||||| Sbjct 203 AAATGGTGAGAGGAAAAACTGAGTTGAAAAGAATTGAAAATGCAACAAGTAGACAAGTGA 262 Query 315 CGTTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTG 374 | || || |||||| ||| ||| ||| || ||||| | ||| | |||||| | |||| Sbjct 263 CCTTCTCAAAAAGAAGAAGTGGGCTTCTAAAAAAAGCATTTGAGCTTTCAGTTTTATGTG 322 Query 375 ATGCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACTTTATGA 423 |||||||||||||| | ||| ||||||| | ||||||| |||||||| Sbjct 323 ATGCTGAAGTTGCTCTTATTGTTTTCTCTCCAAAAGGAAAGCTTTATGA 371 >Solyc12g038510.1 MADS box transcription factor 11 (AHRD V1 ***- D9IFM5_ONCHC); contains Interpro domain(s) IPR002487 Transcription factor, K-box Length=753 Score = 110 bits (59), Expect = 4e-23 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 257 ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACG 316 |||| ||||||| ||||||| | || |||||||| || || | ||||||||| || Sbjct 1 ATGGGAAGAGGAAGAGTAGAACTAAAGAGAATAGAGAACAAAATAAACAGGCAAGTTACT 60 Query 317 TTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGAT 376 ||| | || ||| ||||||||||| |||||||||||||| ||||| | ||||||||| Sbjct 61 TTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAGTTATCTATACTTTGTGAT 120 Query 377 GCTGAAGTTGCTTTCATTATTTTCTC 402 |||||||||||| |||| || ||||| Sbjct 121 GCTGAAGTTGCTCTCATCATCTTCTC 146 >Solyc10g080030.1 MADS box transcription factor (AHRD V1 ***- Q6RF31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=690 Score = 110 bits (59), Expect = 4e-23 Identities = 146/189 (77%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 257 ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACG 316 |||| ||||| ||| |||| ||||| | ||| |||||| || || || ||||| || Sbjct 1 ATGGGAAGAGGGAAAATAGAGATGAAGAAAATTGAAAATATAAGTAGTAGACAAGTAACA 60 Query 317 TTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGAT 376 ||||| ||| || || ||||||| ||||||||| | ||||| || |||||||||||| Sbjct 61 TTTTCAAAACGAAGAGCTGGACTTTTTAAGAAAGCTGAAGAATTGTCTGTTCTTTGTGAT 120 Query 377 GCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACTTTATGAATTTGCTAGCTCC 436 |||||| ||| | | ||| ||||||| ||| | || |||||| |||||||||||||| Sbjct 121 GCTGAAATTGGTGTTATTGTTTTCTCTAATACTGATAGGCTTTATAAATTTGCTAGCTCC 180 Query 437 AACATGCAG 445 || || ||| Sbjct 181 AA-ATCCAG 188 >Solyc05g015750.2 SEPALLATA3 sep3 Length=1033 Score = 104 bits (56), Expect = 2e-21 Identities = 137/176 (78%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 304 CAGGCAAGTGACGTTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATC 363 |||||||||||| ||| | || ||| ||||||| ||| ||||||||||||||| | || Sbjct 144 CAGGCAAGTGACCTTTGCTAAGAGAAGAAATGGGCTTTTGAAGAAAGCTTATGAGCTTTC 203 Query 364 AGTTCTTTGTGATGCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACTTTATGA 423 |||||||||||||||||| |||||| | || || ||||| ||| |||| ||| ||||| Sbjct 204 AGTTCTTTGTGATGCTGAGGTTGCTCTAATCATCTTCTCTAATAGGGGAAAACTCTATGA 263 Query 424 ATT-TGC--TAGCTCCAACATGCAGAAGATAATTGAGAGATACCGAGGACGTGCAA 476 || ||| ||| || | ||||| |||| | ||||| |||| || | |||||| Sbjct 264 GTTCTGCAGTAGTTCTAGCATGCTAAAGACGTTGGAGAGGTACC-AGAA-GTGCAA 317 >Solyc03g114840.2 MADS-box protein 1 MADS1 Length=1235 Score = 102 bits (55), Expect = 7e-21 Identities = 156/205 (76%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 256 AATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGAC 315 ||||| ||||||| ||| || | || |||||||||||| || | |||||||| || Sbjct 192 AATGGGAAGAGGAAGAGTTGAGCTTAAGAGAATAGAAAATAAAATAAATAGGCAAGTCAC 251 Query 316 GTTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGA 375 ||| | || ||| ||||||||||| || |||||||||||| | || ||||||||||| Sbjct 252 TTTTGCTAAGAGAAGAAATGGACTTCTTAAAAAAGCTTATGAACTTTCTGTTCTTTGTGA 311 Query 376 TGCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACTTTATGAATTT-GCTAGCT 434 |||||||||||| | || || ||||| ||| || | ||| ||||||||| || ||| Sbjct 312 TGCTGAAGTTGCCCTTATAATCTTCTCTAATAGGGGTAAACTCTATGAATTTTGC-AGCA 370 Query 435 C--CAA-CATGCAGAAGATAATTGA 456 | ||| |||| ||| | |||||| Sbjct 371 CTTCAAGCATGGTGAAAACAATTGA 395 >Solyc04g005320.2 MADS-box transcription factor (AHRD V1 **** Q8S4L4_SOLLC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=922 Score = 100 bits (54), Expect = 2e-20 Identities = 133/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 257 ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACG 316 |||| ||||| || |||||| |||| |||||||||||| | | ||||||||| || Sbjct 1 ATGGGAAGAGGTAAGGTAGAATTGAAGAGAATAGAAAATAAGATAAACAGGCAAGTTACT 60 Query 317 TTTTCGAAAAGACGAAATGGACTTAC-GAAGAAAGCTTATGAATTATCAGTTCTTTGTGA 375 ||| | || ||| |||||||| |||| || ||||||||||| | || || | ||||| Sbjct 61 TTTGCTAAGAGAAGAAATGGA-TTACTCAAAAAAGCTTATGAGCTTTCTATTTTGTGTGA 119 Query 376 TGCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACTTTATGAATTT 427 |||||||||||| | || |||||||| ||| ||| | ||| ||||||||| Sbjct 120 AGCTGAAGTTGCTCTTATCATTTTCTCTAATAGAGGCAAACTCTATGAATTT 171 >Solyc03g019710.2 LETDR8 tdr8 Length=812 Score = 100 bits (54), Expect = 2e-20 Identities = 107/133 (80%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 256 AATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGAC 315 ||||| |||||||||||| ||| |||| |||||||| ||| ||| | |||||||| || Sbjct 65 AATGGGGAGAGGAAAAGTTGAATTGAAGAGAATAGAGAATCAAACAAATAGGCAAGTTAC 124 Query 316 GTTTTCGAAAAGACGAAATGGACTTAC-GAAGAAAGCTTATGAATTATCAGTTCTTTGTG 374 || || || ||| ||||||| |||| || |||||||||||| | || |||| |||| Sbjct 125 CTTCTCCAAGAGAAGAAATGG-TTTACTTAAAAAAGCTTATGAACTCTCTATTCTATGTG 183 Query 375 ATGCTGAAGTTGC 387 ||||||||||||| Sbjct 184 ATGCTGAAGTTGC 196 >Solyc04g078300.2 MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=1157 Score = 99.0 bits (53), Expect = 9e-20 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 257 ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACG 316 |||| ||||| ||| | |||| || | |||||| ||| |||| | |||||||| || Sbjct 11 ATGGGGAGAGTAAAGCTTCAAATCAAGAAAATAGAGAATACAACAAATAGGCAAGTCACT 70 Query 317 TTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGAT 376 || || |||||| ||||||| |||| ||||||||||||||| | || || ||||||||| Sbjct 71 TTCTCCAAAAGAAGAAATGGTCTTATCAAGAAAGCTTATGAACTTTCTGTACTTTGTGAT 130 Query 377 GCTGAAGTTGCTTTCATTATTTTCTC 402 | ||| |||||| |||| || ||||| Sbjct 131 GTTGATGTTGCTCTCATCATGTTCTC 156 >Solyc01g093960.2 MADS box transcription factor (AHRD V1 ***- Q2NNC0_ELAGV); contains Interpro domain(s) IPR002487 Transcription factor, K-box Length=986 Score = 97.1 bits (52), Expect = 3e-19 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 255 AAATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGA 314 |||||| |||||| | ||| ||| | || |||||||| || || | | | ||||||| Sbjct 90 AAATGGGGAGAGGGAGAGTGGAACTAAAGAGAATAGAGAACAAAATCAACCGTCAAGTGA 149 Query 315 CGTTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTG 374 | ||||| || || | ||||| | |||||||||||||||||||||||| ||||||| Sbjct 150 CATTTTCTAAGAGGAGGAATGGTTTGTTGAAGAAAGCTTATGAATTATCAGTGCTTTGTG 209 Query 375 ATGCTGAAGTTGCTTTCATTATTTTCTC 402 | |||||||||||| |||| || ||||| Sbjct 210 AGGCTGAAGTTGCTCTCATCATCTTCTC 237 >Solyc05g056620.1 macrocalyx mc Length=4788 Score = 91.6 bits (49), Expect = 1e-17 Identities = 126/163 (77%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 252 TTT-AA-ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCA 309 ||| || |||| ||||||||||| ||| | | || |||||| ||| || | || || Sbjct 3696 TTTGAAGATGGGAAGAGGAAAAGTTGAATTAAGAAAAATAGAGAATAAAATAAATAGACA 3755 Query 310 AGTGACGTTTTCGAAAAGACGAAATGGACTTA-CGAAGAAAGCTTATGAATTATCAGTTC 368 ||| || ||||| || ||| || |||| ||| ||| |||||| ||||| | |||||| Sbjct 3756 AGTAACATTTTCAAAGAGAAGAGGTGGA-TTAGTGAAAAAAGCTCATGAAATTTCAGTTT 3814 Query 369 TTTGTGATGCTGAAGTTGCTTTCATTATTTTCTCACATAAAGG 411 | |||||||||||||||||||| ||| ||||||| || ||||| Sbjct 3815 TATGTGATGCTGAAGTTGCTTTAATTGTTTTCTCTCA-AAAGG 3856 >Solyc05g012020.2 ripening inhibitor rin Length=1203 Score = 89.8 bits (48), Expect = 5e-17 Identities = 130/170 (76%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 259 GGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACGTT 318 ||| ||||| ||||||||| |||| ||||| || || || | || ||||| || || Sbjct 258 GGT-AGAGGGAAAGTAGAATTGAAGAGAATTGAGAACAAAATAAATAGACAAGTTACCTT 316 Query 319 TTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGATGC 378 | | || ||| |||||||||| ||||||||||||||| | || | ||||||||||| Sbjct 317 TGCAAAGAGAAGAAATGGACTCCTAAAGAAAGCTTATGAACTTTCTATACTTTGTGATGC 376 Query 379 TGAAGTTGCTTTCATTATTTTCTCACATAAAGG-AAGACTTTATGAATTT 427 |||| ||||| | ||||||||||| | || ||| |||||||||||| Sbjct 377 TGAAATTGCTCTTATTATTTTCTCTAGTCGTGGCAAG-CTTTATGAATTT 425 >Solyc01g106170.2 MADS-box transcription factor-like protein (AHRD V1 *-*- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=629 Score = 87.9 bits (47), Expect = 2e-16 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 257 ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACG 316 |||| |||||||||| ||| || |||| || || ||| |||| || || ||||| || Sbjct 181 ATGGGGAGAGGAAAAATAGTGATACAAAGGATTGATAATACAACAAGTAGACAAGTTACT 240 Query 317 TTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGAT 376 || || || ||| ||||||||||| || || ||| | || | || ||||||||||| Sbjct 241 TTCTCAAAGAGAAGAAATGGACTTCTCAAAAAGGCTAAAGAGCTTGCAATTCTTTGTGAT 300 Query 377 GCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACTTTATGAATTTGC 429 ||| |||||| |||||||||||||| | |||| ||| ||||||||||| Sbjct 301 GCTCAAGTTGGACTCATTATTTTCTCAAGCACTGGAAAACTCTATGAATTTGC 353 >Solyc11g005120.1 MADS-box transcription factor 29 (AHRD V1 **** B6TVD9_MAIZE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=717 Score = 78.7 bits (42), Expect = 1e-13 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 257 ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACG 316 |||| ||||||||| ||||| |||| ||||| || || ||| || || ||||| || Sbjct 1 ATGGGGAGAGGAAAGATAGAAGTGAAGAGAATTGAGAACAAAACAAGTAGACAAGTTACT 60 Query 317 TTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGAT 376 || || || ||| || ||||||| ||||||| | ||||| | || |||||||||||| Sbjct 61 TTCTCAAAGAGAAGAGCTGGACTTTTGAAGAAAACACATGAACTTTCTGTTCTTTGTGAT 120 Query 377 GCTGAAGTTGCTTTCATTATTTTCTCA 403 ||| || ||| |||| ||||||||| Sbjct 121 GCTCAAATTGGACTCATCATTTTCTCA 147 >Solyc10g017640.1 MADS-box transcription factor (AHRD V1 ***- Q1EMR8_PLAMJ); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=186 Score = 78.7 bits (42), Expect = 1e-13 Identities = 131/174 (75%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 257 ATGGTGAGA-GGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGAC 315 ||||||||| |||||| | ||||||| | || ||||| | || ||||||||||| || Sbjct 1 ATGGTGAGAGGGAAAACT-GAAATGAGGCGTATCGAAAACGCGACAAGCAGGCAAGTCAC 59 Query 316 GTTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGA 375 || || || ||| |||||||| | || ||||| | ||| | || ||||||||||| Sbjct 60 TTTCTCAAAGAGAAGAAATGGATTGTTAAAAAAAGCCTTTGAGCTTTCTGTTCTTTGTGA 119 Query 376 TGCTGAAGTTGCTTTCATTATT-TT-CTCACATAAAGGAAGACTTTATGAATTT 427 |||| |||||| || ||||| || ||| | || || | ||||||||||||| Sbjct 120 TGCTCAAGTTGGATTAGTTATTCTTTCTC-C-TAGAGACAAACTTTATGAATTT 171 >Solyc06g059970.2 TPI TPI Length=908 Score = 78.7 bits (42), Expect = 1e-13 Identities = 100/128 (78%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 257 ATGGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCAACGAGCAGGCAAGTGACG 316 |||| |||||| ||| |||| || || ||||||||||| ||| | ||||||||| || Sbjct 30 ATGGGGAGAGGTAAAATAGAGATAAAGAGAATAGAAAACACAAACAACAGGCAAGTAACT 89 Query 317 TTTTCGAAAAGACGAAATGGACTTACGAAGAAAGCTTATGAA-TTATCAGTTCTTTGTGA 375 | ||| |||||| ||||||| | | ||||||||| | ||| ||| | ||||||||||| Sbjct 90 TATTCAAAAAGAAGAAATGGTATAATAAAGAAAGCTAAAGAAATTA-CTGTTCTTTGTGA 148 Query 376 TGCTGAAG 383 ||| ||| Sbjct 149 AGCT-AAG 155 >Solyc02g089200.2 TM29 TM29 Length=1247 Score = 75.0 bits (40), Expect = 1e-12 Identities = 139/186 (75%), Gaps = 9/186 (5%) Strand=Plus/Plus Query 259 GGTGAGAGGAAAAGTAGAAATGAAAAGAATAGAAAATTCA-ACGAGCAGGCAAGTGACGT 317 ||| ||||||| ||| || |||| || |||||||| | | | || ||||| || | Sbjct 367 GGT-AGAGGAAGAGTTGAGCTGAAGAGGATAGAAAA-CAAGATAAATAGACAAGTCAC-T 423 Query 318 TTTCGAAA-AGACGAAATGGACTTAC-GAAGAAAGCTTATGAATTATCAGTTCTTTGTGA 375 ||| ||| || |||||||| || | || |||||||||||| |||| || |||||||| Sbjct 424 TTTGCAAAGAGGAGAAATGGA-TTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGA 482 Query 376 TGCTGAAGTTGCTTTCATTATTTTCTCACATAAAGGAAGACTTTATGAATT-TGCTAGCT 434 ||||||||||||| | | ||||||| || |||| ||| |||||||| ||| ||| Sbjct 483 TGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGC-AGCA 541 Query 435 CCAACA 440 | |||| Sbjct 542 CAAACA 547 >Solyc11g028020.1 Tomato AGAMOUS like 11 tagl11 Length=672 Score = 71.3 bits (38), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 323 AAAAGACGAAATGGACTTAC-GAAGAAAGCTTATGAATTATCAGTTCTTTGTGATGCTGA 381 || ||| |||||||| |||| ||| || || |||||| | |||||||| ||||||||||| Sbjct 67 AAGAGAAGAAATGGA-TTACTGAAAAAGGCATATGAACTTTCAGTTCTATGTGATGCTGA 125 Query 382 AGTTGCTTTCATTATTTTCTC 402 ||||| ||||| ||||||| Sbjct 126 GATTGCTCTCATTGTTTTCTC 146 >Solyc00g179240.1 MADS-box transcription factor (AHRD V1 ***- Q1EMR8_PLAMJ); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=165 Score = 71.3 bits (38), Expect = 2e-11 Identities = 114/150 (76%), Gaps = 8/150 (5%) Strand=Plus/Plus Query 287 ATAGAAAATTCAACGAGCAGGCAAGTGACGTTTTCGAAAAGACGAAATGGACTTAC-GAA 345 ||||| || | || ||||| ||||| || || || || ||| ||||||| || | || Sbjct 10 ATAGAGAACGCCACAAGCAGACAAGTTACTTTCTCAAAGAGAAGAAATGG-TTTGCTAAA 68 Query 346 GAAAGCTTATGAATTATCAGTTCTT-TGTGATGCTGAAGTTGCTTTCATTAT-TTT-CTC 402 ||||||| ||| | || | |||| |||||||||||||| | || ||||| ||| ||| Sbjct 69 AAAAGCTTTTGAGCTTTCTG-TCTTATGTGATGCTGAAGTGGGATTGATTATATTTTCTC 127 Query 403 ACATAAAGGAAGACTTTATGAATTTGCTAG 432 || | ||||| ||| |||||||||||||| Sbjct 128 -CA-AGAGGAAAACTATATGAATTTGCTAG 155 >Solyc04g076280.2 MPF2-like (Fragment) (AHRD V1 ***- A8QYX1_9SOLA); contains Interpro domain(s) IPR002487 Transcription factor, K-box Length=960 Score = 69.4 bits (37), Expect = 7e-11 Identities = 134/179 (75%), Gaps = 13/179 (7%) Strand=Plus/Plus Query 266 GGAAAAG-TAGAAATGAAAAGAATAGAAAATTCAACGAGC-AGGCAAGTGACGTTTTCGA 323 ||||||| || |||| |||| ||||| ||| ||| ||| || ||||| || ||||| Sbjct 46 GGAAAAGATAAAAATAAAAAAGATAGATAATATAAC-AGCAAGACAAGTAACATTTTC-- 102 Query 324 AAAGACGA-AA-TGGACTTACGAAGAAAGCTTATGAATTATCAGTTCTTTGTGATGCTGA 381 ||||| || || || ||| ||||||||| | || | || ||||||||||||||||| Sbjct 103 AAAGAGGAGAAGAGGGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGA 162 Query 382 AGTTGCT-TT--CATTATTTTCTCACATAAAGGAAGACTTTATGAATTTGCTAGCTCCA 437 |||||| || |||| |||||| | || |||| || | ||| ||||||||| ||| Sbjct 163 TGTTGCTCTTATCATT-TTTTCTG-C-TACTGGAAAGCTATTTGATTTTGCTAGCACCA 218 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55127639556 Database: Tomato Genome cDNA (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 41,981,568 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5