BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: N.benthamiana Genome v1.0.1 predicted cDNA 57,140 sequences; 82,582,885 total letters Query= Untitled_sequence Length=273 Score E Sequences producing significant alignments: (Bits) Value Niben101Scf03374g01007.1sp|Q8VYK7|ATG8F_ARATH *-*- Autophagy-rela... 492 1e-138 Niben101Scf13429g04022.1sp|Q8VYK7|ATG8F_ARATH *-*- Autophagy-rela... 318 2e-86 Niben101Scf08640g00001.1sp|Q8VYK7|ATG8F_ARATH *-*- Autophagy-rela... 307 5e-83 Niben101Scf01269g14003.1sp|A2YS06|ATG8C_ORYSI *-*- Autophagy-rela... 141 5e-33 Niben101Scf08681g00003.1sp|A2YS06|ATG8C_ORYSI *-*- Autophagy-rela... 104 7e-22 Niben101Scf02387g03014.1sp|Q8LEM4|ATG8A_ARATH *-*- Autophagy-rela... 89.8 2e-17 Niben101Scf04339g08020.1sp|Q9SL04|ATG8D_ARATH *-*- Autophagy-rela... 84.2 9e-16 >Niben101Scf03374g01007.1 sp|Q8VYK7|ATG8F_ARATH *-*- Autophagy-related protein 8f IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain) Length=438 Score = 492 bits (266), Expect = 1e-138 Identities = 266/266 (100%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 1 ATGGCAAAGAGTTCATTCAAGCAAGAACATAATCTTGAGAAGAGGCGTGCTGAAGCTTCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 ATGGCAAAGAGTTCATTCAAGCAAGAACATAATCTTGAGAAGAGGCGTGCTGAAGCTTCT 171 Query 61 AGGATTAGGGAAAAGTACCCCGATAGGATTCCGGTAATAGTTGAAAAGGCGGAAAAGAGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 AGGATTAGGGAAAAGTACCCCGATAGGATTCCGGTAATAGTTGAAAAGGCGGAAAAGAGT 231 Query 121 GATATTCCCAACATTGACAAGAAAAAGTATCTTGTTCCAGCCGACTTAACAGTAGGGCAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 GATATTCCCAACATTGACAAGAAAAAGTATCTTGTTCCAGCCGACTTAACAGTAGGGCAG 291 Query 181 TTTGTCTATGTCATTCGCAAAAGGATTAAATTGAGTGCAGAAAAGGCAATTTTCATATTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TTTGTCTATGTCATTCGCAAAAGGATTAAATTGAGTGCAGAAAAGGCAATTTTCATATTT 351 Query 241 GTTGATAATGTCCTACCACCAACAGA 266 |||||||||||||||||||||||||| Sbjct 352 GTTGATAATGTCCTACCACCAACAGA 377 >Niben101Scf13429g04022.1 sp|Q8VYK7|ATG8F_ARATH *-*- Autophagy-related protein 8f IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain) Length=1045 Score = 318 bits (172), Expect = 2e-86 Identities = 234/265 (88%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 1 ATGGCAAAGAGTTCATTCAAGCAAGAACATAATCTTGAGAAGAGGCGTGCTGAAGCTTCT 60 ||||| ||||| |||||||||||||| ||| || ||||||||||||| ||||| ||| || Sbjct 124 ATGGCTAAGAGCTCATTCAAGCAAGAGCATGATTTTGAGAAGAGGCGCGCTGAGGCTGCT 183 Query 61 AGGATTAGGGAAAAGTACCCCGATAGGATTCCGGTAATAGTTGAAAAGGCGGAAAAGAGT 120 ||||||||||||| ||| | |||||||||||||| |||||||||||||| ||||| ||| Sbjct 184 CGGATTAGGGAAAAATACTCAGATAGGATTCCGGTGATAGTTGAAAAGGCTGAAAAAAGT 243 Query 121 GATATTCCCAACATTGACAAGAAAAAGTATCTTGTTCCAGCCGACTTAACAGTAGGGCAG 180 |||||||||||||| ||||||||||||||||| || ||||| ||||| ||| | ||||| Sbjct 244 GATATTCCCAACATCGACAAGAAAAAGTATCTCGTGCCAGCTGACTTGACAATTGGGCAA 303 Query 181 TTTGTCTATGTCATTCGCAAAAGGATTAAATTGAGTGCAGAAAAGGCAATTTTCATATTT 240 |||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| Sbjct 304 TTTGTCTATGTCATTCGCAAGAGAATCAAATTGAGTGCAGAAAAGGCAATATTCATATTT 363 Query 241 GTTGATAATGTCCTACCACCAACAG 265 | || ||||||||||| ||||||| Sbjct 364 ATCGACAATGTCCTACCGCCAACAG 388 >Niben101Scf08640g00001.1 sp|Q8VYK7|ATG8F_ARATH *-*- Autophagy-related protein 8f IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain) Length=822 Score = 307 bits (166), Expect = 5e-83 Identities = 232/265 (88%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 1 ATGGCAAAGAGTTCATTCAAGCAAGAACATAATCTTGAGAAGAGGCGTGCTGAAGCTTCT 60 |||| ||||| |||||||||||||| ||| | ||||||||||||||||| || ||| || Sbjct 139 ATGGTTAAGAGCTCATTCAAGCAAGAGCATGACCTTGAGAAGAGGCGTGCCGAGGCTGCT 198 Query 61 AGGATTAGGGAAAAGTACCCCGATAGGATTCCGGTAATAGTTGAAAAGGCGGAAAAGAGT 120 ||||||||||||| ||| | |||||||||||||| ||||| |||||||| || || ||| Sbjct 199 CGGATTAGGGAAAAATACTCAGATAGGATTCCGGTGATAGTCGAAAAGGCTGAGAAAAGT 258 Query 121 GATATTCCCAACATTGACAAGAAAAAGTATCTTGTTCCAGCCGACTTAACAGTAGGGCAG 180 |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct 259 GATATTCCGAACATTGATAAGAAAAAGTATCTTGTGCCAGCTGACTTGACAGTTGGGCAA 318 Query 181 TTTGTCTATGTCATTCGCAAAAGGATTAAATTGAGTGCAGAAAAGGCAATTTTCATATTT 240 |||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||| Sbjct 319 TTTGTCTATGTCATTCGCAAGAGAATCAAATTGAGTGCGGAAAAGGCAATTTTCATATTT 378 Query 241 GTTGATAATGTCCTACCACCAACAG 265 |||| || |||||||| ||||||| Sbjct 379 ATTGACAACGTCCTACCCCCAACAG 403 >Niben101Scf01269g14003.1 sp|A2YS06|ATG8C_ORYSI *-*- Autophagy-related protein 8C IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain) Length=957 Score = 141 bits (76), Expect = 5e-33 Identities = 202/265 (76%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 1 ATGGCAAAGAGTTCATTCAAGCAAGAACATAATCTTGAGAAGAGGCGTGCTGAAGCTTCT 60 ||||| || || || ||||| |||||| |||||||| | | | ||||||||| || Sbjct 234 ATGGCCAAAAGCTCCTTCAAATTGGAACATCCTCTTGAGAGGCGACAGGCTGAAGCTGCT 293 Query 61 AGGATTAGGGAAAAGTACCCCGATAGGATTCCGGTAATAGTTGAAAAGGCGGAAAAGAGT 120 | || ||||| |||||||| ||||| || ||||| || || || ||||| |||| ||| Sbjct 294 CGTATCAGGGAGAAGTACCCTGATAGAATCCCGGTTATTGTGGAGAAGGCTGAAAGAAGT 353 Query 121 GATATTCCCAACATTGACAAGAAAAAGTATCTTGTTCCAGCCGACTTAACAGTAGGGCAG 180 || ||||| |||||||||||||||||||| | || || || || | || || || || Sbjct 354 GACATTCCTGACATTGACAAGAAAAAGTATTTGGTCCCCGCGGATCTGACTGTTGGACAA 413 Query 181 TTTGTCTATGTCATTCGCAAAAGGATTAAATTGAGTGCAGAAAAGGCAATTTTCATATTT 240 ||||||||||| |||| || |||||||| | ||||| || ||||||||||| || ||| Sbjct 414 TTTGTCTATGTTGTTCGTAAGAGGATTAAGCTCAGTGCTGAGAAGGCAATTTTTATCTTT 473 Query 241 GTTGATAATGTCCTACCACCAACAG 265 || | ||| |||| || || |||| Sbjct 474 GTGAAGAATATCCTCCCCCCTACAG 498 >Niben101Scf08681g00003.1 sp|A2YS06|ATG8C_ORYSI *-*- Autophagy-related protein 8C IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain) Length=871 Score = 104 bits (56), Expect = 7e-22 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 49 GCTGAAGCTTCTAGGATTAGGGAAAAGTACCCCGATAGGATTCCGGTAATAGTTGAAAAG 108 || |||||| || | || ||||| ||||| || ||||| || ||||| || || || ||| Sbjct 161 GCCGAAGCTGCTCGTATCAGGGAGAAGTATCCTGATAGAATACCGGTTATTGTGGAGAAG 220 Query 109 GCGGAAAAGAGTGATATTCCCAACATTGACAAGAAAAAGTATCTTG-TTCCAGCCGACTT 167 || |||| ||||| ||||| |||||||||||||||| || |||| |||| || || | Sbjct 221 GCTGAAAGAAGTGACATTCCTGACATTGACAAGAAAAAATA-CTTGGTTCCTGCTGATCT 279 Query 168 AACAGTAGGGCAGTTTGTCTATGTCATTCGCAAAAGGATTAAATTGAGTGCAGAAAAGGC 227 || || ||||| ||||| ||||| |||| || || || || | ||||| || ||||| Sbjct 280 GACTGTGGGGCAATTTGTGTATGTTGTTCGTAAGAGAATAAAGCTTAGTGCTGAGAAGGC 339 Query 228 AATTTTCATATTTGT 242 ||||| || ||||| Sbjct 340 TATTTTTATCTTTGT 354 >Niben101Scf02387g03014.1 sp|Q8LEM4|ATG8A_ARATH *-*- Autophagy-related protein 8a IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain) Length=290 Score = 89.8 bits (48), Expect = 2e-17 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 93 GGTAATAGTTGAAAAGGCGGAAAAGAGTGATATTCCCAACATTGACAAGAAAAAGTATCT 152 ||| || || || ||||| |||| |||||||| || |||||||||||||||||||| | Sbjct 10 GGTTATTGTGGAGAAGGCTGAAAGAAGTGATATCCCTGACATTGACAAGAAAAAGTATTT 69 Query 153 TGTTCCAGCCGACTTAACAGTAGGGCAGTTTGTCTATGTCATTCGCAAAAGGATTAAATT 212 ||||| || || | || || || || ||||| ||||| |||| || |||||||| | Sbjct 70 GGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGTAAGAGGATTAAGCT 129 Query 213 GAGTGCAGAAAAGGCAATTTTCATATTTGT 242 ||||| || ||||| ||||| || ||||| Sbjct 130 CAGTGCTGAGAAGGCGATTTTTATCTTTGT 159 >Niben101Scf04339g08020.1 sp|Q9SL04|ATG8D_ARATH *-*- Autophagy-related protein 8d IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain) Length=560 Score = 84.2 bits (45), Expect = 9e-16 Identities = 113/146 (77%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 49 GCTGAAGCTTCTAGGATTAGGGAAAAGTACCCCGATAGGATTCCGGTAATAGTTGAAAAG 108 || |||||| || | || ||||| ||||| || ||||| || ||||| || || || ||| Sbjct 121 GCCGAAGCTGCTCGTATCAGGGAGAAGTATCCTGATAGAATACCGGTTATTGTGGAGAAG 180 Query 109 GCGGAAAAGAGTGATATTCCCAACATTGACAAGAAAAAGT-A-T-CTTGTTCCAGCCGAC 165 || ||||| ||||| ||||| |||| ||||||||||||| | | |||||||| || || Sbjct 181 GCTGAAAAAAGTGACATTCCTGACATCGACAAGAAAAAGTTAATACTTGTTCCTGCTGAT 240 Query 166 TTAACAGTAGGGCAGTTTGTCTATGT 191 | | || ||||| ||||| ||||| Sbjct 241 CTGGCTGTGGGGCAATTTGTGTATGT 266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20221669725 Database: N.benthamiana Genome v1.0.1 predicted cDNA Posted date: Mar 21, 2024 4:04 PM Number of letters in database: 82,582,885 Number of sequences in database: 57,140 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5