BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= SLM6‐118

Length=48
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch06                                                             43.6    0.001


>SL4.0ch06 
Length=47258699

 Score = 43.6 bits (23),  Expect = 0.001
 Identities = 23/23 (100%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  26        CACATAACATGGAGTTCGACAGA  48
                 |||||||||||||||||||||||
Sbjct  35361225  CACATAACATGGAGTTCGACAGA  35361203


 Score = 38.1 bits (20),  Expect = 0.066
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1         TCCCAAAGTGCAATAGGACA  20
                 ||||||||||||||||||||
Sbjct  35361046  TCCCAAAGTGCAATAGGACA  35361065


 Score = 38.1 bits (20),  Expect = 0.066
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1         TCCCAAAGTGCAATAGGACA  20
                 ||||||||||||||||||||
Sbjct  36932483  TCCCAAAGTGCAATAGGACA  36932464



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 18780473304


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5