BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome cDNA (ITAG release 2.40)
           34,725 sequences; 41,981,568 total letters



Query= Untitled_sequence

Length=70
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc06g008590.2auxin-regulated IAA10 iaa10                           130     1e-30


>Solyc06g008590.2 auxin-regulated IAA10 iaa10
Length=966

 Score = 130 bits (70),  Expect = 1e-30
 Identities = 70/70 (100%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  1    ATGAGTAGTAATAAGTTGGATTTTGAGGAGACAGAATTAAGGCTAGGGTTGCCTGGTGGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  100  ATGAGTAGTAATAAGTTGGATTTTGAGGAGACAGAATTAAGGCTAGGGTTGCCTGGTGGA  159

Query  61   GCAAGAAAAA  70
            ||||||||||
Sbjct  160  GCAAGAAAAA  169



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 1978445664


  Database: Tomato Genome cDNA (ITAG release 2.40)
    Posted date:  Mar 21, 2024  3:33 PM
  Number of letters in database: 41,981,568
  Number of sequences in database:  34,725



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5