BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 2.40) 34,725 sequences; 41,981,568 total letters Query= XM_004251864.5 Length=2481 Score E Sequences producing significant alignments: (Bits) Value Solyc12g014600.1Heterogeneous nuclear ribonucleoprotein A3 (AHRD ... 2427 0.0 Solyc10g006050.2Heterogeneous nuclear ribonucleoprotein A3 (AHRD ... 1131 0.0 Solyc07g048030.2Heterogeneous nuclear ribonucleoprotein A3 (AHRD ... 427 2e-118 Solyc04g014820.2RNA-binding protein (AHRD V1 **-* B6TAS3_MAIZE); ... 364 1e-99 Solyc11g012470.1Heterogeneous nuclear ribonucleoprotein A3 (AHRD ... 361 2e-98 Solyc12g006180.1Heterogeneous nuclear ribonucleoprotein A3 (AHRD ... 291 2e-77 Solyc04g077520.2RNA binding protein (AHRD V1 **-* Q9C652_ARATH); ... 82.4 2e-14 >Solyc12g014600.1 Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 Length=1314 Score = 2427 bits (1314), Expect = 0.0 Identities = 1314/1314 (100%), Gaps = 0/1314 (0%) Strand=Plus/Plus Query 555 ATGAGAGATCGCAATACTGGTCGTGCTCGTGGTTTTGGTTTTGTTGTGTTTGCTAATCCT 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGAGATCGCAATACTGGTCGTGCTCGTGGTTTTGGTTTTGTTGTGTTTGCTAATCCT 60 Query 615 GCTGTTGCTGAAAGAGTTGTTAATGAGAAGCATATCATCGATGGGAGGACGGTTGAGGCA 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCTGTTGCTGAAAGAGTTGTTAATGAGAAGCATATCATCGATGGGAGGACGGTTGAGGCA 120 Query 675 AAGAAGGCTGTTCCGAGGGATGACCAACAAATAATAAATAGAAACAATAGCAGCATTCAC 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAGAAGGCTGTTCCGAGGGATGACCAACAAATAATAAATAGAAACAATAGCAGCATTCAC 180 Query 735 GGATCTCCAGGTCCTGGACGCACAAAAAAGATATTTGTAGGAGGTTTAGCATCTACGGTT 794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGATCTCCAGGTCCTGGACGCACAAAAAAGATATTTGTAGGAGGTTTAGCATCTACGGTT 240 Query 795 ACTGAGAGTGACTTCAAGACATACTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTG 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACTGAGAGTGACTTCAAGACATACTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTG 300 Query 855 ATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATAACTTATGATTCAGAG 914 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATAACTTATGATTCAGAG 360 Query 915 GATGCAGTGGATAGGGCATTGTATAAGACGTATCATGATCTAAATGGTAAAATGATCGAG 974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GATGCAGTGGATAGGGCATTGTATAAGACGTATCATGATCTAAATGGTAAAATGATCGAG 420 Query 975 GTGAAGCGCGCTGTTCCTAAAGAGCTGTCTCCGGGGCCCAACAGGAGCCCTTTCAATGGA 1034 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTGAAGCGCGCTGTTCCTAAAGAGCTGTCTCCGGGGCCCAACAGGAGCCCTTTCAATGGA 480 Query 1035 TTCAACTATGGACTTGGTAGAGTAAATAACTTTCTCAACAACTATGCTCAAGGGTATAGT 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TTCAACTATGGACTTGGTAGAGTAAATAACTTTCTCAACAACTATGCTCAAGGGTATAGT 540 Query 1095 TTAGGTTCGATTGGAGGATATGGGGTCAGGATGGATGGTAGATTTAGTCCAGTTGCCAGC 1154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTAGGTTCGATTGGAGGATATGGGGTCAGGATGGATGGTAGATTTAGTCCAGTTGCCAGC 600 Query 1155 GGACGTACAAGTTTCTCTCAGTTTTCTTCTCCTGCTTATGGAATGGGTGTCAATTTGGAC 1214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GGACGTACAAGTTTCTCTCAGTTTTCTTCTCCTGCTTATGGAATGGGTGTCAATTTGGAC 660 Query 1215 CCAGCTTTGAGCCCCACCTTTGCAGGAGCTTCCAATTTTAGCAACAATCTTGGTTATGGG 1274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCAGCTTTGAGCCCCACCTTTGCAGGAGCTTCCAATTTTAGCAACAATCTTGGTTATGGG 720 Query 1275 CGGGCTCTGAACCCGTATTTCACTGGCAACTCAAGCAGATACACTACACCCATTGGATAT 1334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CGGGCTCTGAACCCGTATTTCACTGGCAACTCAAGCAGATACACTACACCCATTGGATAT 780 Query 1335 AACACAGGCAGCAATAGAGGTGATTCTTTGCTTAGCTCACCAACCAGGAATGTATGGGGA 1394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AACACAGGCAGCAATAGAGGTGATTCTTTGCTTAGCTCACCAACCAGGAATGTATGGGGA 840 Query 1395 AATGGTGGACTTAACAGTTCTCCAGGTCCTGGTAGCTCCGGTTCATTTTTGGGATCCGGA 1454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AATGGTGGACTTAACAGTTCTCCAGGTCCTGGTAGCTCCGGTTCATTTTTGGGATCCGGA 900 Query 1455 ACTGGTGGTTATGGGGTCTTTGGGAATAATGGTGCCAATTGGGGCTCATCGGCTGTTTCT 1514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ACTGGTGGTTATGGGGTCTTTGGGAATAATGGTGCCAATTGGGGCTCATCGGCTGTTTCT 960 Query 1515 GCTCCAGTTGGTAGTGCTTCTGGATATGGTGGTCGGAATGTTGGGTTCAGGAATGGGGGA 1574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GCTCCAGTTGGTAGTGCTTCTGGATATGGTGGTCGGAATGTTGGGTTCAGGAATGGGGGA 1020 Query 1575 AGAAGTTATGGGCTGGGATCTGGAGGACTTGCAAGAAGCAATGCAGCAGGTGGTGTCCCA 1634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 AGAAGTTATGGGCTGGGATCTGGAGGACTTGCAAGAAGCAATGCAGCAGGTGGTGTCCCA 1080 Query 1635 ACTTCATTTGCTGCATCAGGTGGTGCTTATGAGGGGTCTTATGGAGATTTATATCGCAGT 1694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 ACTTCATTTGCTGCATCAGGTGGTGCTTATGAGGGGTCTTATGGAGATTTATATCGCAGT 1140 Query 1695 GGCTCCATGTATGGTGATTCAACATGGCAAACTGTGTCTTCTGATATGGAGGGCTCTAAT 1754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GGCTCCATGTATGGTGATTCAACATGGCAAACTGTGTCTTCTGATATGGAGGGCTCTAAT 1200 Query 1755 ACATTTGGATATGGACTTGAAAATCCAGCAGACGATTCAGCGAAAGACTCTGAAAATTAT 1814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 ACATTTGGATATGGACTTGAAAATCCAGCAGACGATTCAGCGAAAGACTCTGAAAATTAT 1260 Query 1815 ATTGGAAATTATAGTATTGCAAATAGACAATCGAATAGAGGAATCGCGGCATAG 1868 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 ATTGGAAATTATAGTATTGCAAATAGACAATCGAATAGAGGAATCGCGGCATAG 1314 >Solyc10g006050.2 Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 Length=1627 Score = 1131 bits (612), Expect = 0.0 Identities = 1087/1319 (82%), Gaps = 22/1319 (2%) Strand=Plus/Plus Query 555 ATGAGAGATCGCAATACTGGTCGTGCTCGTGGTTTTGGTTTTGTTGTGTTTGCTAATCCT 614 ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||| ||||| Sbjct 1 ATGAGGGATCGTAATACTGGCCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCTGATCCT 60 Query 615 GCTGTTGCTGAAAGAGTTGTTAATGAGAAGCATATCATCGATGGGAGGACGGTTGAGGCA 674 | ||||||||||||||| ||||| ||||||||||| || ||||| | |||||||||||| Sbjct 61 GTTGTTGCTGAAAGAGTAGTTAAGGAGAAGCATATGATTGATGGACGAACGGTTGAGGCA 120 Query 675 AAGAAGGCTGTTCCGAGGGATGACCAACAAATAATAAATAGAAACAATAGCAGCATTCAC 734 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 121 AAGAAGGCTGTTCCTAGGGATGATCAACAAATAATAAATAGAAACAATAGCAGCATTCAA 180 Query 735 GGATCTCCAGGTCCTGGACGCACAAAAAAGATATTTGTAGGAGGTTTAGCATCTACGGTT 794 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 181 GGATCTCCAGGTGGCGGACGCACAAAAAAGATATTTGTAGGAGGTTTAGCATCTACTGTC 240 Query 795 ACTGAGAGTGACTTCAAGACATACTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTG 854 || |||||||| || |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 ACGGAGAGTGATTTTAAGACATACTTTGATCAGTTTGGTACAATTACAGATGTCGTAGTG 300 Query 855 ATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATAACTTATGATTCAGAG 914 |||||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 301 ATGTATGACCATAATACTCAGAGGCCAAGAGGGTTTGGATTTATAACTTATGATTCGGAG 360 Query 915 GATGCAGTGGATAGGGCATTGTATAAGACGTATCATGATCTAAATGGTAAAATGATCGAG 974 || ||||| |||||| | |||| ||||| | |||||| ||||||||||||||| | || Sbjct 361 GAAGCAGTTGATAGGACTTTGTTTAAGATTTTTCATGAACTAAATGGTAAAATGGTTGAA 420 Query 975 GTGAAGCGCGCTGTTCCTAAAGAGCTGTCTCCGGGGCCCAACAGGAGCCCTTTCAATGGA 1034 || ||||| ||||| || || ||||| ||||| | ||| ||| | |||||| ||| ||| Sbjct 421 GTAAAGCGTGCTGTACCGAAGGAGCTATCTCCAGCGCCTAACTGTAGCCCTCTCATGGGA 480 Query 1035 TTCAACTATGGACTTGGTAGAGTAAATAACTTTCTCAACAACTATGCT-CA-AGGGT-AT 1091 | ||||||||||| ||||| || ||||| || |||||||||||| | ||||| || Sbjct 481 TACAACTATGGACACAATAGAGCCAACAACTTCCTTAACAACTATGCTGCTCAGGGTTAT 540 Query 1092 AGTTTAGGTTCGATTGGAGGATATGGGGTCAGGATGGATGGTAGATTTAGTCCAGTTGCC 1151 | | ||| ||| |||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 541 AATCTAGCGTCGGTTGGAGGATATGGGGTCAGGATGGATGGCAGGTTTAGTCCAGTTGCC 600 Query 1152 AGCGGACGTACAAGTTTCTCTCAGTTTTCTTCTCCTGCTTATGGAATGGGTGTCAATTTG 1211 | | ||| | |||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 601 GGTGCTCGTGCCGGTTTCTCTCAGTTTGCTTCTCCTGCTTATGGGATGGGTGTCAATTTG 660 Query 1212 GACCCAGCTTTGAGCCCCACCTTTGCAGGAGCTTCCAATTTTAGCAACAATCTTGGTTAT 1271 ||||| || ||||| |||||||||||||| |||||||| || ||||| |||||||| ||| Sbjct 661 GACCCGGCGTTGAGTCCCACCTTTGCAGGTGCTTCCAACTTCAGCAATAATCTTGGATAT 720 Query 1272 GGGCGGGCTCTGAACCCGTATTTCACTGGCAACTCAAGCAGATACACTACACCCATTGGA 1331 || ||| || ||||| |||||| || || ||||||||||||||||| || |||||| Sbjct 721 GGACGGATACTAAACCCATATTTCGGTGCAAATTCAAGCAGATACACTACTCCTATTGGA 780 Query 1332 TATAACACAGGCAGCAATAGAGGTGATTCTTTGCTTAGCTCACCAACCAGGAATGTATGG 1391 |||| |||| ||| |||||||| |||||||| || ||||| |||||||||||| ||||| Sbjct 781 TATAGCACAAGCAACAATAGAGCGGATTCTTTTCTAAGCTCCCCAACCAGGAATTTATGG 840 Query 1392 GGAAATGGTGGACTTAACAGTTCTCCAGGTCCTGGTAGCTCC-GGTTCATTTTTGGGATC 1450 |||||| ||| ||||| ||| || || ||||| | ||| ||||||||| | || || Sbjct 841 GGAAATATTGGCCTTAATGCTTCCGCAAGTTCTGGTGG-TCCAGGTTCATTTGTAGGCTC 899 Query 1451 CGGAACTGGTGGTTATGGGGTCTTTGGGAATAATGGTGCCAATTGGGGCTCATCGGCTGT 1510 |||| || |||||| ||||||||||||||| ||| |||||||| || || | | Sbjct 900 TGGAAGCGGAAATTATGGCGTCTTTGGGAATAATAATGCTAATTGGGGTTC-TCT--TAT 956 Query 1511 TTCTGCTCCAGTTGGTAGTGCTTCTGGATATGGTGGTCGGAATGTTGGGTTCAGGAATGG 1570 ||| | ||| | ||||| | ||||||||||||||||| |||| | ||||||| ||| Sbjct 957 TTCCGTTCCGGGTGGTAATTCTTCTGGATATGGTGGT-GGAAA-T----TTCAGGAGTGG 1010 Query 1571 GGGAAGAAGTTATGGGCTGGGATCTGGAGGACTTGCAAGAAGCAATGCAGCAGGTGGTGT 1630 || || | ||||||||||||||| |||||||||| |||| ||||| || | Sbjct 1011 GGAAAATAATTATGGGCTGGGATCGGGAGGACTTGGTAGAAATAATGCTGC---TACAAC 1067 Query 1631 CCCAACTTCATTTGCTGCATCAGGTGGTGCTTATGAGGGGTCTTATGGAGATTTATATCG 1690 | || || ||| | ||||| ||||||||| ||||||||||| |||||| || || Sbjct 1068 CTCA---TCGTTTACAACATCAACTGGTGCTTACGAGGGGTCTTACGGAGATCAATTCCG 1124 Query 1691 CAGTGGCTCCA-TGTATGGTGATTCAACATGGCAAACTGTGTCTTCTGATATGGAGGGCT 1749 ||| || || ||||||||||| ||| |||||| ||||||||||||| || || | Sbjct 1125 TGGTG-CTTCAGTGTATGGTGATCGAACTTGGCAAGGTGTGTCTTCTGATGCAGATGGTT 1183 Query 1750 CTAATACATTTGGATATGGACTTGAAAATCCAGCAGACGATTCAGCGAAAGACTCTGAAA 1809 || | |||||| |||||| ||| ||||||||| || | ||| || ||||| ||||| Sbjct 1184 CTGGTTCATTTGAATATGGTTTTGGAAATCCAGCTGATGTTTCTGCTAAAGAGTCTGAGG 1243 Query 1810 ATTATATTGGAAATTATAGTATTGCAAATAGACAATCGAATAGAGGAATCGCGGCATAG 1868 ||||||| |||||||||| |||||||||||| ||| ||||||||||||| || |||||| Sbjct 1244 ATTATATCGGAAATTATAATATTGCAAATAGGCAACCGAATAGAGGAATTGCAGCATAG 1302 >Solyc07g048030.2 Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 Length=1432 Score = 427 bits (231), Expect = 2e-118 Identities = 441/546 (81%), Gaps = 0/546 (0%) Strand=Plus/Plus Query 453 GATCTCGGTAAGCTATTTATTGGTGGGATATCTTGGGACACAGATGAAGAACGTCTTAAA 512 ||||| || ||| |||| |||||||| || || ||||||||| ||||||| ||||| || Sbjct 14 GATCTTGGGAAGTTATTCATTGGTGGAATTTCATGGGACACAAATGAAGAGCGTCTGAAG 73 Query 513 GAATATTTCACTTCGTATGGAGAAGTGATTGAAGCTGTGATCATGAGAGATCGCAATACT 572 || ||||| | | | ||||| || || | || ||||| || |||| ||| | | |||| Sbjct 74 GAGTATTTTAGTACTTATGGGGAGGTTTTAGAGGCTGTAATTATGAAGGATAGGACTACT 133 Query 573 GGTCGTGCTCGTGGTTTTGGTTTTGTTGTGTTTGCTAATCCTGCTGTTGCTGAAAGAGTT 632 || ||||| ||||||||||||||| |||| |||||| |||||||||||||||| || || Sbjct 134 GGACGTGCCCGTGGTTTTGGTTTTATTGTCTTTGCTGATCCTGCTGTTGCTGATAGGGTA 193 Query 633 GTTAATGAGAAGCATATCATCGATGGGAGGACGGTTGAGGCAAAGAAGGCTGTTCCGAGG 692 | || ||||| || | ||| ||||| |||| |||||| ||||||||||||||||| ||| Sbjct 194 ATCAAGGAGAAACACAACATTGATGGCAGGATGGTTGAAGCAAAGAAGGCTGTTCCTAGG 253 Query 693 GATGACCAACAAATAATAAATAGAAACAATAGCAGCATTCACGGATCTCCAGGTCCTGGA 752 |||||||| | ||||| ||||| || | |||||||| || ||||| ||||| ||| Sbjct 254 GATGACCAGAGCACAATAAGTAGAAGCAGTCCTAGCATTCAGGGTTCTCCTGGTCCAGGA 313 Query 753 CGCACAAAAAAGATATTTGTAGGAGGTTTAGCATCTACGGTTACTGAGAGTGACTTCAAG 812 || |||| ||| |||||||| |||||||||||||| || || ||||||| |||||| ||| Sbjct 314 CGTACAAGAAAAATATTTGTTGGAGGTTTAGCATCCACAGTAACTGAGACTGACTTTAAG 373 Query 813 ACATACTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTGATGTATGATCACAACACT 872 |||||||| || ||||| ||||| |||||||| ||||| ||||| || || |||||| Sbjct 374 GAGTACTTTGAGCAATTTGGAACAATCACAGATGTAGTAGTTATGTACGACCATAACACT 433 Query 873 CAGAGGCCAAGAGGCTTTGGATTTATAACTTATGATTCAGAGGATGCAGTGGATAGGGCA 932 ||||| |||||||||||||| || ||||||||||||||||||||||||||||||| | | Sbjct 434 CAGAGACCAAGAGGCTTTGGGTTCATAACTTATGATTCAGAGGATGCAGTGGATAAAGTA 493 Query 933 TTGTATAAGACGTATCATGATCTAAATGGTAAAATGATCGAGGTGAAGCGCGCTGTTCCT 992 ||| |||| | | ||||| || |||||||||||| ||||||| || || || || || Sbjct 494 TTGCTTAAGCCCTTCCATGAACTGAATGGTAAAATGGTCGAGGTCAAACGTGCAGTCCCC 553 Query 993 AAAGAG 998 |||||| Sbjct 554 AAAGAG 559 >Solyc04g014820.2 RNA-binding protein (AHRD V1 **-* B6TAS3_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 Length=1420 Score = 364 bits (197), Expect = 1e-99 Identities = 429/541 (79%), Gaps = 15/541 (3%) Strand=Plus/Plus Query 462 AAGCTATTTATTGGTGGGATATCTTGGGACACAGATGAAGAACGTCTTAAAGAATATTT- 520 ||| ||||| |||| ||||| |||||||||||| |||| || | || | ||||||||| Sbjct 254 AAG-TATTTGTTGGAGGGATTTCTTGGGACACAAATGATGATAGGCTCAGAGAATATTTT 312 Query 521 C-A-CTTCGTATGGAGAAGTGATTGAAGCTGTGATCATGAGAGATCGCAAT-ACTGGTCG 577 | | ||| | ||| || || |||||||||||||||||| |||||| ||| ||||| || Sbjct 313 CAAGCTT--T-TGGTGATGTAGTTGAAGCTGTGATCATGAAAGATCG-AATCACTGGCCG 368 Query 578 TGCTCGTGGTTTTGGTTTTGTTGTGTTTGCTAATCCTGCTGTTGCTGAAAGAGTTGTTAA 637 |||||||||||||||||||||||| ||||| | ||| | ||||||||| ||||||||| Sbjct 369 TGCTCGTGGTTTTGGTTTTGTTGTCTTTGCAGACCCTTCCATTGCTGAAAAAGTTGTTAA 428 Query 638 TGAGAAGCATATCATCGATGGGAGGACGGTTGAGGCAAAGAAGGCTGTTCCGAGGGATGA 697 || || || || || ||||| || || || |||||||| || |||||||||||||| || Sbjct 429 AGAAAAACACATTATTGATGGTAGAACTGTAGAGGCAAAAAAAGCTGTTCCGAGGGACGA 488 Query 698 CCAACAAATAATAAATAGAAACAATAGCAGCATTCACGGATCTCCAGGTCCTGGACGCAC 757 ||||| | | ||| | ||| | ||||| || || ||||||||||||| ||||| Sbjct 489 TCAACA--T-GTTAATCG---CAACGGAAGCATACAGGGTTCTCCAGGTCCTGCCCGCAC 542 Query 758 AAAAAAGATATTTGTAGGAGGTTTAGCATCTACGGTTACTGAGAGTGACTTCAAGACATA 817 | |||||| ||||| |||||||| ||||| | || ||||||||||| ||||||| || Sbjct 543 CAGAAAGATTTTTGTCGGAGGTTTGGCATCCTCAGTCACTGAGAGTGAATTCAAGAAGTA 602 Query 818 CTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTGATGTATGATCACAACACTCAGAG 877 ||||| || ||||| ||||| |||||||| || ||||||||||| || ||||| || || Sbjct 603 TTTTGACCAATTTGGGACAATCACAGATGTCGTGGTGATGTATGACCATAACACACAAAG 662 Query 878 GCCAAGAGGCTTTGGATTTATAACTTATGATTCAGAGGATGCAGTGGATAGGGCATTGTA 937 ||| ||||| |||||||| || || ||||| |||||||| ||||| ||||| | | | || Sbjct 663 GCCTAGAGGTTTTGGATTCATCACGTATGACTCAGAGGAAGCAGTTGATAGTGTACTATA 722 Query 938 TAAGACGTATCATGATCTAAATGGTAAAATGATCGAGGTGAAGCGCGCTGTTCCTAAAGA 997 || | | |||||| || |||||||||| | |||| || ||||| |||||||| ||||| Sbjct 723 CAAAATATTTCATGAACTTAATGGTAAAAGGGTCGAAGTCAAGCGTGCTGTTCCAAAAGA 782 Query 998 G 998 | Sbjct 783 G 783 >Solyc11g012470.1 Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 Length=1287 Score = 361 bits (195), Expect = 2e-98 Identities = 460/591 (78%), Gaps = 5/591 (1%) Strand=Plus/Plus Query 555 ATGAGAGATCGCAATACTGGTCGTGCTCGTGGTTTTGGTTTTGTTGTGTTTGCTAATCCT 614 |||| |||||| | |||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 1 ATGAAAGATCGGATCACTGGTCGTGCTCGTGGTTTTGGTTTTGTTGTTTTTGCAGACCCT 60 Query 615 GCTGTTGCTGAAAGAGTTGTTAATGAGAAGCATATCATCGATGGGAGGACGGTTGAGGCA 674 ||||||| ||||||||||| || || || || || || ||||| || || || |||||| Sbjct 61 TCTGTTGCCGAAAGAGTTGTGAAGGAAAAACACATAATTGATGGTAGAACTGTAGAGGCA 120 Query 675 AAGAAGGCTGTTCCGAGGGATGACCAACAAATAATAAATAGAAACAATAGCAGCATTCAC 734 |||||||||||||| || ||||| ||||| || || ||||||||| | || || || Sbjct 121 AAGAAGGCTGTTCCAAGAGATGATCAACACAT--TACC-AGAAACAATGGTAGTATGCAG 177 Query 735 GGATCTCCAGGTCCTGGACGCACAAAAAAGATATTTGTAGGAGGTTTAGCATCTACGGTT 794 || ||||||||||| | ||||| |||||||| ||||| |||||||| ||||| | || Sbjct 178 GGTTCTCCAGGTCCAGCTCGCACTAAAAAGATTTTTGTTGGAGGTTTGGCATCCTCAGTC 237 Query 795 ACTGAGAGTGACTTCAAGACATACTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTG 854 || |||||||||||||||| ||||||||||| ||||| || || || ||||||||||| Sbjct 238 ACCGAGAGTGACTTCAAGAATTACTTTGATCAATTTGGGACGATCACCGATGTTGTAGTA 297 Query 855 ATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATAACTTATGATTCAGAG 914 ||||||||||||||||| || ||||| ||||||||||||||||| |||| ||| |||||| Sbjct 298 ATGTATGATCACAACACACAAAGGCCTAGAGGCTTTGGATTTATTACTTTTGACTCAGAG 357 Query 915 GATGCAGTGGATAGGGCATTGTATAAGACGTATCATGATCTAAATGGTAAAATGATCGAG 974 || ||||| |||| | | || ||| ||| |||||| || || ||||| ||| | ||| Sbjct 358 GAGGCAGTTGATAAAGTTCTATACAAGGCGTTTCATGAACTTAACGGTAAGATGGTTGAG 417 Query 975 GTGAAGCGCGCTGTTCCTAAAGAGCTGTCTCCGGGGCCCAACAGGAGCCCTTTCAATGGA 1034 || || || || || || ||||||||||| || | || | | ||||| || |||||| Sbjct 418 GTTAAACGTGCAGTACCCAAAGAGCTGTCACCTAGTCCAGCCCGAAGCCCATTTAATGGA 477 Query 1035 TTCAACTATGGACTTGGTAGAGTAAATAACTTTCTCAACAACTATGCTCAAGGGTATAGT 1094 |||||||| ||| ||| || || || || || || ||| | ||||| || || Sbjct 478 CAGAACTATGGTCTTAATAGGGTTAACAATTTGCTTAATGCATATACCCAAGGTTAC-GT 536 Query 1095 TT-AGGTTCGATTGGAGGATATGGGGTCAGGATGGATGGTAGATTTAGTCC 1144 | | | ||||||||| ||||| | || ||||| ||||||| ||||| Sbjct 537 TCCAAGCTCGATTGGAAATTATGGAATGAGAATGGAAGGTAGATACAGTCC 587 >Solyc12g006180.1 Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 Length=1317 Score = 291 bits (157), Expect = 2e-77 Identities = 345/437 (79%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 569 TACTGGTCGTGCTCGTGGTTTTGGTTTTGTTGTGTTTGCTAATCCTGCTGTTGCTGAAAG 628 |||||| |||||||||||||| |||||||| || |||||| ||||||||| |||||| || Sbjct 15 TACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAG 74 Query 629 AGTTGTTAATGAGAAGCATATCATCGATGGGAGGACGGTTGAGGCAAAGAAGGCTGTTCC 688 || || || ||||| || | ||| ||||| |||| ||| || ||||||| ||| ||||| Sbjct 75 GGTAGTAAAGGAGAAACACAACATTGATGGCAGGATGGTAGAAGCAAAGAGGGCAGTTCC 134 Query 689 GAGGGATGACCAACAAATAATAAATAGAAACAATAGCAGCATTCACGGATCTCC-A---- 743 |||||||||| | | || ||||| || | || ||||| || ||||| | Sbjct 135 ACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCC 194 Query 744 -GGTCCTGGACGCACAAAAAAGATATTTGTAGGAGGTTTAGCATCTACGGTTACTGAGAG 802 ||||| ||||| |||| |||||| || || || ||||||||||| || || ||||||| Sbjct 195 TGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGAC 254 Query 803 TGACTTCAAGACA-TACTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTGATGTATG 861 || ||| ||| || || ||||| || ||||| ||||| ||||||| ||||| ||||||| Sbjct 255 TGCCTTTAAG-CAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATG 313 Query 862 ATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATAACTTATGATTCAGAGGATGCAG 921 |||| |||||||| ||||| || || |||||||| || |||||||||||||||||||||| Sbjct 314 ATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAG 373 Query 922 TGGATAGGGCATTGTATAAGACGTATCATGATCTAAATGGTAAAATGATCGAGGTGAAGC 981 |||||| | ||| ||| | || ||||| || |||| ||||||| | ||||| |||| Sbjct 374 TGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGC 433 Query 982 GCGCTGTTCCTAAAGAG 998 |||||||||| |||||| Sbjct 434 GCGCTGTTCCCAAAGAG 450 >Solyc04g077520.2 RNA binding protein (AHRD V1 **-* Q9C652_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait Length=1477 Score = 82.4 bits (44), Expect = 2e-14 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 756 ACAAAAAAGATATTTGTAGGAGGTTTAGCATCTACGGTTACTGAGAGTGACTTCAAGACA 815 || || ||||| |||||||| || ||| || ||| | | | || || ||||||| Sbjct 557 ACCAAGAAGATTTTTGTAGGGGGGTTATCAGCTAGCCTAAATCAGGAAGAGTTCAAGAGT 616 Query 816 TACTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTGATGTATGATCACAAC-ACTCA 874 |||||||| |||||||| |||||||||||||| |||||| |||| || || || Sbjct 617 TACTTTGAAAGGTTTGGTAATATTACAGATGTTGTTGTGATGCATGA-CAATGTTACCCA 675 Query 875 GAGGCCAAGAGGCTTTGGATTTATAACTTATGATTCAGAGGATGCAGT 922 |||||||| || ||||| ||||| || | |||||| ||||||||||| Sbjct 676 TAGGCCAAGGGGATTTGGTTTTATTACCTTTGATTCGGAGGATGCAGT 723 Lambda K H 1.34 0.623 1.13 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100848252690 Database: Tomato Genome cDNA (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 41,981,568 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5