BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch01                                                             34.4    0.11 
SL4.0ch05                                                             32.5    0.38 


>SL4.0ch01 
Length=90863682

 Score = 34.4 bits (18),  Expect = 0.11
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1         TCCTACCTTTACCAACCT  18
                 ||||||||||||||||||
Sbjct  69640548  TCCTACCTTTACCAACCT  69640565


>SL4.0ch05 
Length=65269487

 Score = 32.5 bits (17),  Expect = 0.38
 Identities = 22/24 (92%), Gaps = 1/24 (4%)
 Strand=Plus/Plus

Query  1         TCCTACCTTTACCAACCTCAAGAG  24
                 ||||| |||||||||||| |||||
Sbjct  22864934  TCCTA-CTTTACCAACCTGAAGAG  22864956



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 2347559280


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5