BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 2.40) 34,725 sequences; 41,981,568 total letters Query= Untitled_sequence Length=888 Score E Sequences producing significant alignments: (Bits) Value Solyc04g015520.2DNA binding protein (AHRD V1 **** B6TND2_MAIZE); ... 405 3e-112 Solyc10g080230.1DNA binding protein-like (AHRD V1 ***- Q84ZN5_ORY... 215 5e-55 Solyc10g080240.1Remorin family protein (AHRD V1 ***- D7LHZ1_ARALY... 167 2e-40 >Solyc04g015520.2 DNA binding protein (AHRD V1 **** B6TND2_MAIZE); contains Interpro domain(s) IPR005516 Remorin, C-terminal region Length=1389 Score = 405 bits (219), Expect = 3e-112 Identities = 330/384 (86%), Gaps = 5/384 (1%) Strand=Plus/Plus Query 509 TGAGTGGAATTA---ACCATGGAGAAGTTACTGTTGAAAGGGTGAAAAAAGAAGAGGTTG 565 |||||||||||| | || |||||||| | ||| | || ||||| ||||| || |||| Sbjct 738 TGAGTGGAATTAGTCAACAAGGAGAAGTGATTGTACATAGAGTGAAGAAAGAGGAAGTTG 797 Query 566 AATCAAAGATTAATGCATGGCATAATGCTAAAATTTCAAAGATTAATAACAGGTTTAAGC 625 |||||||||||| ||||||||| | ||| |||||| ||||||||||||| ||||||||| Sbjct 798 AATCAAAGATTAGTGCATGGCAAACTGCAAAAATTGCAAAGATTAATAATAGGTTTAAGT 857 Query 626 GTGAAGATGCTGTTATTATTGGCTGGGAAAGTGAGGAGGTCCAAAAAGCTACTTCTTGGA 685 ||||||||||||| |||| ||| ||||||| ||| || |||||||| |||||||| |||| Sbjct 858 GTGAAGATGCTGTGATTAATGGATGGGAAAATGAAGAAGTCCAAAAGGCTACTTCATGGA 917 Query 686 TGAAGAAAGTTGAGAGGAAGCTGGAGGAGAAGAGAGCAAAAGCCCTAGAGAAGATGCAGA 745 |||||||||||||||||||| | ||||| || ||||||||||| ||||| |||||||| | Sbjct 918 TGAAGAAAGTTGAGAGGAAGTTAGAGGAAAAAAGAGCAAAAGCACTAGAAAAGATGCAAA 977 Query 746 ATGATATAGCAAAAGCAAGGAGAAAGGCAGAGGAAAGAAGGGCATCTGCTGAAGCAAAGA 805 ||||||||||||| ||||| ||||| ||||||||||||| |||||| || |||||||| | Sbjct 978 ATGATATAGCAAATGCAAGAAGAAAAGCAGAGGAAAGAAAGGCATCAGCAGAAGCAAAAA 1037 Query 806 GAGGGACAAAAGTTGCTAAAGTTCTTGAAATTTG-CAATTTGATGAGAGCTGTTGGTAGA 864 |||| |||||||| |||| |||| ||||| || | ||||||||||||||||||||||||| Sbjct 1038 GAGGAACAAAAGTAGCTAGAGTTGTTGAA-TTAGCCAATTTGATGAGAGCTGTTGGTAGA 1096 Query 865 GCTCCCGCTAAGCGTTCCTTCTTT 888 ||||| | || |||||||||||| Sbjct 1097 GCTCCAACAAAACGTTCCTTCTTT 1120 Score = 84.2 bits (45), Expect = 2e-15 Identities = 122/159 (77%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 148 AATCGTGGCCGTCGAAGAGAAACTTGGGAAACTAATAGCCACAGATCATCCACAAATTTA 207 |||||||| || | || ||| |||||||||| | ||| || ||||||| || ||| Sbjct 377 AATCGTGGACGAAGGAGGGAAGCTTGGGAAACAAGTAGTCATAGATCAT---CATCTTTG 433 Query 208 TCAACAGCCAGTACAGAAGTAGCATCAAGTGAAAATTTCTCAACCATGAGTAGAGAATTC 267 || ||| ||| || || || ||||||| |||||| |||||||||||||||| ||| Sbjct 434 TCCTCAG--AGT-TAGGAGGAGTTCCAAGTGAGAATTTCACAACCATGAGTAGAGAGTTC 490 Query 268 AATGCTTTAGTTCTTGCTGGATCTTCAATAAGCAACAAC 306 ||||| || || |||||||||||||| | | ||||||| Sbjct 491 AATGCCTTGGTACTTGCTGGATCTTCTACCAACAACAAC 529 >Solyc10g080230.1 DNA binding protein-like (AHRD V1 ***- Q84ZN5_ORYSJ); contains Interpro domain(s) IPR005516 Remorin, C-terminal region Length=477 Score = 215 bits (116), Expect = 5e-55 Identities = 288/368 (78%), Gaps = 23/368 (6%) Strand=Plus/Plus Query 346 AATAACAATAGCAATATTTTGGGAAGAATTGGTGAAGATG---ATTATGAAACAATTGAA 402 ||| | |||||||||| |||||| || || || ||||| | || ||| | || ||| Sbjct 100 AATTATAATAGCAATAATTTGGGGAGCATCGGCGAAGAAGAAAATGATGCGCCGATAGAA 159 Query 403 GAAACAAATCCTTTAGCTATTGTTCCAGATAATTATAGTAACCCTTTGAGTTTGGACACT 462 ||||||||||| ||||||||||| || |||||||||||||| |||| || | | | Sbjct 160 GAAACAAATCCGTTAGCTATTGTGCCGGATAATTATAGTAATACTTT-AG-AT---C-CG 213 Query 463 ATTAATAATAATTCTTCTTCTAG-A-GA-TCAT-GTGGT--TATTAATTCTGTGAGTG-G 515 |||| | |||| | |||| || | || | || | | || |||| ||| || | Sbjct 214 ATTATTGTTAAT-C--CTTCAAGAAGGATTAATAATAATAATAATAATAATGT-TTTGAG 269 Query 516 AATTAACCATGGAGAAGT---TACTGTTGAAAGGGTGAAAAAAGAAGAGGTTGAATCAAA 572 || ||| ||||||||| || |||| |||| |||||||||||||| ||||||| || Sbjct 270 AAATAATATTGGAGAAGTAAGTAGTGTTCAAAGAGTGAAAAAAGAAGAAATTGAATCGAA 329 Query 573 GATTAATGCATGGCATAATGCTAAAATTTCAAAGATTAATAACAGGTTTAAGCGTGAAGA 632 ||| | ||||||||| |||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 330 GATAAGTGCATGGCAAAATGCTAAAATTTCGAAGATTAATAATAGGTTTAAACGTGAAGA 389 Query 633 TGCTGTTATTATTGGCTGGGAAAGTGAGGAGGTCCAAAAAGCTACTTCTTGGATGAAGAA 692 ||||||||||| ||| ||||||||||| || || ||||||||||||||||||||||| || Sbjct 390 TGCTGTTATTAATGGATGGGAAAGTGAAGAAGTACAAAAAGCTACTTCTTGGATGAAAAA 449 Query 693 AGTTGAGA 700 | |||||| Sbjct 450 AATTGAGA 457 >Solyc10g080240.1 Remorin family protein (AHRD V1 ***- D7LHZ1_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region Length=153 Score = 167 bits (90), Expect = 2e-40 Identities = 130/150 (87%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 739 ATGCAGAATGATATAGCAAAAGCAAGGAGAAAGGCAGAGGAAAGAAGGGCATCTGCTGAA 798 ||||| ||||||||||||| |||| ||||| ||||| |||| || |||||| || ||| Sbjct 1 ATGCAAAATGATATAGCAATAGCACACAGAAAAGCAGAAGAAAAAAAGGCATCAGCAGAA 60 Query 799 GCAAAGAGAGGGACAAAAGTTGCTAAAGTTCTTGAAATTTGCAATTTGATGAGAGCTGTT 858 ||||||||||| |||||||| || |||||| ||||||||| ||||||||||||||||||| Sbjct 61 GCAAAGAGAGGAACAAAAGTAGCAAAAGTTGTTGAAATTTCCAATTTGATGAGAGCTGTT 120 Query 859 GGTAGAGCTCCCGCTAAGCGTTCCTTCTTT 888 || |||||||| ||||| || ||||||||| Sbjct 121 GGCAGAGCTCCAGCTAAACGATCCTTCTTT 150 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35480901309 Database: Tomato Genome cDNA (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 41,981,568 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5