BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome CDS (ITAG release 4.0) 34,075 sequences; 34,993,605 total letters Query= Length=989 Score E Sequences producing significant alignments: (Bits) Value Solyc12g057150.1.1 429 2e-119 Solyc12g057160.1.1 409 2e-113 Solyc12g057140.1.1 370 1e-101 Solyc12g087790.1.1 195 6e-49 Solyc04g074730.1.1 71.3 1e-11 >Solyc12g057150.1.1 Length=348 Score = 429 bits (232), Expect = 2e-119 Identities = 302/334 (90%), Gaps = 12/334 (4%) Strand=Plus/Minus Query 611 ATGGCATACTCAAAGGTGATTATTGCTCTAATGTTGGCGTTTATTGCCGGATCTGCTTTC 670 ||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||| Sbjct 338 ATGGCGTACTCAAAGGTGATTATTGCGTTAATGTTGGCATTTATCGCCGGATCTGCTTTC 279 Query 671 GCACAGGCACCGGGAGCATCTCCGGCATCTTCTCCGAAGAGTTCTCCGGCACCGGTAGCA 730 ||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||||||| Sbjct 278 GCACAGGCACCGGGAACATCTCCGGCAGCTTCTCCGAAGATTTCACCGGCACCGGTAGCA 219 Query 731 TCACCACCGGTGGCGACTCCTCCTCCTATCGTTGCCCCTGCAAATCCTCCTACTACTGCA 790 |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 218 TCACCACCGGTGGCTACTCCATCACCTATCGTTGCCCCTGCAAATCCTCCTACTACTGCA 159 Query 791 TCT------------TCTCCATTGGCATCTCCACCAGCTCCACCAACTGCCGAGACTCCG 838 ||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 158 TCTCCTCCATCTGATTCTCCATTGGCATCTCCACCTGCTCCACCAACTGCCGAGACTCCG 99 Query 839 GCGTCGTCTCCTTCCGGTGCTGCTTCTCCTCCATCCATTGCCGCCGCTCCCGGAAGTTCT 898 |||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| Sbjct 98 GCGTCGTCTCCTTCCGGTGCTGCTTCTCCTCCGTCTATTGCCGCCGCTCCCGGAGGTTCT 39 Query 899 CCTACTGAATCTCCAAACTCTGGTTCCTTGAACA 932 |||||||||||||| ||||||| ||| ||||||| Sbjct 38 CCTACTGAATCTCCTAACTCTGCTTCGTTGAACA 5 >Solyc12g057160.1.1 Length=399 Score = 409 bits (221), Expect = 2e-113 Identities = 321/366 (88%), Gaps = 19/366 (5%) Strand=Plus/Plus Query 611 ATGGCATACTCAAAGGTGATTATTGCTCTAATGTTGGCGTTTATTGCCGGATCTGCTTTC 670 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGCATACTCAAAGGTGATAATTGCTCTAATGTTGGCGTTTATCGCCGGATCTGCTTTC 60 Query 671 GCACAGGCACCGGGAGCATCTCCGGCATCTTCTCCGAAGAGTTCTCCGGCACCGGTAGCA 730 |||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||| Sbjct 61 GCACAGGCACCGGGAGCAGCTCCGGCAGCTTCTCCGAAGATTTCACCGGCACCGGTAGCA 120 Query 731 TCACCACCGGTGGCGACTCCTCC-T---C--C-T----AT---C---GT-TGCCCCTGCA 772 |||||||||||||| |||||||| | | | | || | | ||| |||||| Sbjct 121 TCACCACCGGTGGCTACTCCTCCGTCAACAACGTCAACATCACCTATCTCTGCTCCTGCA 180 Query 773 AATCCTCCTACTACTGCATCTTCTCCATTGGCATCTCCACCAGCTCCACCAACTGCCGAG 832 ||| |||||||||||||||||||||||||||||||||| || |||||||||||| ||||| Sbjct 181 AATGCTCCTACTACTGCATCTTCTCCATTGGCATCTCCTCCGGCTCCACCAACTTCCGAG 240 Query 833 ACTCCGGCGTCGTCTCCTTCCGGTGCTGCTTCTCCTCCATCCATTGCCGCCGCTCCCGGA 892 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 241 ACTCCGGCGTCGTCTCCTTCCGGTGCTGCTTCTCCTCCGTCTATTGCCGCCGCTCCCGGA 300 Query 893 AGTTCTCCTACTGAATCTCCAAACTCTGGTTCCTTGAACAAAATCCCCGTCCCCGGAACT 952 |||||||| |||||||||| ||||||| ||| ||||||| | || |||| ||||| || Sbjct 301 GGTTCTCCTTCTGAATCTCCTAACTCTGCTTCATTGAACAGAGTCGCCGTTGCCGGATCT 360 Query 953 GCGTGT 958 || ||| Sbjct 361 GC-TGT 365 >Solyc12g057140.1.1 Length=411 Score = 370 bits (200), Expect = 1e-101 Identities = 335/394 (85%), Gaps = 33/394 (8%) Strand=Plus/Plus Query 611 ATGGCATACTCAAAGGTGATTATTGCTCTAATGTTGGCGTTTATTGCCGGATCTGCTTTC 670 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGCATACTCAAAGGTGATTATTGCTCTAATGTTGGCGTTTATCGCCGGATCTGCTTTC 60 Query 671 GCACAGGCACCGGGAGCATCTCCGGCATCTTCTCCGAAGAGTTCTCCGGCACCGGTAGCA 730 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 61 GCACAGGCACCGGGAGCATCTCCAGCATCTTCTCCGAAGAGTTCTCCGGCACCGGTGGCA 120 Query 731 TCACCACCGGTGGCGACTCCTCCT------------------CCTATCGTTGCCCCTGCA 772 || ||||||||||||||||||||| |||||||||||||||||| Sbjct 121 TCGCCACCGGTGGCGACTCCTCCTCCTACTACATCAACACCACCTATCGTTGCCCCTGCA 180 Query 773 AATCCTCCTACTACTGCATCTTCTCCAT-TGGC-----A------TCTCCACCAGCTCCA 820 |||||||||||||||||||||||||||| || | | ||||||||||||||| Sbjct 181 AATCCTCCTACTACTGCATCTTCTCCATCTGACTCTCCATTAGCTTCTCCACCAGCTCCA 240 Query 821 CCAACTGCCGAGACTCCGGCGTCGTCTCCTTCCGGTGCTGCTTCTCCTCCATCCATTGCC 880 |||||||||||||||||| | || ||||||||||||||||||||||||||| |||| ||| Sbjct 241 CCAACTGCCGAGACTCCGTCATCATCTCCTTCCGGTGCTGCTTCTCCTCCAACCATCGCC 300 Query 881 GCCGCTCCCGGAAGTTCTCCTACTGAATCTCCAAACTCTGGTTCCTTGAACAAAATCCCC 940 ||| |||||||| ||||||||| | |||||| ||||||| ||||||||||| || || Sbjct 301 GCCACTCCCGGAGATTCTCCTACCGCATCTCCTAACTCTGCTTCCTTGAACAGGGTCGCC 360 Query 941 GTCCCCGGAACTGC-GTGTGGAAACTGGGTTTGC 973 ||| ||||| |||| || || | ||| |||||| Sbjct 361 GTCGCCGGATCTGCCGT-TGCAG-CTGTGTTTGC 392 >Solyc12g087790.1.1 Length=156 Score = 195 bits (105), Expect = 6e-49 Identities = 105/105 (100%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 772 AAATCCTCCTACTACTGCATCTTCTCCATTGGCATCTCCACCAGCTCCACCAACTGCCGA 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105 AAATCCTCCTACTACTGCATCTTCTCCATTGGCATCTCCACCAGCTCCACCAACTGCCGA 46 Query 832 GACTCCGGCGTCGTCTCCTTCCGGTGCTGCTTCTCCTCCATCCAT 876 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45 GACTCCGGCGTCGTCTCCTTCCGGTGCTGCTTCTCCTCCATCCAT 1 Score = 95.3 bits (51), Expect = 7e-19 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 651 TTATTGCCGGATCTGCTTTCGCACAGGCACCGGGAGCATCTCCGGCATCTT 701 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156 TTATTGCCGGATCTGCTTTCGCACAGGCACCGGGAGCATCTCCGGCATCTT 106 >Solyc04g074730.1.1 Length=396 Score = 71.3 bits (38), Expect = 1e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 630 TTATTGCTCTAATGTTGGCGTTTATTGCCGGATCTGCTTTCGCACAGGCACCGGGAGCAT 689 || ||||| | ||||| || || | |||||||||||||| || || || |||||||| | Sbjct 23 TTGTTGCTTTCATGTTCGCTTTGGTCGCCGGATCTGCTTTTGCTCAAGCTCCGGGAGCTT 82 Query 690 CTCCGGCATCTTCTCCGAAGAGTTCTCCGGCACCGGTAGCA 730 |||||| | |||| ||||| ||||||| |||||||||| Sbjct 83 CTCCGGTAGCTTCACCGAAACCGTCTCCGGTACCGGTAGCA 123 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32912627720 Database: Tomato Genome CDS (ITAG release 4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 34,993,605 Number of sequences in database: 34,075 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5