BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 2.40) 34,725 sequences; 41,981,568 total letters Query= Untitled_sequence Length=1120 Score E Sequences producing significant alignments: (Bits) Value Solyc04g007000.1Ethylene-responsive transcription factor 4 (AHRD ... 2001 0.0 Solyc05g009790.1Transcription factor (AHRD V1 *-** D6MKM9_9ASPA);... 315 7e-85 Solyc08g013700.1Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAI... 100 2e-20 Solyc08g013690.1Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAI... 100 2e-20 Solyc09g010230.1Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAI... 89.8 4e-17 Solyc10g083210.1Auxin response factor 1 (AHRD V1 *-*- D9HNS8_MAIZ... 75.0 1e-12 Solyc03g083110.1AP2 domain-containing transcription factor (AHRD ... 71.3 2e-11 >Solyc04g007000.1 Ethylene-responsive transcription factor 4 (AHRD V1 *-** ERF78_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 Length=1119 Score = 2001 bits (1083), Expect = 0.0 Identities = 1113/1125 (99%), Gaps = 11/1125 (1%) Strand=Plus/Plus Query 1 ATGGAGGTAAGTTGCATAGATCAAGAAATTAGCACAACTAGTGACTCCCCATCAACCATT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGGTAAGTTGCATAGATCAAGAAATTAGCACAACTAGTGACTCCCCATCAACCATT 60 Query 61 TCCCCGGCGGGGTCTCCCCGCCAGATGGGAAGTGGAGTCAGCGTTGTAACAGACGCTGAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCCCCGGCGGGGTCTCCCCGCCAGATGGGAAGTGGAGTCAGCGTTGTAACAGACGCTGAC 120 Query 121 TCCACAAACGGTGTAGAAGCAGAGTCGAAAAATACTACTATTACTAATAATAACAACAAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCACAAACGGTGTAGAAGCAGAGTCGAAAAATACTACTATTACTAATAATAACAACAAT 180 Query 181 AAGCTTCCTTCTTCAAAGTTCAAAGGTGTTGTCCCTCAACCAAATGGTCGATGGGGTGCA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAGCTTCCTTCTTCAAAGTTCAAAGGTGTTGTCCCTCAACCAAATGGTCGATGGGGTGCA 240 Query 241 CAAATCTACGAAAAACATCAAAGGATTTGGCTTGGTACGTTCAATGGCGAAGAAGAAGCA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CAAATCTACGAAAAACATCAAAGGATTTGGCTTGGTACGTTCAATGGCGAAGAAGAAGCA 300 Query 301 GCAAGAGCTTATGATATCGCGGCACAGAGATTCCGTGGTAGAGATGCCGTAACAAATTTC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCAAGAGCTTATGATATCGCGGCACAGAGATTCCGTGGTAGAGATGCCGTAACAAATTTC 360 Query 361 AAACCCCTGTTTGATTTTCAAACAGAGGAAATCGAGATCTCATTTTTGAACTCTCGTTCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAACCCCTGTTTGATTTTCAAACAGAGGAAATCGAGATCTCATTTTTGAACTCTCGTTCT 420 Query 421 AAGGTTGAGATAGTTGAAATGTTACGTAAACACACGTATAATGACGAACTTCAACATGCC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGGTTGAGATAGTTGAAATGTTACGTAAACACACGTATAATGACGAACTTCAACATGCC 480 Query 481 AAGAAAGTATATAACAACAATACTTTCGAGATGAATGGAAGGAGCACATGCCATACTAAT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AAGAAAGTATATAACAACAATACTTTCGAGATGAATGGAAGGAGCACATGCCATACTAAT 540 Query 541 ACTAATATCGCGACTTTTTCATTAGATACTAATGAAAAAGTCGCGAATATAGCTAGTGAA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ACTAATATCGCGACTTTTTCATTAGATACTAATGAAAAAGTCGCGAATATAGCTAGTGAA 600 Query 601 CTGCTTTTTGAAAAAGTAGTTACACCGAGCGACGTTGGAAAACTTAATAGGCTTGTTATT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTGCTTTTTGAAAAAGTAGTTACACCGAGCGACGTTGGAAAACTTAATAGGCTTGTTATT 660 Query 661 CCAAAACAACACGCAGAGAGATATTTCCCTTTGGTTGCCAAAGTAAATAAAAATGATAAT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCAAAACAACACGCAGAGAGATATTTCCCTTTGGTTGCCAAAGTAAATAAAAATGATAAT 720 Query 721 ACTTCTAAAGGGGTATTATTAAATTTCGAAGATATGAATGGGAAAATGTGGCGATTTCGA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 ACTTCTAAAGGGGTATTATTAAATTTCGAAGATATGAATGGGAAAATGTGGCGATTTCGA 780 Query 781 TATTCGTATTGGAATAGTAGTCAAAGTTACGTATTAACTAAAGGATGGAGTCGTTACGTT 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TATTCGTATTGGAATAGTAGTCAAAGTTACGTATTAACTAAAGGATGGAGTCGTTACGTT 840 Query 841 AAGGAAAAAAAGTTGAAGGCCGGAGATATAGTGAGTTTCAAACGATGTTCTGGAGTTGAA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AAGGAAAAAAAGTTGAAGGCCGGAGATATAGTGAGTTTCAAACGATGTTCTGGAGTTGAA 900 Query 901 ATCGAAGATAAACTTCTTATTGATTCGAAGAACAGAATAATACGAGGCGAACAAGTAAAA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ATCGAAGATAAACTTCTTATTGATTCGAAGAACAGAATAATACGAGGCGAACAAGTAAAA 960 Query 961 ATGGTTAGATTATTTGGAGTGAATATATGTAAGGTTCAAGATGTTAGTAATAATGTTGTT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 ATGGTTAGATTATTTGGAGTGAATATATGTAAGGTTCAAGATGTTAGTAATAATGTTGTT 1020 Query 1021 G---AGAAAA--ATGAGTGTTGGCAAAAGAATGAGGAGGAGGAGGAGGAGGTTGTTGGCA 1075 | |||||| |||||||||||||||||||||||| | || | | | | |||||||||| Sbjct 1021 GTTGAGAAAAATATGAGTGTTGGCAAAAGAATGAGG-G-AG-ATG-G-A-GTTGTTGGCA 1074 Query 1076 TTTGAGTGTAGCAAGAAACAAAGGGTAATAATTGATGCCTTGTGA 1120 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 TTTGAGTGTAGCAAGAAACAAAGGGTAATAATTGATGCCTTGTGA 1119 >Solyc05g009790.1 Transcription factor (AHRD V1 *-** D6MKM9_9ASPA); contains Interpro domain(s) IPR003340 Transcriptional factor B3 Length=1188 Score = 315 bits (170), Expect = 7e-85 Identities = 547/724 (76%), Gaps = 45/724 (6%) Strand=Plus/Plus Query 174 CAACAATAAGCTTCCTTCTTCAAAGTTCAAAGGTGTTGTCCCTCAACCAAATGGTCGATG 233 ||| || || || || ||||||| || ||||||||| ||||| |||||||||||||| || Sbjct 194 CAAGAA-AA-CTCCCATCTTCAAGGTACAAAGGTGTGGTCCCACAACCAAATGGTCGTTG 251 Query 234 GGGTGCACAAATCTACGAAAAACATCAAAGGATTTGGCTTGGTACGTTCAATGGCGAAGA 293 ||| ||||||||||| ||||| ||||| ||| | ||| | || || ||||| | ||| | Sbjct 252 GGGCGCACAAATCTATGAAAAGCATCAGAGGGTATGGTTAGGCACATTCAACGAGGAAAA 311 Query 294 AGAAGCAGCAAGAGCTTATGATATCGCGGCACAGAGATTCCGTGGTAGAGATGCCGTAAC 353 ||||| || || |||||||| |||||||| ||||||||| | || | || || ||||| Sbjct 312 TGAAGCCGCTAGGGCTTATGACATCGCGGCCCAGAGATTCAGGGGCCGCGACGCTGTAAC 371 Query 354 AAATTTCAAACCCCTGTTTGATTTTCAA-ACA--GAGGAAATCGAGATCTCATTTTTGAA 410 |||||||||||| || |||| |||| | | || || || || ||| | || ||||| Sbjct 372 TAATTTCAAACCCTTGCTTGAGAATCAAGAAAGCGATGACATGGAAATCGCTTTCTTGAA 431 Query 411 CTCTCGTTCTAAGGTTGAGATAGTTGAAATGTTACGTAAACACACGTATAATGACGAACT 470 || | ||| |||| ||||| ||||| |||||||||||||| ||||||| || || | Sbjct 432 TTCACATTCCAAGGCGGAGATCGTTGACATGTTACGTAAACATACGTATATCGATGAGTT 491 Query 471 TCAACATGCCAAGA-A-AGTAT--A-TAACAACAATACTTTCGAGATGAATGGAAGGAGC 525 |||| ||||| | || | | | || | || || | ||| || ||||| Sbjct 492 GGAACAAAGCAAGAGATTGTTTGGATTTACTA-AAGACGGT-ATGAT-AA--AAAGGA-A 545 Query 526 ACATGCCATACTAATACTAATATCGCGACTTTTTCATTAGATACTAATGAAAAAGTCGCG 585 | ||| || |||| || | | || | ||| ||| ||| ||||| |||||| Sbjct 546 AGATGGACTAGTAAT--TAGT-T--CG-TTCTTT-GGTAG-TACAAATGATAAAGTC--A 595 Query 586 AAT--ATAGCTAGTGAACTGCTTTTTGAAAAAGTAGTTACACCGAGCGACGTTGGAAAAC 643 | | | ||| |||||| ||| ||||||||||| |||||||| || |||||||| |||| Sbjct 596 ATTGCAAAGCGCGTGAACAGCTATTTGAAAAAGTTGTTACACCAAGTGACGTTGGGAAAC 655 Query 644 TTAATAGGCTTGTTATTCCAAAACAACACGCAGAGAGATATTTCCCTTTGGTTGCCAAAG 703 ||||||||||||| || ||||||||||| || || | | | | || || || | Sbjct 656 TTAATAGGCTTGTGATACCAAAACAACATGCTGA-A-A-A----ACATT--TT-CC--A- 702 Query 704 TAAATA-AAAATGATAATACTTCTAAAGGGGTATTATTAAATTTCGAAGATATGAATGGG 762 | || |||||| |||| |||||||||||| || || |||||||||||| | ||||| Sbjct 703 T---TACAAAATGGAAATAATTCTAAAGGGGTTTTGTTGAATTTCGAAGATTTAAATGGT 759 Query 763 AAAATGTGGCGATTTCGATATTCGTATTGGAATAGTAGTCAAAGTTACGTATTAACTAAA 822 ||| | ||| ||||| | ||||||||||||||||||||||||||||| || |||| ||| Sbjct 760 AAAGTATGGAGATTTAGGTATTCGTATTGGAATAGTAGTCAAAGTTATGTTCTAACAAAA 819 Query 823 GGATGGAGTCGTTACGTTAAGGAAAAAAAGTTGAAGGCCGGAGATATAGTGAGTTTCAAA 882 ||||||||||||| ||||||||||||||| ||||||||||| ||||| |||||||| || Sbjct 820 GGATGGAGTCGTTTCGTTAAGGAAAAAAACTTGAAGGCCGGTGATATTGTGAGTTTTCAA 879 Query 883 CGAT 886 |||| Sbjct 880 CGAT 883 >Solyc08g013700.1 Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 Length=885 Score = 100 bits (54), Expect = 2e-20 Identities = 99/121 (82%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 737 TATTAAATTTCGAAGATATGAATGGGAAAATGTGGCGATTTCGATATTCGTATTGGAATA 796 |||| ||||| ||||||| |||||||| ||| | ||| | |||||||||||||||| Sbjct 281 TATTGAATTTTGAAGATAGTAATGGGAAGCCATGGAGGTTTAGGTATTCGTATTGGAATA 340 Query 797 GTAGTCAAAGTTACGTATTAACTAAAGGATGGAGTCGTTACGTTAAGGAAAA-AAAGTTG 855 ||||||| || || ||| | ||||||||||||||||||| |||||||| || ||| ||| Sbjct 341 GTAGTCAGAGCTATGTAATGACTAAAGGATGGAGTCGTTTTGTTAAGGAGAAGAAACTTG 400 Query 856 A 856 | Sbjct 401 A 401 >Solyc08g013690.1 Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 Length=975 Score = 100 bits (54), Expect = 2e-20 Identities = 99/121 (82%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 737 TATTAAATTTCGAAGATATGAATGGGAAAATGTGGCGATTTCGATATTCGTATTGGAATA 796 |||| ||||| ||||||| |||||||| ||| | ||| | |||||||||||||||| Sbjct 275 TATTGAATTTTGAAGATAGTAATGGGAAGCCATGGAGGTTTAGGTATTCGTATTGGAATA 334 Query 797 GTAGTCAAAGTTACGTATTAACTAAAGGATGGAGTCGTTACGTTAAGGAAAA-AAAGTTG 855 ||||||| || || ||| | ||||||||||||||||||| |||||||| || ||| ||| Sbjct 335 GTAGTCAGAGCTATGTAATGACTAAAGGATGGAGTCGTTTTGTTAAGGAGAAGAAACTTG 394 Query 856 A 856 | Sbjct 395 A 395 >Solyc09g010230.1 Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 Length=1038 Score = 89.8 bits (48), Expect = 4e-17 Identities = 101/126 (80%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 727 AAAGGG-GTATTATTAAATTTCGAAGATATGAAT-GGGAAAAT-GTGGCGATTTCGATAT 783 |||||| ||||| | | ||| |||||| || | ||||||| ||| ||||| ||||| Sbjct 318 AAAGGGATTATTACTGAGTTTTGAAGAT--GAGTCTGGAAAATCATGGAGATTTAGATAT 375 Query 784 TCGTATTGGAATAGTAGTCAAAGTTACGTATTAACTAAAGGATGGAGTCGTTACGTTAAG 843 || |||||||||||||| || || || ||||| |||||||| |||||||||| || ||| Sbjct 376 TCTTATTGGAATAGTAGCCAGAGCTATGTATTGACTAAAGGTTGGAGTCGTTTTGTCAAG 435 Query 844 GAAAAA 849 |||||| Sbjct 436 GAAAAA 441 >Solyc10g083210.1 Auxin response factor 1 (AHRD V1 *-*- D9HNS8_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 Length=927 Score = 75.0 bits (40), Expect = 1e-12 Identities = 98/126 (78%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 744 TTTCGAAGATATGAA-T-GGGAAAATGTGGCGATTTCGATATTCGTATTGGAATAGTAGT 801 ||| |||| ||||| | |||||| | ||| ||||| |||||||||||||||||||| Sbjct 276 TTTTGAAG--ATGAATTGGGGAAATTATGGAAGTTTCGTTATTCGTATTGGAATAGTAGC 333 Query 802 CAAAGTTACGTATTAACTAAAGGATGGAGTCGTTACGTTAAGGAAAAAAAGTTGAAGGCC 861 || || || || || |||||||||||||| || | ||| ||||| || || || | ||| Sbjct 334 CAGAGCTATGTGTTGACTAAAGGATGGAGCCGCTTCGTGAAGGAGAAGAAATTAGATGCC 393 Query 862 GGAGAT 867 || ||| Sbjct 394 GGTGAT 399 >Solyc03g083110.1 AP2 domain-containing transcription factor (AHRD V1 **** B9IMF3_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 Length=1008 Score = 71.3 bits (38), Expect = 2e-11 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 192 TTCAAAGTTCAAAGGTGTTGTCCCTCAACCAAATGGTCGATGGGGTGCACAAATCTACGA 251 |||||| ||||||||||| || ||| ||||||| ||||| || ||||| || | Sbjct 138 TTCAAAATTCAAAGGTGTAGTAGGGCAAAATAATGGTCATTGGGGAGCTCAAATATATGC 197 Query 252 AAAACATCAAAGGATTTGGCTTGGTACGTTCAATGGCGAAGAAGAAGCAGCAAGAGCTTA 311 ||| |||||||| |||||||||||||| || || ||| ||| ||||||| ||||| Sbjct 198 AAATCATCAAAGAATTTGGCTTGGTACTTTTAAAACTGAAACAGATGCAGCAATGGCTTA 257 Query 312 TGATA 316 ||||| Sbjct 258 TGATA 262 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45019220085 Database: Tomato Genome cDNA (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 41,981,568 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5