BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Capsicum annuum cv CM334 genome chromosomes (release 1.55) 12 sequences; 2,753,501,687 total letters Query= Untitled_sequence Length=900 Score E Sequences producing significant alignments: (Bits) Value Pepper1.55ch10 1657 0.0 Pepper1.55ch06 329 1e-87 Pepper1.55ch07 147 1e-32 >Pepper1.55ch10 Length=233593809 Score = 1657 bits (897), Expect = 0.0 Identities = 899/900 (99%), Gaps = 0/900 (0%) Strand=Plus/Plus Query 1 ATTTTAGGCCATCAAATAACATCAACAACATGATTTGATTCTGAATCGTAAAGGGGCTGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17759976 ATTTTAGGCCATCAAATAACATCAACAACATGATTTGATTCTGAATCGTAAAGGGGCTGT 17760035 Query 61 TGCTCATCGGACATACGCCGACAGTTGTTCCTGGTGGCGGAGAGCTGATACGGTGAACGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760036 TGCTCATCGGACATACGCCGACAGTTGTTCCTGGTGGCGGAGAGCTGATACGGTGAACGA 17760095 Query 121 TTGGTGCTAAGCCACTGATCCACGGTGAACAGTTGTTGGCTGCATCGTTTGTGGGCTCCT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760096 TTGGTGCTAAGCCACTGATCCACGGTGAACAGTTGTTGGCTGCATCGTTTGTGGGCTCCT 17760155 Query 181 GTAGAAGTGACTTCCACGTAGTTACAGAACCATTCATGGTTTCGGCCTGTACCATCAGAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760156 GTAGAAGTGACTTCCACGTAGTTACAGAACCATTCATGGTTTCGGCCTGTACCATCAGAA 17760215 Query 241 GCCAAGACCATTTTGCATATGGTCCCATTCAAACAGGGGCCCTTCCCACTGAACATATCC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760216 GCCAAGACCATTTTGCATATGGTCCCATTCAAACAGGGGCCCTTCCCACTGAACATATCC 17760275 Query 301 AAGTTTTCCCTTTCAAAGTAGTTGTAACCTTTGCCCATAAGCCCACCCCAAGTCACTAGG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760276 AAGTTTTCCCTTTCAAAGTAGTTGTAACCTTTGCCCATAAGCCCACCCCAAGTCACTAGG 17760335 Query 361 TTGTTGATTCTAATTCCATGACCATTCGCATCATACAGAGTTAAGGTGATTTTTGAGTCA 420 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 17760336 TTGTTGATTCTAATTCCATGACCACTCGCATCATACAGAGTTAAGGTGATTTTTGAGTCA 17760395 Query 421 GTTGCATCCTCGTCGAATGGCCCAGTTCGGACATAAGCTGTGTAGATACAATTATTTGTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760396 GTTGCATCCTCGTCGAATGGCCCAGTTCGGACATAAGCTGTGTAGATACAATTATTTGTT 17760455 Query 481 TCCTGCATTAGTTTCCCACCAAATCAGCAAGTGCAAAATGAAAAATATATAAAAATAAAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760456 TCCTGCATTAGTTTCCCACCAAATCAGCAAGTGCAAAATGAAAAATATATAAAAATAAAC 17760515 Query 541 AACGCAGACAGAATTTAGAACTAGCTAGTTAGCAGGTTTTCTTCTTTATATTATTAATTC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760516 AACGCAGACAGAATTTAGAACTAGCTAGTTAGCAGGTTTTCTTCTTTATATTATTAATTC 17760575 Query 601 ACCTATATATTCTTTATTTTTGTTCATACTTGTGTACATATATAATCGGAGATTAGTGAC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760576 ACCTATATATTCTTTATTTTTGTTCATACTTGTGTACATATATAATCGGAGATTAGTGAC 17760635 Query 661 TTACATCTCCCGAAATTGAAGAAATCGAGGCGGAGAGAAGGATGAACATGAGATGGAACC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760636 TTACATCTCCCGAAATTGAAGAAATCGAGGCGGAGAGAAGGATGAACATGAGATGGAACC 17760695 Query 721 AAAATTGGTTAACCTGAGCTACTCCCATGGCAGTGTTTTGTGCTTTCGTTCTGTTTCTTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760696 AAAATTGGTTAACCTGAGCTACTCCCATGGCAGTGTTTTGTGCTTTCGTTCTGTTTCTTT 17760755 Query 781 CTCTAGAATTAGAAATTAAGTGAGGATAAATGGCAAATATGATGTAGAGATGGTGGGAGT 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760756 CTCTAGAATTAGAAATTAAGTGAGGATAAATGGCAAATATGATGTAGAGATGGTGGGAGT 17760815 Query 841 AATAGAATGGTAATAATTTATTTATATTAACAATAGATCAAAGTTTAAAGGGGACGATAT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17760816 AATAGAATGGTAATAATTTATTTATATTAACAATAGATCAAAGTTTAAAGGGGACGATAT 17760875 Score = 294 bits (159), Expect = 5e-77 Identities = 404/523 (77%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 11 ATCAAATAACATCAACAACATGATTTGATTCTGAATCGTAAAGGGGCTGTTGCTCATCGG 70 || |||| ||||||||| || || ||||| ||||| |||| |||||||| ||| || Sbjct 17699694 ATTAAATTACATCAACAGCAGTATAAGATTCAGAATCATAAATGGGCTGTTCTTCACTGG 17699753 Query 71 ACATACGC-CG--ACAGTTGTTCCTGGTGGCGGAGAGCTGATACGGTGAACGATTGGTGC 127 | | || | ||||||||||||| |||| | |||| |||||| ||| || |||| Sbjct 17699754 ATTTGGGCTTGTTACAGTTGTTCCTGATGGCCGTCAGCTTATACGGCGAAACATCAGTGC 17699813 Query 128 TAAGCCACTGATCCACGGTGAACAGTTGTTGGCTGCATCGTTTGTGGGCTCCTGTAGAAG 187 |||||||| |||||| |||||| || ||| ||||| ||||||||||||| ||| | Sbjct 17699814 CGAGCCACTGCTCCACGTTGAACAACTGCTGGATGCATTGTTTGTGGGCTCCCGTAACTG 17699873 Query 188 TGACTTCCACGTAGTTACAGAACCATTCATGGTTTCGGCCTGTACCATCAGAAGCCAAGA 247 |||||||||||||||||||| ||||| |||||| | ||||||||||||| |||| |||| Sbjct 17699874 TGACTTCCACGTAGTTACAGTACCATCCATGGTGTGGGCCTGTACCATCGGAAGTCAAGT 17699933 Query 248 CCATTTTGCATATGGTCCCATTCAAACAGGGGCCCTTCCCACTGAACATATCCAAGTTTT 307 ||||||||| || | |||| |||||| || || ||||| || ||||||||||| Sbjct 17699934 TCATTTTGCAGATTGGCCCAGCCAAACATGGACCACGACCACTAAAGATATCCAAGTTAC 17699993 Query 308 CCCTTTCAAAGTAGTTGTAACCTTTGCCCATAAGCCCACCCCAAGTCACTAGGTTGTTGA 367 ||||||| ||||||||||||||| ||||||||||||||||| | | ||| ||| |||| Sbjct 17699994 CCCTTTCGAAGTAGTTGTAACCTGGACCCATAAGCCCACCCCAGGCCTCTATGTTCTTGA 17700053 Query 368 TTCTAATTCCATGACCATTCGCATCATACAGAGTTAAGGTGATTTTTGAGTCAGTTGCAT 427 |||||| ||| | ||||| ||||||||| ||||| ||| | || |||||||| ||| | | Sbjct 17700054 TTCTAAGTCCGTAACCATCCGCATCATAGAGAGTCAAGCTAATGTTTGAGTCGGTTCC-T 17700112 Query 428 CCTCGTC-GAATGGCCCAGTTCGGACATAAGCTGTGTAGATACAATTATTTGTTTCCTGC 486 || | || || ||||| || | ||||||||||| | ||||| || | | ||||| Sbjct 17700113 GCTTTTATGATTGAGCCAGTGCGAATGTAAGCTGTGTACACACAATCATCT-T--CCTGC 17700169 Query 487 ATTAGTTTCCCACCAAATCAGCAAGTGCAA--AATGAAAAATA 527 || ||||||| || ||||||| | ||| || |||||||| Sbjct 17700170 AT---TTTCCCATTAATTCAGCAATTCCAAGTAAAGAAAAATA 17700209 Score = 226 bits (122), Expect = 2e-56 Identities = 390/521 (75%), Gaps = 11/521 (2%) Strand=Plus/Minus Query 19 ACATCAACAACATGATTTGATTCTGAATCGTAAAGGGGCTGTTGCTCATCGGACATACGC 78 |||||||||||||||| || | | ||||||| || | ||||||||| || | ||||| Sbjct 17762272 ACATCAACAACATGATAGGACTGAGGATCGTAAGTGGACAGTTGCTCATTGGGCTTACGC 17762213 Query 79 CGACAGTTGTTCCTGGTGGCGGAGAGCTGATACGGTGAACGATTGGTGCTAAGCCACTGA 138 | |||||||||| | |||| | ||| || || | | | | ||||| | Sbjct 17762212 CCACAGTTGTTCTTAATGGCCGTCAGCCCATCTGGAAATTCACCAGCACCCAGCCATTTC 17762153 Query 139 TCCACGGTGAACAGTTGTTGGCTGCATCGTTTGTGGGCTCCTGTAGAAGTGACTTCCACG 198 ||||| ||||||| || ||| ||||||||||||| ||||||| || || ||||| ||| Sbjct 17762152 TCCACTGTGAACAACTGCTGGTTGCATCGTTTGTGTTCTCCTGTGGAGGTAACTTCTACG 17762093 Query 199 TAGTTACAGAACCATTCATGGTTTCGGCCTGTACCATCAGAAGCCAAGACCATTTTGCAT 258 || |||||| ||||| || | | |||||||||||||||||| |||| ||||||||| Sbjct 17762092 TAATTACAGTACCATCCAGCATGTTGGCCTGTACCATCAGAAGTCAAGTTCATTTTGCAA 17762033 Query 259 ATGGTCCCATTCAAACAGGGGCCCTTCCCACTGAACATATCCAAGTTTTCC-CTTTCAAA 317 | | |||||||||||| || || || | |||| |||||| |||||| |||||| Sbjct 17762032 ACCGGCCCATTCAAACATGGACCACGACCGGTAAACAAATCCAA-TTTTCCAAATTCAAA 17761974 Query 318 GTAGTTGTAACCTTTGCCCATAAGCCCACCCCAAGTCACTAGGTTGTTGATTCTAATTCC 377 ||||| |||||| ||||||||||||||||||| | | ||||| | |||||||||| ||| Sbjct 17761973 GTAGTCGTAACCACTGCCCATAAGCCCACCCCACGCCTCTAGGCTCTTGATTCTAAGTCC 17761914 Query 378 ATGACCATTCGCATCATACAGAGTTAAGGTGATTTTTGAGTCAGTTGCATCCTCGTCGAA 437 || |||| ||||| || ||| | || || ||||||||||||||| || || | || Sbjct 17761913 ATATCCATCGGCATCGTAAAGACTCAAAGTAATTTTTGAGTCAGTTCCAGCCCCAAAAAA 17761854 Query 438 TGGCCCAGTTCGGACATAAGCTGTGTAGATACAATTATTTGTTTCCTGCATTAG-TTTCC 496 | ||||||| | || ||| ||| ||| | |||||| | ||| ||||||||| ||||| Sbjct 17761853 TTGCCCAGTCTGAACGTAAACTGAGTATACACAATT-TA-GTT-CCTGCATTAATTTTCC 17761797 Query 497 CACCAAATCAGCAAGTG-CAAAATGAAAAATATATAAAAAT 536 || | | ||| ||| || ||||| | ||| ||| |||||| Sbjct 17761796 CATCGATTCATCAATTGTCAAAA--ATAAA-ATA-AAAAAT 17761760 >Pepper1.55ch06 Length=236913278 Score = 329 bits (178), Expect = 1e-87 Identities = 198/208 (95%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 6 AGGCCATCAAATAACATCAACAACATGATTTGATTCTGAATCGTAAAGGGGCTGTTGCTC 65 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 17819253 AGGCCATCAAATAACATCAACAACATGATTTGATTTCGAATCGTAAAGGGGCTGTTGCTC 17819194 Query 66 ATCGGACATACGCCGACAGTTGTTCCTGGTGGCGGAGAGCTGATACGGTGAACGATTGGT 125 |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| ||| Sbjct 17819193 ATCGGACATACGCCTACAGTTGTTCATGGTGGCCGAGAGCTGATACGGTGAACGATCGGT 17819134 Query 126 GCTAAGCCACTGATCCACGGTGAACAGTTGTTGGCTGCATCGTTTGTGGGCTCCTGTAGA 185 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 17819133 GCTAAGCCACTGATCCACATTGAACAGTTGTTGGCTGCATCGTTTGTGGGCTCCTGTAGA 17819074 Query 186 AGTGACTTCCACGTAGTTACAGAACCAT 213 |||||||||||| |||||| |||||||| Sbjct 17819073 AGTGACTTCCACATAGTTATAGAACCAT 17819046 >Pepper1.55ch07 Length=231911496 Score = 147 bits (79), Expect = 1e-32 Identities = 248/331 (75%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 103 AGCTGATACGGTGAACGATTGGT-GCTAAGCCACTGATCCACGGTGAACAGT-TGTTGGC 160 |||| ||| |||||| ||| ||| || || |||||| || || ||| | | |||||| Sbjct 227599593 AGCTCATAAGGTGAATGATCGGTTGC-AATCCACTGCTCAACTTCGAA-ATTCTGTTGGT 227599650 Query 161 TGCATCGTTTGTGGGCTCCTGTAGAAGTGACTTCCACGTAGTTACAGAACCATTCATGGT 220 | ||| | ||| |||| ||| |||||| |||||||||||| | ||||| |||| Sbjct 227599651 TACATTCTAAATGGACTCCAGTAACAGTGACCTCCACGTAGTTAGGGTACCATCCATGTC 227599710 Query 221 TTCGGCCTGTACCATCAGAAGCCAAGACCATTTTGCATATGGTCCCATTCAAACAGGGGC 280 | ||||||| ||||| |||| |||| ||| ||||| | | |||| || || |||| Sbjct 227599711 CTGGGCCTGTTCCATCTGAAGTCAAGTTCATCTTGCAGACCGGCCCAGATAAGCATGGGC 227599770 Query 281 C-CTTCCCACTGAACATATCCAAGTTTTCCCTTTCAAAGTAGTTGTAACCTTTGCCCATA 339 | | | ||||| || || ||||||||| | || ||| | ||||||||||| ||||||| Sbjct 227599771 CTCGT-CCACTAAAGATGTCCAAGTTTCCTCTCTCATAATAGTTGTAACCCGGGCCCATA 227599829 Query 340 AGCCCACCCCAAGTCACTAGGTTGTTGATTCTAATTCCATGACCATTCGCATCATACAGA 399 || |||||||||| | | ||||||||||||||||| || | || | ||||| |||||| Sbjct 227599830 AGTCCACCCCAAGCCTCCAGGTTGTTGATTCTAATACCGTATCCCTCTGCATCGTACAGA 227599889 Query 400 GTTAAGGTGATTTTTGAGTCAGTTGCATCCT 430 |||||| |||| |||| || ||| || ||| Sbjct 227599890 GTTAAGCTGATAATTGAATCGGTTCCAGCCT 227599920 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2395546154490 Database: Capsicum annuum cv CM334 genome chromosomes (release 1.55) Posted date: Mar 21, 2024 3:36 PM Number of letters in database: 2,753,501,687 Number of sequences in database: 12 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5