BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome cDNA (ITAG release 4.0)
           34,075 sequences; 44,419,890 total letters



Query= Untitled_sequence

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc06g005070.3.1                                                    366     3e-101


>Solyc06g005070.3.1 
Length=939

 Score = 366 bits (198),  Expect = 3e-101
 Identities = 200/201 (99%), Gaps = 0/201 (0%)
 Strand=Plus/Plus

Query  1    ATCCTTAGGATGCTGCCGATTTGGGCTGCAGGGATGTTACATTTTGCTTCACATTCACAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  106  ATCCTTAGGATGCTGCCGATTTGGGCTGCAGGGATGTTACATTTTGCTTCACATTCACAT  165

Query  61   GTAAGCAGCTTTACAATCCAACAGGCGCGAAGTATGGATCATCATCTATCCCACAGCTTC  120
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  166  GTAAGCAGCTTTACAATCCAACAGGCGCGAAGTATGGATCGTCATCTATCCCACAGCTTC  225

Query  121  CAAATACCTCCAGCCAGCATGTCTATTTTTAGTGTCCTAACGGTGCTCATTGGCTTAGCG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  226  CAAATACCTCCAGCCAGCATGTCTATTTTTAGTGTCCTAACGGTGCTCATTGGCTTAGCG  285

Query  181  CTTTATGAGCGCTTCTTTGTT  201
            |||||||||||||||||||||
Sbjct  286  CTTTATGAGCGCTTCTTTGTT  306



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 7767237370


  Database: Tomato Genome cDNA (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:18 PM
  Number of letters in database: 44,419,890
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5