BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome CDS (ITAG release 4.0)
           34,075 sequences; 34,993,605 total letters



Query= Untitled_sequence

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc08g077980.4.1                                                    235     3e-61


>Solyc08g077980.4.1 
Length=543

 Score = 235 bits (127),  Expect = 3e-61
 Identities = 281/357 (79%), Gaps = 4/357 (1%)
 Strand=Plus/Plus

Query  388  TTTGTCTGTTTCTCAGCAGCAGCAATGTTAGCAAGACGCAGGGAGTATCTCTACCTTGGA  447
            ||||  || |||||||| || || ||||| ||||| |||||||||||  | ||||| || 
Sbjct  187  TTTGGTTGCTTCTCAGCTGCTGCCATGTTGGCAAGGCGCAGGGAGTACTTGTACCTCGGG  246

Query  448  GGACTGCTTTCATCTGGCTTGTCTATGCTAATGTGGCTCCAGTTTGCCTCTTCAATCTTT  507
            || || |||||||||||| | ||  | ||  | ||| | || ||||| || || || |||
Sbjct  247  GGCCTTCTTTCATCTGGCGTCTCCCTTCTCTTCTGGTTGCACTTTGCATCCTCCATTTTT  306

Query  508  GGTGGCTCTGCAT--CTATCTTTAAGTTTGAGTTGTACTTTGGACTTTTGATCTTTGTGG  565
            ||||| | | |||  || | || |||||||||||||| |||||||| ||| | |||||||
Sbjct  307  GGTGG-T-TCCATGGCTGTTTTCAAGTTTGAGTTGTATTTTGGACTCTTGGTGTTTGTGG  364

Query  566  GATACATGGTGGTGGACACACAAGAGATTATAGAAAAGGCACACCTCGGTGACATGGACT  625
            | ||||| ||  | ||||| ||||| ||||| || ||||| ||| | ||||| ||||| |
Sbjct  365  GCTACATCGTCTTTGACACCCAAGAAATTATTGAGAAGGCTCACTTGGGTGATATGGATT  424

Query  626  ATGTAAAACATTCGTTGACCCTTTTCACTGACTTTGTAGCTGTGTTTGTTCGGATTCTCA  685
            | || || ||| | |||||||||||||| || ||||| ||||| ||||| |||||||| |
Sbjct  425  ACGTTAAGCATGCATTGACCCTTTTCACAGATTTTGTCGCTGTTTTTGTGCGGATTCTGA  484

Query  686  TCATAATGTTGAAGAACTCAGCAGATAAAGAAGAGAAGAAGAAGAAAAGGAGAAACT  742
            |||| ||||| |||||  || | || || ||||||||||||||||| ||||||||||
Sbjct  485  TCATCATGTTAAAGAATGCATCTGAGAAGGAAGAGAAGAAGAAGAAGAGGAGAAACT  541



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 24547903870


  Database: Tomato Genome CDS (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 34,993,605
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5