BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome cDNA (ITAG release 2.40)
           34,725 sequences; 41,981,568 total letters



Query= Untitled_sequence

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc04g054750.1Unknown Protein (AHRD V1)                             161     2e-39
Solyc10g084830.1Amino acid transporter (AHRD V1 ***- B9IFW4_POPTR...  91.6    3e-18


>Solyc04g054750.1 Unknown Protein (AHRD V1)
Length=96

 Score = 161 bits (87),  Expect = 2e-39
 Identities = 87/87 (100%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  1   ATGAAAGAAGAGACAATCTATAAGGCCACAGAGTCGTTTGATGAGGCAAAGAAGCTCAAT  60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1   ATGAAAGAAGAGACAATCTATAAGGCCACAGAGTCGTTTGATGAGGCAAAGAAGCTCAAT  60

Query  61  CAAGGTGGATTTGACACAATTTATGAG  87
           |||||||||||||||||||||||||||
Sbjct  61  CAAGGTGGATTTGACACAATTTATGAG  87


>Solyc10g084830.1 Amino acid transporter (AHRD V1 ***- B9IFW4_POPTR); contains 
Interpro domain(s)  IPR013057  Amino acid transporter, transmembrane 

Length=1590

 Score = 91.6 bits (49),  Expect = 3e-18
 Identities = 134/173 (77%), Gaps = 14/173 (8%)
 Strand=Plus/Plus

Query  93   CCTCTTGAATAGAGTATTTGATTATGATGAGTGGCAACCTT------C---T--CAAACA  141
            ||||||| |||||||||||||||||||||||||  ||||||      |   |  | || |
Sbjct  698  CCTCTTGCATAGAGTATTTGATTATGATGAGTGATAACCTTGGCGCCCTATTCCCGAATA  757

Query  142  GTCACAATGGAGTTTGTTGGAATTTATCTTGATTCTTATCAAATGTATGTGATCATTT-T  200
            ||||| |||||||||| ||||||| ||||  ||||||||||||| | ||  || |||| |
Sbjct  758  GTCAC-ATGGAGTTTGCTGGAATTCATCTGAATTCTTATCAAATATGTGCTATTATTTCT  816

Query  201  AGCCTTTGTCTTACTTTCAATGGTTTGGCTTAAAAATCTCGATTTACTATCTA  253
            | ||||  || ||||| |||  |||||||||| |||||||  ||| || ||||
Sbjct  817  ACCCTTA-TCATACTTCCAACCGTTTGGCTTAGAAATCTCCGTTTGCTGTCTA  868



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 9752115816


  Database: Tomato Genome cDNA (ITAG release 2.40)
    Posted date:  Mar 21, 2024  3:33 PM
  Number of letters in database: 41,981,568
  Number of sequences in database:  34,725



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5