BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Tomato Genome protein sequences (ITAG release 2.40) 34,725 sequences; 11,955,943 total letters Query= Untitled_sequence Length=1703 Score E Sequences producing significant alignments: (Bits) Value Solyc01g097320.2Mediator of RNA polymerase II transcription subun... 2150 0.0 >Solyc01g097320.2 Mediator of RNA polymerase II transcription subunit 14 (Predicted) IPR013947 Mediator complex, subunit Med14 Length=1791 Score = 2150 bits (5572), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1160/1810 (64%), Positives = 1352/1810 (75%), Gaps = 147/1810 (8%) Query 1 MAELGQQTVDFSALVGRAAEESFLSFKELVDKSKSTELSDTEKKVSLLKYVAKTQQRMLR 60 MAELGQQTVDFSALV RAAEES+++ KELV+K KS+ LSD+EKK+ +LKYV KTQQRMLR Sbjct 1 MAELGQQTVDFSALVSRAAEESYVTLKELVEKCKSSNLSDSEKKIGILKYVVKTQQRMLR 60 Query 61 LNALAKWCKQVPLINYFQDLGSTLSAHDICFTQAADSLFFMHEGLQQARAPVYDVPSAVE 120 LN L+KWC+QVPLI Y Q L STLS+HD CFTQAADSLFFMHEGLQQARAP+YDVPSAVE Sbjct 61 LNVLSKWCQQVPLIQYSQQLASTLSSHDTCFTQAADSLFFMHEGLQQARAPIYDVPSAVE 120 Query 121 ILLTGSYQRLPKCLDDVGMQSSLDEHQQKPALRKLEVLVRSKLLEITLPKEITEVKISKG 180 +LLTGSY RLPKC++DVG+QS+L++ QQKPAL+KL+ LVRSKLLE++LPK+ITEVK+S G Sbjct 121 VLLTGSYDRLPKCIEDVGLQSTLNDDQQKPALKKLDTLVRSKLLEVSLPKDITEVKVSDG 180 Query 181 TVTLSVDGEFKVLVTLGYRGHLSMWRILHLDLLVGERSGPIKLEVTRRHILGDDLERRMS 240 TV L V+GEFKVLVTLGYRGHLSMWRILH++LLVGERSGP+KL+ RRH LGDDLERRM+ Sbjct 181 TVLLRVEGEFKVLVTLGYRGHLSMWRILHMELLVGERSGPMKLDDFRRHALGDDLERRMA 240 Query 241 VAENPFTILYAVLHELCVAIVMDTVIRQVRALLQGRWKDAIRFDLISDT--------GTT 292 A++PF LY++LHELCVA+VMDTVIRQV+ L QGRWKDAIRF+LI+D G+T Sbjct 241 AADHPFMTLYSILHELCVALVMDTVIRQVQTLRQGRWKDAIRFELITDVSTGQAGSAGST 300 Query 293 PANQEGEADSVSLRTPGMKLFYWSDSDKNSG-------PFIKIEPGSDLQIKCSHSTFVI 345 +Q+GE+DS SLRTPG+K+ YW D DKNSG PFIKIEPG DL+IKC HSTFVI Sbjct 301 QTSQDGESDSASLRTPGLKILYWLDLDKNSGTSEIGTCPFIKIEPGPDLRIKCLHSTFVI 360 Query 346 DPLTGKEAEFSLDQSCIDVEKLLLKAICCNRYTRLLEIQKELLRNTRICRTPSDVILQAL 405 DPLTGKEAEFSLDQSCID+EKLLL+ ICCNRYTRLLEI KEL +N++ICR PSD+ LQ Sbjct 361 DPLTGKEAEFSLDQSCIDIEKLLLRVICCNRYTRLLEILKELEKNSQICRVPSDIQLQCH 420 Query 406 LDE---PGIEGDNMVDSKERVEPEVLRVRAYGSSFFTLGINIRTGRFLLQSSKSILTSSI 462 ++E + DN DS+E EVLRVRA+GSSFFTL INIR GRF+L SSK++++SS+ Sbjct 421 VEEMLGDSRKKDNKFDSREYQGQEVLRVRAFGSSFFTLAINIRNGRFILHSSKNVISSSV 480 Query 463 LEEFEDALNQGSISAVDAFINLRSKSILHFFAAIGKFLGLEVYEHGFGINKVPKSLLDGS 522 + E E+ALNQGS+SA +AFI+LRSKSILH FA IG+FLGLEV+EHG KVPKS+ G+ Sbjct 481 VVECEEALNQGSMSAAEAFISLRSKSILHLFACIGRFLGLEVFEHGSAAVKVPKSISSGT 540 Query 523 SILTLGFPDCESSHLLLMELEKDFTPLFKLLETQMDGSGKPQSFNDPSNILRAKKIDIGQ 582 ++L +GFP+C SS+ LLMEL+KDF P+FKLLE++ D K QS D SN++R + ID+G+ Sbjct 541 NLLLMGFPECGSSYFLLMELDKDFKPVFKLLESRSDSPAKAQSLADLSNVVRVETIDVGR 600 Query 583 IRILEDDLNLITSDVVKFVSSFSDAEGINQASGHRQPGLVD---EALTEMSGSQLSFSSV 639 ++I ED+LNL + K +S G +Q S + L D E SG Q +F S+ Sbjct 601 MQICEDELNLSLLNSKKLLSVLRSDGGSHQTSENSL--LADFSLEGSIVASGVQSTFLSI 658 Query 640 VDGVFGLQKVTSALMSIDGHGLVPKNLSAVTGHGKAPMLTSY------------------ 681 VD VF L+K S++ S G + P A + +Y Sbjct 659 VDEVFELEK-GSSVPSFSGQ-IPPSTFGASPASHFGTGVANYQSLKVGTLSPKWDRGVGN 716 Query 682 HSDSLYNRQGPLQSSSYNMLSSPPGKGSAMKKIAISNSDQELSLILSP------------ 729 +S+S+Y +G +QS S L++ KK+ S S+Q+L+ + SP Sbjct 717 YSNSMY--KGVIQSGSVGSLAAT----QTGKKLTASKSEQDLTSLRSPHSAGVGSYTSLD 770 Query 730 ----SLSTGN--------------------------GVSESGSRLVTESSLSPLPLSQTA 759 ++ST G G R +SL P SQT Sbjct 771 EDQLTVSTNRSARLLSPPHRVSASSGKASGSRNSAVGTLPGGFRTADSNSLVLSPGSQTI 830 Query 760 DLATSSAGPLLRKDQK--------PRKRSASDLLRLIPSLQVVEGVASPNKRRKTSELVQ 811 D AT ++ +Q PRKR+ SDLL +PSLQ ++ KRRK E Sbjct 831 DSATC-----IKSEQDAASGYNILPRKRTLSDLLDSLPSLQSMQSNEGSYKRRKLVESAG 885 Query 812 SELVKSWSPASQTLSTAVSTSTKTIGCSYGNLIAEANKGNAPSSVFVYALLHVVRHSSLS 871 + L KS + T+ S KT SYG+LIAEANKGNAPSS++V +LLHVVRH SL Sbjct 886 THLPKS------MMLTSSDISGKTEEYSYGSLIAEANKGNAPSSIYVSSLLHVVRHCSLC 939 Query 872 IKHAKLTSQMEALDIQYVEEMGLRDAFSDIWFRLPFAQNDSWQHICLQLGRPGSMCWDVK 931 IKHA+LTSQMEALDI YVEE+GLR A S++WFR+PFA++D+WQHICL+LGRPGSM WDVK Sbjct 940 IKHARLTSQMEALDIPYVEEVGLRSASSNLWFRVPFARDDTWQHICLRLGRPGSMYWDVK 999 Query 932 INDQHFRDLWELQKGSKTTPWGSGVHIANSSDVDSHIRYDPEGVVLSYQSVEADSIKKLV 991 INDQHF+DLWELQKGS +TPW SG+ IAN+SD DSHIRYD EGVVLSY SV+ADSIKKLV Sbjct 1000 INDQHFQDLWELQKGSNSTPWDSGIRIANTSDADSHIRYDCEGVVLSYYSVDADSIKKLV 1059 Query 992 ADIQRLSNARMFSLGMRKLLGIKPDEKTEECSANSTMKGSTGGKGSGEPVDRW-----RA 1046 ADIQRLSNAR F+LGMRKLLG + DEK EE +ANS K KG+ + DR + Sbjct 1060 ADIQRLSNARTFALGMRKLLGARADEKFEENNANSESKAPAALKGTTDATDRISEQMRKQ 1119 Query 1047 FKIEAVGLTSLWFSFGSGVLARFVVEWESGKDGCTMHVSPDQLWPHTKFLEDFINGAEVE 1106 F+IEAVGL SLWFSFGSGVLARFVVEWESGK+GCTMHVSPDQLWPHTKFLEDFINGAEV Sbjct 1120 FRIEAVGLMSLWFSFGSGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFINGAEVA 1179 Query 1107 SLLDCIRLTAGPLHALAAATRPARASTATGMPVVPATASS--RQSNQIQQTQGIIAPS-T 1163 SLLDCIRLTAGPLHALAAATRPARA+ +G+P V A SS +Q+ + + S Sbjct 1180 SLLDCIRLTAGPLHALAAATRPARAAPVSGVPGVTAPISSVAKQTGYVPSLPSNVNSSIN 1239 Query 1164 LAAPNATGQSASATSGNTVASSAPSPLGGGFHGVAMLAAAGRSGPGIVPSSLLPIDVSVV 1223 AP A SA+ G A S PS A AAAGR GPGIVPSSLLPIDVSVV Sbjct 1240 QPAPGAGVNPVSASVGTLGAHSHPSAA----MLAAAAAAAGRGGPGIVPSSLLPIDVSVV 1295 Query 1224 LRGPYWIRIIYRKRFAVDMRCFAGDQVWLQPATPPKGGASIGGSLPCPQFRPFIMEHVAQ 1283 LRGPYWIRIIYRK+FAVDMRCFAGDQVWLQPATPPKGG +GGSLPCPQFRPFIMEHVAQ Sbjct 1296 LRGPYWIRIIYRKKFAVDMRCFAGDQVWLQPATPPKGGPEVGGSLPCPQFRPFIMEHVAQ 1355 Query 1284 ELNGLEPNLTGSQ---GATNPNSGN-----PTVNGVNRVNFS-------PSSARAAMNRV 1328 ELNG++ N TGSQ G N NS N P N NR N S P++A NR Sbjct 1356 ELNGIDSNFTGSQQAVGVPNSNSLNAGSQLPAAN-TNRTNLSNSTGLARPANAVTGFNRT 1414 Query 1329 AS---VASGSLVVSSGLPVRRTPGTAVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKK 1385 A+ AS V++G+P+RR PGT VPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKK Sbjct 1415 ANGLPAASNLAGVNAGMPLRRAPGTGVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKK 1474 Query 1386 VLRGILKYLGVLWLFAQLPDLLREILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSV 1445 VLRGILKYLGVLWLFAQLPDLL+EILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSV Sbjct 1475 VLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSV 1534 Query 1446 HRVQLLLQVLSVRRFHHQAQQNGSS-AAAQEELTQSEIGEICDYFSRRVASEPYDASRVA 1504 HRVQLLLQV+SV+RFH QQ + +AQEELTQSEIGEICDYFSRRVASEPYDASRVA Sbjct 1535 HRVQLLLQVISVKRFHQSQQQQQQNPGSAQEELTQSEIGEICDYFSRRVASEPYDASRVA 1594 Query 1505 SFITLLTLPISVLREFLKLIAWKKGLSQSQQAGEIAPAQRPRIELCLENHSGTDLD---- 1560 SFITLLTLPISVLREFLKLIAWKKGLSQ Q G++ P Q+ RIELCLENH+G +D Sbjct 1595 SFITLLTLPISVLREFLKLIAWKKGLSQV-QGGDMVPTQKSRIELCLENHAGYSIDGSSE 1653 Query 1561 NNCAAKSNIHYDRPHNTVDFALTVVLDPVHIPHINAAGGAAWLPYCVSVRLRYTFGENPS 1620 N A+KSNIHYDR HN+VDFALTVVLD HIPHINAAGGAAWLPYCVSVRLRY FGENP+ Sbjct 1654 NTSASKSNIHYDRAHNSVDFALTVVLDHAHIPHINAAGGAAWLPYCVSVRLRYAFGENPN 1713 Query 1621 VTFLGMEGSHGGRACWQRVDDWEKCKQRVSRTVEVNGSAAGDLTQGKLKLVADSVQRTLH 1680 V FLGMEGSHGGRACW RVDDWE+CKQRV+RTVEVNG++AGD QG+L++VADSVQRTLH Sbjct 1714 VLFLGMEGSHGGRACWLRVDDWERCKQRVARTVEVNGNSAGDANQGRLRVVADSVQRTLH 1773 Query 1681 LCLQGLREGG 1690 LQGLR+GG Sbjct 1774 AYLQGLRDGG 1783 Lambda K H a alpha 0.317 0.133 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12834188113 Database: Tomato Genome protein sequences (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 11,955,943 Number of sequences in database: 34,725 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40