BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Nitab v4.5 cDNA Edwards2017
           69,500 sequences; 76,611,276 total letters



Query= Untitled_sequence

Length=1172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Nitab4.5_0004950g0020.1Amine oxidase                                  401     9e-111
Nitab4.5_0006338g0050.1Amine oxidase, Phytoene desaturase             268     1e-70 


>Nitab4.5_0004950g0020.1 Amine oxidase
Length=1951

 Score = 401 bits (217),  Expect = 9e-111
 Identities = 217/217 (100%), Gaps = 0/217 (0%)
 Strand=Plus/Plus

Query  939   GGAATTTTGGCCATACTAAAGAACAACGAAATGCTTACGTGGCCCGAAAAAGTCAAATTT  998
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  675   GGAATTTTGGCCATACTAAAGAACAACGAAATGCTTACGTGGCCCGAAAAAGTCAAATTT  734

Query  999   GCTATTGGACTCTTGCCAGCAATGCTTGGAGGGCAATCTTATGTTGAAGCTCAAGACGGT  1058
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735   GCTATTGGACTCTTGCCAGCAATGCTTGGAGGGCAATCTTATGTTGAAGCTCAAGACGGT  794

Query  1059  TTAAGTGTTAAGGACTGGATGAGAAAGCAAGTGCGTGATCGTTTTATCTTACTCTTTAAA  1118
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  795   TTAAGTGTTAAGGACTGGATGAGAAAGCAAGTGCGTGATCGTTTTATCTTACTCTTTAAA  854

Query  1119  GTTCATAACCTTGAGGACATAGTTGACTTGCATGTTG  1155
             |||||||||||||||||||||||||||||||||||||
Sbjct  855   GTTCATAACCTTGAGGACATAGTTGACTTGCATGTTG  891


 Score = 291 bits (157),  Expect = 2e-77
 Identities = 157/157 (100%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  492  TTGGGGCTTACCCAAATATGCAGAACTTGTTTGGAGAACTAGGGATAAACGATCGGTTGC  551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  520  TTGGGGCTTACCCAAATATGCAGAACTTGTTTGGAGAACTAGGGATAAACGATCGGTTGC  579

Query  552  AGTGGAAGGAACATTCAATGATATTTGCGATGCCTAACAAGCCAGGGGAGTTCAGCCGCT  611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  580  AGTGGAAGGAACATTCAATGATATTTGCGATGCCTAACAAGCCAGGGGAGTTCAGCCGCT  639

Query  612  TTGATTTTCCTGAAGCTCTTCCTGCGCCATTAAATGG  648
            |||||||||||||||||||||||||||||||||||||
Sbjct  640  TTGATTTTCCTGAAGCTCTTCCTGCGCCATTAAATGG  676


 Score = 111 bits (60),  Expect = 2e-23
 Identities = 60/60 (100%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  223  AGGTAGCTGCATGGAAAGATGATGATGGAGATTGGTATGAGACTGGGTTGCACATATTCT  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  460  AGGTAGCTGCATGGAAAGATGATGATGGAGATTGGTATGAGACTGGGTTGCACATATTCT  519


>Nitab4.5_0006338g0050.1 Amine oxidase, Phytoene desaturase
Length=1885

 Score = 268 bits (145),  Expect = 1e-70
 Identities = 153/157 (97%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  492  TTGGGGCTTACCCAAATATGCAGAACTTGTTTGGAGAACTAGGGATAAACGATCGGTTGC  551
            |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct  520  TTGGGGCTTACCCAAATATGCAGAACCTGTTTGGAGAACTAGGGATTAACGATCGATTGC  579

Query  552  AGTGGAAGGAACATTCAATGATATTTGCGATGCCTAACAAGCCAGGGGAGTTCAGCCGCT  611
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  580  AGTGGAAGGAACATTCAATGATATTTGCGATGCCTAACAAGCCAGGGGAATTCAGCCGCT  639

Query  612  TTGATTTTCCTGAAGCTCTTCCTGCGCCATTAAATGG  648
            |||||||||||||||||||||||||||||||||||||
Sbjct  640  TTGATTTTCCTGAAGCTCTTCCTGCGCCATTAAATGG  676


 Score = 268 bits (145),  Expect = 1e-70
 Identities = 149/151 (99%), Gaps = 0/151 (0%)
 Strand=Plus/Plus

Query  939   GGAATTTTGGCCATACTAAAGAACAACGAAATGCTTACGTGGCCCGAAAAAGTCAAATTT  998
             |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  675   GGAATTTTGGCCATACTAAAGAACAATGAAATGCTTACATGGCCCGAAAAAGTCAAATTT  734

Query  999   GCTATTGGACTCTTGCCAGCAATGCTTGGAGGGCAATCTTATGTTGAAGCTCAAGACGGT  1058
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735   GCTATTGGACTCTTGCCAGCAATGCTTGGAGGGCAATCTTATGTTGAAGCTCAAGACGGT  794

Query  1059  TTAAGTGTTAAGGACTGGATGAGAAAGCAAG  1089
             |||||||||||||||||||||||||||||||
Sbjct  795   TTAAGTGTTAAGGACTGGATGAGAAAGCAAG  825


 Score = 106 bits (57),  Expect = 8e-22
 Identities = 59/60 (98%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  223  AGGTAGCTGCATGGAAAGATGATGATGGAGATTGGTATGAGACTGGGTTGCACATATTCT  282
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  460  AGGTAGCTGCATGGAAAGATGATGATGGAGATTGGTATGAGACTGGGTTGCATATATTCT  519



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 85725700296


  Database: Nitab v4.5 cDNA Edwards2017
    Posted date:  Mar 21, 2024  4:12 PM
  Number of letters in database: 76,611,276
  Number of sequences in database:  69,500



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5