BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome CDS (ITAG release 4.0)
           34,075 sequences; 34,993,605 total letters



Query= Untitled_sequence

Length=1364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc05g008050.3.1                                                    1164    0.0  
Solyc10g080540.2.1                                                    86.1    6e-16


>Solyc05g008050.3.1 
Length=630

 Score = 1164 bits (630),  Expect = 0.0
 Identities = 630/630 (100%), Gaps = 0/630 (0%)
 Strand=Plus/Minus

Query  291  TTAGTCTCTGACATTAGTCCTGGTGACGCGTTCACAATGAGGACACATGGTGAGGGTAGA  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  630  TTAGTCTCTGACATTAGTCCTGGTGACGCGTTCACAATGAGGACACATGGTGAGGGTAGA  571

Query  351  CGCCGGTAGGGGATGGCAACTATGGGGTGATAACACCGTTGGCGGACCTACTTTCATGGC  410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  570  CGCCGGTAGGGGATGGCAACTATGGGGTGATAACACCGTTGGCGGACCTACTTTCATGGC  511

Query  411  TCGTAACTCTTCAACTTCTTTCTTTAATCTTTGATTTTGTTCACTCAATGAACCAAACCA  470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  TCGTAACTCTTCAACTTCTTTCTTTAATCTTTGATTTTGTTCACTCAATGAACCAAACCA  451

Query  471  TCTCTTTAAGTACTCACATTCCATCTCCGTTTGCTTTAGCTTGCTCCTTGCTCTACGGTT  530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  450  TCTCTTTAAGTACTCACATTCCATCTCCGTTTGCTTTAGCTTGCTCCTTGCTCTACGGTT  391

Query  531  TTGAAACCAAACCTCAACTTGCCTTGCCTTTAACTTTAATTGCATGGCTAAAGCTTCCTT  590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  390  TTGAAACCAAACCTCAACTTGCCTTGCCTTTAACTTTAATTGCATGGCTAAAGCTTCCTT  331

Query  591  TTGTTTCGGATTCAAAGTATGATTTTGCCTAAAGCTTTCTTCAAGAAGAAAAGATTGTTG  650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  330  TTGTTTCGGATTCAAAGTATGATTTTGCCTAAAGCTTTCTTCAAGAAGAAAAGATTGTTG  271

Query  651  TTTTGTTAAACGTAGTTTTTTCCTTGGAGCCCCATTAATATTATCATTATTATTATTATT  710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  270  TTTTGTTAAACGTAGTTTTTTCCTTGGAGCCCCATTAATATTATCATTATTATTATTATT  211

Query  711  ATTAGAGCTTTCTTCTTCTTCTTCCTCCTCCATGCTAATTTCTTCTTCATTTATATTTGA  770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  210  ATTAGAGCTTTCTTCTTCTTCTTCCTCCTCCATGCTAATTTCTTCTTCATTTATATTTGA  151

Query  771  AGGTATTTGATTTATATCAAGCTCTCTCATCATATTATAACGTCCACCACCCCCTTCACC  830
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  AGGTATTTGATTTATATCAAGCTCTCTCATCATATTATAACGTCCACCACCCCCTTCACC  91

Query  831  AGAAGAAGGGAAAGATGAAGAATTAGAAGAAGATCCAGGAATAGACATGGTTAGCTCCAA  890
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  90   AGAAGAAGGGAAAGATGAAGAATTAGAAGAAGATCCAGGAATAGACATGGTTAGCTCCAA  31

Query  891  ACATGTTGAATTTTCTGGCATAATCTCCAT  920
            ||||||||||||||||||||||||||||||
Sbjct  30   ACATGTTGAATTTTCTGGCATAATCTCCAT  1


>Solyc10g080540.2.1 
Length=1065

 Score = 86.1 bits (46),  Expect = 6e-16
 Identities = 154/208 (74%), Gaps = 0/208 (0%)
 Strand=Plus/Minus

Query  469  CATCTCTTTAAGTACTCACATTCCATCTCCGTTTGCTTTAGCTTGCTCCTTGCTCTACGG  528
            ||| |||||||||| ||||| || |  || |||||||| |  ||  |||||||||| |  
Sbjct  785  CATTTCTTTAAGTATTCACAATCTACTTCTGTTTGCTTCAATTTTGTCCTTGCTCTTCTA  726

Query  529  TTTTGAAACCAAACCTCAACTTGCCTTGCCTTTAACTTTAATTGCATGGCTAAAGCTTCC  588
            ||||| |||||||| || ||||| ||||     |  ||||||||| | |||| |||   |
Sbjct  725  TTTTGGAACCAAACTTCCACTTGTCTTGGACGAAGATTTAATTGCTTTGCTAGAGCAAGC  666

Query  589  TTTTGTTTCGGATTCAAAGTATGATTTTGCCTAAAGCTTTCTTCAAGAAGAAAAGATTGT  648
            || ||||| ||||| | ||| |  | ||   | || ||||||||||||| |  |||||||
Sbjct  665  TTCTGTTTAGGATTGAGAGTGTTGTGTTCTTTGAAACTTTCTTCAAGAAAAGCAGATTGT  606

Query  649  TGTTTTGTTAAACGTAGTTTTTTCCTTG  676
            | ||||||||  |  |||||||| ||||
Sbjct  605  TCTTTTGTTAGTCTAAGTTTTTTTCTTG  578



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 45715776470


  Database: Tomato Genome CDS (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 34,993,605
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5