BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome cDNA (ITAG release 4.0)
           34,075 sequences; 44,419,890 total letters



Query= Untitled_sequence

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc03g112450.4.1                                                    427     2e-119
Solyc11g043150.2.1                                                    355     9e-98 


>Solyc03g112450.4.1 
Length=1611

 Score = 427 bits (231),  Expect = 2e-119
 Identities = 231/231 (100%), Gaps = 0/231 (0%)
 Strand=Plus/Minus

Query  1    CCATTGACGTCACGGTACCCTGATGGGCTGAACCATCTCTAAGCTGGTAAAAAAGATATG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  530  CCATTGACGTCACGGTACCCTGATGGGCTGAACCATCTCTAAGCTGGTAAAAAAGATATG  471

Query  61   TTTTGCCGCTTCCACTTAGCCCAGTGAGTACAATGGTGTTAGATGCTGTACCTTTGAACA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  470  TTTTGCCGCTTCCACTTAGCCCAGTGAGTACAATGGTGTTAGATGCTGTACCTTTGAACA  411

Query  121  AGCGAATGATTAACAACAAAATGAGAGTGGATAATACAACTCCAACAGCAACATACAGTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  AGCGAATGATTAACAACAAAATGAGAGTGGATAATACAACTCCAACAGCAACATACAGTT  351

Query  181  GAACAGGAGGTATATCATTGATGAATTTTTCAGCTTCATTTACCCATTGCT  231
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  350  GAACAGGAGGTATATCATTGATGAATTTTTCAGCTTCATTTACCCATTGCT  300


>Solyc11g043150.2.1 
Length=978

 Score = 355 bits (192),  Expect = 9e-98
 Identities = 218/231 (94%), Gaps = 0/231 (0%)
 Strand=Plus/Minus

Query  1    CCATTGACGTCACGGTACCCTGATGGGCTGAACCATCTCTAAGCTGGTAAAAAAGATATG  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  CCATTGATGTCACGGTACCCTGATGGGCTGAACCATCTCTAAGCTGGTAAAAAAGATATG  376

Query  61   TTTTGCCGCTTCCACTTAGCCCAGTGAGTACAATGGTGTTAGATGCTGTACCTTTGAACA  120
            ||||||||||||||||||||||||||||||| ||||||||||||| ||| |  |||||||
Sbjct  375  TTTTGCCGCTTCCACTTAGCCCAGTGAGTACGATGGTGTTAGATGTTGTGCGCTTGAACA  316

Query  121  AGCGAATGATTAACAACAAAATGAGAGTGGATAATACAACTCCAACAGCAACATACAGTT  180
            |||| |||||||||||||||||||||||| ||||||||||||||||||||  ||||||||
Sbjct  315  AGCGGATGATTAACAACAAAATGAGAGTGAATAATACAACTCCAACAGCAGTATACAGTT  256

Query  181  GAACAGGAGGTATATCATTGATGAATTTTTCAGCTTCATTTACCCATTGCT  231
            ||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct  255  GAACAGGAGGTATATGATTGATGAATTCTTCAGCTTCATTTAACCATTGCT  205



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 10813318320


  Database: Tomato Genome cDNA (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:18 PM
  Number of letters in database: 44,419,890
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5