BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=23
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch03                                                             36.2    0.030
SL4.0ch08                                                             32.5    0.38 


>SL4.0ch03 
Length=65298490

 Score = 36.2 bits (19),  Expect = 0.030
 Identities = 22/23 (96%), Gaps = 1/23 (4%)
 Strand=Plus/Minus

Query  1         TGAGCAGTGAGCTTCTGC-TGAA  22
                 |||||||||||||||||| ||||
Sbjct  64964419  TGAGCAGTGAGCTTCTGCATGAA  64964397


>SL4.0ch08 
Length=63995357

 Score = 32.5 bits (17),  Expect = 0.38
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  3         AGCAGTGAGCTTCTGCT  19
                 |||||||||||||||||
Sbjct  61103863  AGCAGTGAGCTTCTGCT  61103879



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 2347559319


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5