BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch10                                                             957     0.0  


>SL4.0ch10 
Length=64792705

 Score = 957 bits (518),  Expect = 0.0
 Identities = 518/518 (100%), Gaps = 0/518 (0%)
 Strand=Plus/Plus

Query  279     AGCATCTGATCCAGAGAGCTTGAGATGGAACCAACAGGCAGAACTTGTACACTGCAGATG  338
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  808834  AGCATCTGATCCAGAGAGCTTGAGATGGAACCAACAGGCAGAACTTGTACACTGCAGATG  808893

Query  339     GGCAATGTTGGGAGCTGCAGGAATTTTCATTCCAGAATTACTCACAAAAATTGGAATACT  398
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  808894  GGCAATGTTGGGAGCTGCAGGAATTTTCATTCCAGAATTACTCACAAAAATTGGAATACT  808953

Query  399     TAACACACCTTCATGGTACACTGCTGGTGAACAAGAATATTTCACGGACACAACGACTCT  458
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  808954  TAACACACCTTCATGGTACACTGCTGGTGAACAAGAATATTTCACGGACACAACGACTCT  809013

Query  459     CTTCATCGTTGAATTGGTACTTATTGGTTGGGCTGAGGGAAGAAGATGGGCAGATATCAT  518
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809014  CTTCATCGTTGAATTGGTACTTATTGGTTGGGCTGAGGGAAGAAGATGGGCAGATATCAT  809073

Query  519     CAAGCCTGGATGCGTTAACACGGATCCAATCTTCCCTAACAACAAGCTCACGGGGACAGA  578
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809074  CAAGCCTGGATGCGTTAACACGGATCCAATCTTCCCTAACAACAAGCTCACGGGGACAGA  809133

Query  579     TGTTGGTTATCCAGGAGGTTTATGGTTTGATCCCTTGGGTTGGGGTTCGGGTTCACCTGC  638
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809134  TGTTGGTTATCCAGGAGGTTTATGGTTTGATCCCTTGGGTTGGGGTTCGGGTTCACCTGC  809193

Query  639     AAAGATAAAGGAGTTGAGGACAAAGGAGATTAAGAACGGTAGACTTGCTATGTTAGCCGT  698
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809194  AAAGATAAAGGAGTTGAGGACAAAGGAGATTAAGAACGGTAGACTTGCTATGTTAGCCGT  809253

Query  699     TATGGGTGCATGGTTCCAACACATTTACACTGGAACAGGCCCTATTGATAACCTATTTGC  758
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809254  TATGGGTGCATGGTTCCAACACATTTACACTGGAACAGGCCCTATTGATAACCTATTTGC  809313

Query  759     TCACCTAGCTGATCCTGGTCATGCCACTATTTTTGCTG  796
               ||||||||||||||||||||||||||||||||||||||
Sbjct  809314  TCACCTAGCTGATCCTGGTCATGCCACTATTTTTGCTG  809351


 Score = 348 bits (188),  Expect = 9e-94
 Identities = 188/188 (100%), Gaps = 0/188 (0%)
 Strand=Plus/Plus

Query  55      AGTTCGAGGAGAAATGGATCAATTGTAGGAACAACAAAAGCTTCATTCCTTGGAGGAAGA  114
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  807376  AGTTCGAGGAGAAATGGATCAATTGTAGGAACAACAAAAGCTTCATTCCTTGGAGGAAGA  807435

Query  115     AGATTGAGAGTAAGCAAATACAGTACTACACCTACAGCACGAAGTGCAACTACAGTGTGC  174
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  807436  AGATTGAGAGTAAGCAAATACAGTACTACACCTACAGCACGAAGTGCAACTACAGTGTGC  807495

Query  175     GTTGCTGCAGACCCTGACAGACCCCTCTGGTTCCCTGGCAGCACCCCACCTCCATGGCTT  234
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  807496  GTTGCTGCAGACCCTGACAGACCCCTCTGGTTCCCTGGCAGCACCCCACCTCCATGGCTT  807555

Query  235     GATGGCAG  242
               ||||||||
Sbjct  807556  GATGGCAG  807563


 Score = 104 bits (56),  Expect = 2e-20
 Identities = 56/56 (100%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  1       ATGGCCTCAGCTTGTGCTTCATCCACCATTGCTGCTGTTGCTTTTTCTTCTCCAAG  56
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  806406  ATGGCCTCAGCTTGTGCTTCATCCACCATTGCTGCTGTTGCTTTTTCTTCTCCAAG  806461


 Score = 78.7 bits (42),  Expect = 1e-12
 Identities = 42/42 (100%), Gaps = 0/42 (0%)
 Strand=Plus/Plus

Query  239     GCAGCCTTCCCGGAGACTTCGGTTTCGATCCTCTTGGTCTAG  280
               ||||||||||||||||||||||||||||||||||||||||||
Sbjct  807923  GCAGCCTTCCCGGAGACTTCGGTTTCGATCCTCTTGGTCTAG  807964



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 614277940165


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5