BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato genome chromosomes (Build SL4.0) 13 sequences; 782,520,033 total letters Query= Untitled_sequence Length=133 Score E Sequences producing significant alignments: (Bits) Value SL4.0ch11 246 4e-64 SL4.0ch08 235 1e-60 >SL4.0ch11 Length=54379777 Score = 246 bits (133), Expect = 4e-64 Identities = 133/133 (100%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52978325 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCT 52978384 Query 61 TAATGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52978385 TAATGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGA 52978444 Query 121 AGCTTTGAGGCTT 133 ||||||||||||| Sbjct 52978445 AGCTTTGAGGCTT 52978457 Score = 202 bits (109), Expect = 1e-50 Identities = 125/133 (94%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCT 60 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 52642787 GATTGTGCTAAGTGATGCAGAGAATAAGCAGGCGTCAAATCCATCTGTGAGCGACTGGCT 52642728 Query 61 TAATGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGA 120 ||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||| Sbjct 52642727 TAATGAGCTTCGAGATGCTGTGGACTCTGCGGAGAACTTAATAGAAGAAGTCAATTATGA 52642668 Query 121 AGCTTTGAGGCTT 133 ||| |||||||| Sbjct 52642667 AGCACTGAGGCTT 52642655 Score = 169 bits (91), Expect = 1e-40 Identities = 117/130 (90%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 4 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAA 63 |||||||||||||||||||||||||||||||||||||| || |||||| || |||||||| Sbjct 52970834 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCAATTTGTGAGAGAGTGGCTTAA 52970893 Query 64 TGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGC 123 |||||||||||||||||| || ||||||||| || || ||| |||||||||||||||| Sbjct 52970894 TGAGCTTCGAGATGCTGTGGATGGTGCTGAAAACTTGATTGAACAAGTCAATTATGAAGC 52970953 Query 124 TTTGAGGCTT 133 |||||| ||| Sbjct 52970954 TTTGAGACTT 52970963 Score = 163 bits (88), Expect = 5e-39 Identities = 116/130 (89%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 4 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAA 63 |||| ||||||||||||||| ||||||||||||||||| || ||||||| | |||||||| Sbjct 49432533 TGTGTTAAGTGATGCAGAGAGTAAGCAAGCATCAAATCAATTTGTGAGCCAGTGGCTTAA 49432592 Query 64 TGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGC 123 ||||||||||||| |||| ||||||||||||||||| || ||| ||||||||||||| | Sbjct 49432593 TGAGCTTCGAGATACTGTGGACTCTGCTGAAAATTTGATGGAACAAGTCAATTATGAGGT 49432652 Query 124 TTTGAGGCTT 133 |||||| ||| Sbjct 49432653 TTTGAGACTT 49432662 Score = 163 bits (88), Expect = 5e-39 Identities = 116/130 (89%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 4 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAA 63 |||||||| ||| |||||||||||||| |||||||||| || |||||| || |||||||| Sbjct 52590527 TGTGCTAACTGACGCAGAGAATAAGCAGGCATCAAATCAATTTGTGAGAGAGTGGCTTAA 52590586 Query 64 TGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGC 123 |||||||||| ||||||| |||||||||||||| || || ||| |||||||||||||||| Sbjct 52590587 TGAGCTTCGACATGCTGTAGACTCTGCTGAAAACTTGATTGAACAAGTCAATTATGAAGC 52590646 Query 124 TTTGAGGCTT 133 ||||| |||| Sbjct 52590647 TTTGAAGCTT 52590656 Score = 158 bits (85), Expect = 2e-37 Identities = 115/130 (88%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 4 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAA 63 |||||||| |||||||||||||||||| |||||||||| | ||| || || |||||||| Sbjct 52323551 TGTGCTAACTGATGCAGAGAATAAGCAGGCATCAAATCACTTTGTTAGAGAGTGGCTTAA 52323610 Query 64 TGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGC 123 |||||||||| ||||||| |||||||||||||| || || ||| |||||||||||||||| Sbjct 52323611 TGAGCTTCGACATGCTGTAGACTCTGCTGAAAACTTGATTGAACAAGTCAATTATGAAGC 52323670 Query 124 TTTGAGGCTT 133 ||||| |||| Sbjct 52323671 TTTGAAGCTT 52323680 Score = 158 bits (85), Expect = 2e-37 Identities = 115/130 (88%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 4 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAA 63 ||||||||||||||||||||||||||| |||||||||| || |||||| || |||||||| Sbjct 52353748 TGTGCTAAGTGATGCAGAGAATAAGCAGGCATCAAATCAATTTGTGAGAGAATGGCTTAA 52353689 Query 64 TGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGC 123 || |||||||| ||||| |||||||||||||| | || ||| |||||||||||||||| Sbjct 52353688 TGGGCTTCGAGTCGCTGTGGACTCTGCTGAAAACATGATTGAACAAGTCAATTATGAAGC 52353629 Query 124 TTTGAGGCTT 133 ||||| |||| Sbjct 52353628 TTTGAAGCTT 52353619 Score = 152 bits (82), Expect = 1e-35 Identities = 117/134 (87%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 1 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCT 60 ||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||| | Sbjct 52964730 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCGACATGTGAGCCAATGGTT 52964789 Query 61 TAATGAGCTTC-GAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATG 119 |||| |||||| ||| |||||| || |||||||| || ||||||||| ||||||||| Sbjct 52964790 TAATAAGCTTCAGAG-TGCTGTGGAAGGCGCTGAAAACTTGATAGAAGAATTCAATTATG 52964848 Query 120 AAGCTTTGAGGCTT 133 |||||||||||||| Sbjct 52964849 AAGCTTTGAGGCTT 52964862 Score = 147 bits (79), Expect = 5e-34 Identities = 116/134 (87%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 1 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCT 60 ||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||| | Sbjct 53367263 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCGACATGTGAGCCAATGGTT 53367204 Query 61 TAATGAGCTTC-GAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATG 119 |||| |||||| ||| |||||| || |||||||| || ||||||||| ||||||||| Sbjct 53367203 TAATAAGCTTCAGAG-TGCTGTGGAAGGCGCTGAAAACTTGATAGAAGAATTCAATTATG 53367145 Query 120 AAGCTTTGAGGCTT 133 |||||||||| ||| Sbjct 53367144 AAGCTTTGAGACTT 53367131 Score = 137 bits (74), Expect = 3e-31 Identities = 108/125 (86%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 4 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAA 63 ||||||||||||||| ||||||||||| ||||||||| || |||||| || ||||| || Sbjct 51171584 TGTGCTAAGTGATGCGGAGAATAAGCAGGCATCAAATGAATTTGTGAGAGAGTGGCTCAA 51171643 Query 64 TGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGC 123 |||||||||| |||||| |||||||||||||| || || ||| || ||||||||||||| Sbjct 51171644 CGAGCTTCGAGTTGCTGTAGACTCTGCTGAAAACTTGATTGAACAATTCAATTATGAAGC 51171703 Query 124 TTTGA 128 | ||| Sbjct 51171704 TATGA 51171708 Score = 135 bits (73), Expect = 1e-30 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAA 63 |||||||| |||||||||||||||||| |||||||||| || |||||| || |||||||| Sbjct 52346089 TGTGCTAACTGATGCAGAGAATAAGCAGGCATCAAATCAATTTGTGAGAGAGTGGCTTAA 52346030 Query 64 TGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTC 112 |||||||||| ||||||| |||||||||||||| || || ||| ||||| Sbjct 52346029 TGAGCTTCGACATGCTGTAGACTCTGCTGAAAACTTGATTGAACAAGTC 52345981 Score = 132 bits (71), Expect = 1e-29 Identities = 106/123 (86%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 12 GTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAATGAGCTTC 71 ||||| ||||||||||||| |||||||||| | ||||||| | |||| | || |||||| Sbjct 29387773 GTGATCCAGAGAATAAGCAGGCATCAAATCAGTTTGTGAGCCAGTGGCATGATAAGCTTC 29387714 Query 72 GAGATGCTGTTGACTCTGCTGAAA-ATTTAATAGAAGAAGTCAATTATGAAGCTTTGAGG 130 |||||||||| ||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct 29387713 GAGATGCTGTGGACTCTGCTGAAATCTTTACT-GAACAAGTCAATTATGAAGCTTTGAGA 29387655 Query 131 CTT 133 ||| Sbjct 29387654 CTT 29387652 Score = 130 bits (70), Expect = 5e-29 Identities = 110/130 (85%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 4 TGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAA 63 ||||||||| ||||||||||| ||||| ||||||||| || ||| ||| | |||||| | Sbjct 47952339 TGTGCTAAGGGATGCAGAGAACAAGCAGACATCAAATCAATATGTCAGCCAGTGGCTTGA 47952280 Query 64 TGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGC 123 |||| ||||| ||||||| ||| |||||||| ||||| ||| |||||||||||||||| Sbjct 47952279 TGAGTTTCGACATGCTGTCGACGGCGCTGAAAACTTAATGGAACAAGTCAATTATGAAGC 47952220 Query 124 TTTGAGGCTT 133 ||||||| || Sbjct 47952219 TTTGAGGATT 47952210 Score = 91.6 bits (49), Expect = 2e-17 Identities = 108/136 (79%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 1 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAAT--CCATCTGTGAGCGACTGG 58 |||||| || ||||||| ||||||||| ||| |||||||| || | ||||| | || Sbjct 36312832 GATTGTTCTTAGTGATGTAGAGAATAATCAAACATCAAATTGACA-C-ATGAGCCAGCGG 36312889 Query 59 CTTAATGAGCTTCGAGA-TGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTA 117 || || |||||| ||| || ||| || |||||||| || |||||| |||||||||| Sbjct 36312890 TTTGATAAGCTTC-AGAGTGTTGTGCACAACGCTGAAAACTTGATAGAACAAGTCAATTA 36312948 Query 118 TGAAGCTTTGAGGCTT 133 |||||||||||||||| Sbjct 36312949 TGAAGCTTTGAGGCTT 36312964 Score = 86.1 bits (46), Expect = 1e-15 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 3 TTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTA 62 ||||||| ||| |||||||||||||||| ||||||||| || ||| ||| ||| |||| Sbjct 32382124 TTGTGCTTAGTAATGCAGAGAATAAGCAGACATCAAATCAATATGTTAGCCACTTGCTTG 32382183 Query 63 ATGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAAT 115 || || ||||| ||||||| ||| ||| |||| ||||| ||| |||| ||| Sbjct 32382184 ATAAGTTTCGACATGCTGTCGACGACGCTAAAAACTTAATGGAACAAGT-AAT 32382235 >SL4.0ch08 Length=63995357 Score = 235 bits (127), Expect = 1e-60 Identities = 131/133 (98%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1 GATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCT 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2168284 GATTGTGCTGAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCT 2168343 Query 61 TAATGAGCTTCGAGATGCTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGA 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2168344 TAATGAGCTTCGAGATACTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGA 2168403 Query 121 AGCTTTGAGGCTT 133 ||||||||||||| Sbjct 2168404 AGCTTTGAGGCTT 2168416 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83729607365 Database: Tomato genome chromosomes (Build SL4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 782,520,033 Number of sequences in database: 13 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5