BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome CDS (ITAG release 4.0) 34,075 sequences; 34,993,605 total letters Query= Untitled_sequence Length=300 Score E Sequences producing significant alignments: (Bits) Value Solyc03g025930.4.1 555 7e-158 Solyc03g025920.4.1 272 8e-73 Solyc03g025940.3.1 252 1e-66 Solyc03g026400.3.1 139 9e-33 Solyc03g062800.1.1 115 1e-25 Solyc03g096620.3.1 97.1 5e-20 Solyc03g150103.1.1 80.5 5e-15 Solyc01g150123.1.1 69.4 1e-11 Solyc01g015130.1.1 69.4 1e-11 >Solyc03g025930.4.1 Length=867 Score = 555 bits (300), Expect = 7e-158 Identities = 300/300 (100%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1 GTTAACGACAATCAATTGACTACTGCTGCGGAGAGGTGTCCACGGCTTAAACGCCTAGTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 GTTAACGACAATCAATTGACTACTGCTGCGGAGAGGTGTCCACGGCTTAAACGCCTAGTT 423 Query 61 ATGCCTTCTTGGGACAAAATTAAAAAGCGAACAATGTGCAGGGCTATTCATATATGGAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 ATGCCTTCTTGGGACAAAATTAAAAAGCGAACAATGTGCAGGGCTATTCATATATGGAAT 483 Query 121 GATCTTGAGTCACTAACGATGCCAAGTATAAAAAATCCTGCACGTGTCATAGAGGAAATT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 GATCTTGAGTCACTAACGATGCCAAGTATAAAAAATCCTGCACGTGTCATAGAGGAAATT 543 Query 181 GGCAGGAGTTGCCAAAAATTTGTTGCACTCAAAATTATGGAGCCCTGTGATATGCTTTTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 GGCAGGAGTTGCCAAAAATTTGTTGCACTCAAAATTATGGAGCCCTGTGATATGCTTTTT 603 Query 241 GCATCTTCACTGGCTTCATTTCTTCCAAACTTGGAAGTTTTGAGTGTGAGGTGCACGGTT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 GCATCTTCACTGGCTTCATTTCTTCCAAACTTGGAAGTTTTGAGTGTGAGGTGCACGGTT 663 >Solyc03g025920.4.1 Length=945 Score = 272 bits (147), Expect = 8e-73 Identities = 245/293 (84%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 6 CGACAATCAATTGACTACTGCTGCGGAGAGGTGTCCACGGCTTAAACGCCTAGTTATGCC 65 |||| |||| |||||| | |||| |||||||||||||| || ||||| || |||||||| Sbjct 330 CGACGATCAGTTGACTTATACTGCCGAGAGGTGTCCACGTCTAAAACGTCTCGTTATGCC 389 Query 66 TTCTTGGGACAAAATTAAAAAGCGAACAATGTGCAGGGCTATTCATATATGGAATGATCT 125 | ||||| ||| ||| |||||| | ||| ||||||||||||||||| ||| | ||||| Sbjct 390 TGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCT 449 Query 126 TGAGTCACTAACGATGCCAAGTATAAAAAATCCTGCACG--TGTCATAGAGGAAATTGGC 183 ||| ||||| |||||||| |||||| ||||||| | || |||||| |||||||||| Sbjct 450 TGAATCACTGACGATGCCTAGTATAGCAAATCCT-C-CGTATGTCATGGAGGAAATTGCA 507 Query 184 AGGAGTTGCCAAAAATTTGTTGCACTCAAAATTATGGAGCCCTGTGATATGCTTTTTGCA 243 ||||||||| |||| |||| || ||||| || |||| ||||||||||||||| |||||| Sbjct 508 AGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGGCCCTGTGATATGCTCTTTGCA 567 Query 244 TCTTCACTGGCTTCATTTCTTCCAAACTTGGAAGTTTTGAGTGTGAGGTGCAC 296 ||| |||||| |||||||||||||||||| |||| ||||||||||||||||| Sbjct 568 TCTACACTGGTATCATTTCTTCCAAACTTGAAAGTGTTGAGTGTGAGGTGCAC 620 >Solyc03g025940.3.1 Length=1008 Score = 252 bits (136), Expect = 1e-66 Identities = 245/299 (82%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 1 GTTAACGACAATCAATTGACTACTGCTGCGGAGAGGTGTCCACGGCTTAAACGCCTAGTT 60 ||| || |||||||| ||||| | | || ||||||||||||||||||||||||| ||| Sbjct 367 GTTGACAACAATCAACTGACTTATACAGCCAAGAGGTGTCCACGGCTTAAACGCCTTGTT 426 Query 61 ATGCCTTCTTGGGACAAAATTA-AAAAGCGAACAATGTGCAGGGCTATTCATATATGGAA 119 |||||| ||||||| |||| || ||||||||||||| ||||| ||| |||| |||||| Sbjct 427 ATGCCTGCTTGGGA-AAAACTAGAAAAGCGAACAATATGCAGTGCTTTTCAGGAATGGAA 485 Query 120 TGATCTTGAGTCACTAACGATGCCAAGTATAAAAAATCCTGCACGTGTCATAGAGGAAAT 179 |||||||| ||||| |||||||| ||| || || | |||||| |||||| ||| |||| Sbjct 486 AGATCTTGAATCACTGACGATGCCTAGTTTAGAAGAACCTGCATATGTCATTGAGAAAAT 545 Query 180 TGGCAGGAGTTGCCAAAAATTTGTTGCACTCAAAATTATGGAGCCCTGTGATATGCTTTT 239 ||| ||||||||| ||||| || || || || |||||||| ||||| ||| | || | Sbjct 546 TGGAAGGAGTTGCAAAAAAATTTCTGAGCTAAAGATTATGGACCCCTGCGATGTACTGCT 605 Query 240 TGCATCTTCACTGGCTTCATTTCTTCCAAACTTGGAAGTTTTGAGTGTGAGGTGCACGG 298 ||||||| |||||| ||||||||||||||||| |||| |||||||||||||| |||| Sbjct 606 TGCATCTGCACTGGTCGCATTTCTTCCAAACTTGAAAGTGTTGAGTGTGAGGTGTACGG 664 >Solyc03g026400.3.1 Length=357 Score = 139 bits (75), Expect = 9e-33 Identities = 121/143 (85%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 159 TGCACGTGTCATAGAGGAAATTGGCAGGAGTTGCCAAAAATTTGTTGCA--CTCAAAATT 216 |||||||||||| ||||||||||| ||||||||||||||| | || || || ||| || Sbjct 2 TGCACGTGTCATTGAGGAAATTGGAAGGAGTTGCCAAAAAAAT-TTCCATGCTTAAAGTT 60 Query 217 ATGGAGCCCTGTGATATGCTTTTTGCATCTTCACTGGCTTCATTTCTTCCAAACTTGGAA 276 | | ||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 61 GTAGGGCCCTGTGATAAGCTCTTTGCATCTGCACTGGCTTCATTTCTTCTAAACTTGGAA 120 Query 277 GTTTTGAGTGTGAGGTGCACGGT 299 | |||||| |||| |||| ||| Sbjct 121 ATATTGAGTCTGAGATGCATGGT 143 >Solyc03g062800.1.1 Length=303 Score = 115 bits (62), Expect = 1e-25 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 217 ATGGAGCCCTGTGATATGCTTTTTGCATCTTCACTGGCTTCATTTCTTCCAAACTTGGAA 276 |||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||| Sbjct 1 ATGGGGCCCTGTGATATGTTGTTTGCATCTGCACTGGCTTCATTTCTTCCAAACTTAGAA 60 Query 277 GTTTTGAGTGTGAGGTGCACGGT 299 || |||||| ||||||||||||| Sbjct 61 GTATTGAGTTTGAGGTGCACGGT 83 >Solyc03g096620.3.1 Length=762 Score = 97.1 bits (52), Expect = 5e-20 Identities = 122/154 (79%), Gaps = 11/154 (7%) Strand=Plus/Plus Query 121 GATCTTGAGTCACTAACGATGCCAAGTATAAAAAATCCTGCACGTGTCATAGAGGAAATT 180 |||||||| |||| ||||| ||| |||||||||||||||||| | || | ||| Sbjct 454 GATCTTGAATCACAAACGAGGCCTAGTATAAAAAATCCTGCA----T-AT----GTCATT 504 Query 181 GGCAGGAGTTGCCAAAAATTTGTTGCACTCAAAATTATGGAGCCC-TGTGATATGCTTTT 239 | |||||||||| ||||| || || ||||| || || ||||| ||||||||| | || Sbjct 505 GCCAGGAGTTGCAAAAAACTTTCTGAGCTCAAGATAAT-AAGCCCATGTGATATGTTGTT 563 Query 240 TGCATCTTCACTGGCTTCATTTCTTCCAAACTTG 273 ||||||| |||||| |||||||||||||||||| Sbjct 564 TGCATCTGCACTGGTATCATTTCTTCCAAACTTG 597 >Solyc03g150103.1.1 Length=258 Score = 80.5 bits (43), Expect = 5e-15 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 61 ATGCCTTCTTGGGACAAAATTAAAAA-GCGAACAATGTGCAGGGCTATTCATATATGGAA 119 |||||||||||| |||||| |||||| || | |||| |||||||| |||| | ||||||| Sbjct 183 ATGCCTTCTTGGAACAAAAATAAAAAAGCAAGCAATATGCAGGGC-ATTCGTCTATGGAA 241 Query 120 TGATCTTGAGTCACTAA 136 |||||||| ||||||| Sbjct 242 AGATCTTGAATCACTAA 258 >Solyc01g150123.1.1 Length=459 Score = 69.4 bits (37), Expect = 1e-11 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 169 ATAGAGGAAATTGGCAGGAGTTGCCA-AAAATTTGTTGCACTCAAAATTATGGAGCCCTG 227 || ||| ||||||| ||||||||| | ||||||| || ||||| |||||| ||||| Sbjct 178 ATTGAGAAAATTGGTAGGAGTTGCAAGAAAATTT-CTGAGCTCAAGATTATGACTCCCTG 236 Query 228 TGATATGCTTTTTGCATCTTCACTGGCTTCATTTCTTCCAAACTTGGAAGTTTTGAGTGT 287 ||| | || ||| ||| ||||| | ||| ||| || | || || |||| |||||||| Sbjct 237 CGATTTACTACTTGTATCGTCACTAGTCTCACTTCCTCTATACATGAAAGTGTTGAGTGT 296 Query 288 GAGGTGCACGG 298 |||||| |||| Sbjct 297 GAGGTGTACGG 307 >Solyc01g015130.1.1 Length=270 Score = 69.4 bits (37), Expect = 1e-11 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 223 CCCTGTGATATGCTTTTTGCATCTTCACTGGCTTCATTTCTTCCAAACTTGGAAGTTTTG 282 ||||| || || | ||||||||| |||| | |||||||||||||||||| |||| ||| Sbjct 7 CCCTGCGACATTGTATTTGCATCTGCACTTGTCTCATTTCTTCCAAACTTGAAAGTGTTG 66 Query 283 AGTGTGAGGT 292 |||||||||| Sbjct 67 AGTGTGAGGT 76 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9432522180 Database: Tomato Genome CDS (ITAG release 4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 34,993,605 Number of sequences in database: 34,075 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5