BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: N.benthamiana Genome v1.0.1 Contigs
           288,736 sequences; 2,489,231,992 total letters



Query= Untitled_sequence

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Niben101Scf00141Ctg008                                                344     2e-92


>Niben101Scf00141Ctg008 
Length=6221

 Score = 344 bits (186),  Expect = 2e-92
 Identities = 309/368 (84%), Gaps = 10/368 (3%)
 Strand=Plus/Plus

Query  34    AACATGGTGATGAAGATGAATTTCTATTGGGGTAAAGATGTGACAATCTTATTCAAAGGA  93
             |||||||  ||| ||||| ||||||||||||| ||| | | ||| || ||||||||||| 
Sbjct  1375  AACATGGGCATGCAGATGTATTTCTATTGGGGAAAAAACGCGACGATTTTATTCAAAGGT  1434

Query  94    TGGCCAGACAATAACCTAGGCATGTACATATTGTCGTTGTTCTTTGTTTTCTTTACGGCT  153
             ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| 
Sbjct  1435  TGGCCAGACAATAACCTAGGCATGTACATATTGTCTTTGTTCTTCGTTTTCTTTATGGCC  1494

Query  154   TTTGGTGTCGAGATTATGTCGATGGGTCCGATAATGATGAACAAGAG---G---CCCATT  207
             |||| ||||||||||||||||||||||| || ||  || ||||||||   |   ||||| 
Sbjct  1495  TTTGCTGTCGAGATTATGTCGATGGGTCTGA-AA--ATCAACAAGAGTATGCATCCCATA  1551

Query  208   GCTGGTGGACTGATTCAAGATGGGATCTATTATAGTGTTCGAATGGTTCTTGTTTATTTT  267
             | ||||||||||||||   ||  ||| | ||||| |||||||||||||||||||||||||
Sbjct  1552  GTTGGTGGACTGATTCTGAATTCGATTTTTTATACTGTTCGAATGGTTCTTGTTTATTTT  1611

Query  268   GTTATGCTTGCTGTAATGTCCTTCAACATTGGTATTTTCATTGTTGCTATTTTAGGCCAT  327
             |||||||||||||| |||||||||||  |||| |||||| ||||||| || |||||||||
Sbjct  1612  GTTATGCTTGCTGTTATGTCCTTCAATGTTGGAATTTTCGTTGTTGCAATCTTAGGCCAT  1671

Query  328   GGTTTGGGTTATATTTTCATAAAATTCCATGAACTTGCCTCGGCTGATTCTCCTACAGAG  387
             |||||||| ||| | ||  | ||||| | |||||||||  | |||||||||||  || ||
Sbjct  1672  GGTTTGGGGTATTTCTTAGTTAAATTTCGTGAACTTGCGGCAGCTGATTCTCCAGCACAG  1731

Query  388   ACCACGGG  395
             |||| |||
Sbjct  1732  ACCA-GGG  1738



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 992343459200


  Database: N.benthamiana Genome v1.0.1 Contigs
    Posted date:  Mar 21, 2024  3:58 PM
  Number of letters in database: 2,489,231,992
  Number of sequences in database:  288,736



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5