BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato genome chromosomes (build SL2.50) 13 sequences; 823,944,041 total letters Query= Untitled_sequence Length=1524 Score E Sequences producing significant alignments: (Bits) Value SL2.50ch04No definition line found 647 0.0 SL2.50ch03No definition line found 117 5e-24 SL2.50ch06No definition line found 106 1e-20 SL2.50ch11No definition line found 95.3 3e-17 >SL2.50ch04 No definition line found Length=66470942 Score = 647 bits (350), Expect = 0.0 Identities = 350/350 (100%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 1175 AGATGGGTTCATCAATGAAGCCTATCATCTTTGGTGATAATGTGGCAACAGCTCTTAGAA 1234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39553182 AGATGGGTTCATCAATGAAGCCTATCATCTTTGGTGATAATGTGGCAACAGCTCTTAGAA 39553123 Query 1235 GCTGGCACCATACAGCGAAAAAACGGGTGAAACATGGGCTATCAGGACATACCACCCCTG 1294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39553122 GCTGGCACCATACAGCGAAAAAACGGGTGAAACATGGGCTATCAGGACATACCACCCCTG 39553063 Query 1295 CAAACAGCAGACCAACCACACCATTGCGTGGTACCTCCCCTGTTCACTTATTACGCGGTT 1354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39553062 CAAACAGCAGACCAACCACACCATTGCGTGGTACCTCCCCTGTTCACTTATTACGCGGTT 39553003 Query 1355 ATCCACAATATAATGAGGACAGTGTTCAAGCATCTCCTCGGACATCCAATGTCGAAAATG 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39553002 ATCCACAATATAATGAGGACAGTGTTCAAGCATCTCCTCGGACATCCAATGTCGAAAATG 39552943 Query 1415 AAGGGTGGGCTAATGAAAATCAGGAGGGAGAGATCCTGCAGCATGCCTCCACTGATCATA 1474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39552942 AAGGGTGGGCTAATGAAAATCAGGAGGGAGAGATCCTGCAGCATGCCTCCACTGATCATA 39552883 Query 1475 ACAAGCAAATTGAGATTACAATGTCAGATTTTACTTTTGGAAACAAATAA 1524 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39552882 ACAAGCAAATTGAGATTACAATGTCAGATTTTACTTTTGGAAACAAATAA 39552833 Score = 322 bits (174), Expect = 1e-85 Identities = 174/174 (100%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 838 ATAATATTGCTAGTTGGCACAAAACTTCAAATGATCATAACAGAAATGGGAGTAAGGATT 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39554081 ATAATATTGCTAGTTGGCACAAAACTTCAAATGATCATAACAGAAATGGGAGTAAGGATT 39554022 Query 898 TCAGAAAGGGGAGACATAGTAAAAGGTGTACCTGTGGTGGAGACTGGTGACCATCTTTTC 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39554021 TCAGAAAGGGGAGACATAGTAAAAGGTGTACCTGTGGTGGAGACTGGTGACCATCTTTTC 39553962 Query 958 TGGTTTAATCGCCCTGCCCTTGTCCTATTCTTGATTAACTTTGTACTCTTTCAG 1011 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39553961 TGGTTTAATCGCCCTGCCCTTGTCCTATTCTTGATTAACTTTGTACTCTTTCAG 39553908 Score = 291 bits (157), Expect = 3e-76 Identities = 157/157 (100%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 154 GAACTTATGCTGTTGGGATTCTTATCACTGTTGTTGACAGTGTTGCAAGATCCAGTTTCT 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39557651 GAACTTATGCTGTTGGGATTCTTATCACTGTTGTTGACAGTGTTGCAAGATCCAGTTTCT 39557592 Query 214 AACTTATGTGTCCCCAAGAGTGTTGGTTATTCATGGCATCCTTGTATGGCAAAGGAAGAT 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39557591 AACTTATGTGTCCCCAAGAGTGTTGGTTATTCATGGCATCCTTGTATGGCAAAGGAAGAT 39557532 Query 274 GCCAAGTCTGAGTATGATGACCCTTGTCTACCAAAGG 310 ||||||||||||||||||||||||||||||||||||| Sbjct 39557531 GCCAAGTCTGAGTATGATGACCCTTGTCTACCAAAGG 39557495 Score = 220 bits (119), Expect = 4e-55 Identities = 119/119 (100%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 308 AGGGAAAAGTGCAATTTGCATCTTCATATGCAATACACCAGCTCCATATCTTCATCTTTG 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39557181 AGGGAAAAGTGCAATTTGCATCTTCATATGCAATACACCAGCTCCATATCTTCATCTTTG 39557122 Query 368 TATTGGCAGTTGCTCATGTATTGTACTGTATAGCAACTTTTGCTTTGGGCAGGCTAAAG 426 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39557121 TATTGGCAGTTGCTCATGTATTGTACTGTATAGCAACTTTTGCTTTGGGCAGGCTAAAG 39557063 Score = 178 bits (96), Expect = 2e-42 Identities = 96/96 (100%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 651 GGCACATTTAACTCCACAAAATCAAAATAATTTTGATTTTCAATTATACATTAACAGAGC 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39555031 GGCACATTTAACTCCACAAAATCAAAATAATTTTGATTTTCAATTATACATTAACAGAGC 39554972 Query 711 AGTTGACAAAGACTTCAAAGTTGTTGTTGGAATAAG 746 |||||||||||||||||||||||||||||||||||| Sbjct 39554971 AGTTGACAAAGACTTCAAAGTTGTTGTTGGAATAAG 39554936 Score = 178 bits (96), Expect = 2e-42 Identities = 96/96 (100%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1 ATGGAGGCAACCCCTACGTGGGCAATTGCTGTGGTTTGCTTCATCTTGCTCGCTATTTCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39557985 ATGGAGGCAACCCCTACGTGGGCAATTGCTGTGGTTTGCTTCATCTTGCTCGCTATTTCT 39557926 Query 61 ATTTTTATTGAACAAATTATTCATCACATTGGAGAG 96 |||||||||||||||||||||||||||||||||||| Sbjct 39557925 ATTTTTATTGAACAAATTATTCATCACATTGGAGAG 39557890 Score = 171 bits (92), Expect = 4e-40 Identities = 92/92 (100%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 487 GACCCTGAGAGATTCAGATTTGCAAGGGAGACCTCGTTTGGACGTAGGCATTTGCATTTC 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39555819 GACCCTGAGAGATTCAGATTTGCAAGGGAGACCTCGTTTGGACGTAGGCATTTGCATTTC 39555760 Query 547 TGGAGCAAGTCCCCCGTGTTGCTCTCGATAGT 578 |||||||||||||||||||||||||||||||| Sbjct 39555759 TGGAGCAAGTCCCCCGTGTTGCTCTCGATAGT 39555728 Score = 141 bits (76), Expect = 3e-31 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 577 GTTTGTTTCTTTCGGCAATTCTTCTCATCAGTTGCAAAAGTTGACTATTTAACCCTTAGA 636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39555203 GTTTGTTTCTTTCGGCAATTCTTCTCATCAGTTGCAAAAGTTGACTATTTAACCCTTAGA 39555144 Query 637 CATGGGTTCATGATGG 652 |||||||||||||||| Sbjct 39555143 CATGGGTTCATGATGG 39555128 Score = 130 bits (70), Expect = 7e-28 Identities = 73/74 (99%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 1047 GTGGAAATTTGGTTTCCCATCTTGCTTTCATAAGAATGCTGCAGACCTAGCCATAAGGCT 1106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39553553 GTGGAAATTTGGTTTCCCATCTTGCTTTCATAAGAATGCTGCAGACCTAGCCATAAGGCT 39553494 Query 1107 AACCATGGGGGTGA 1120 |||||||||| ||| Sbjct 39553493 AACCATGGGG-TGA 39553481 Score = 117 bits (63), Expect = 5e-24 Identities = 63/63 (100%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 425 AGATGAGAAAATGGAGGGCATGGGAGGATGAAACAAAAACAATGGAGTACCAATTCTACA 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39556966 AGATGAGAAAATGGAGGGCATGGGAGGATGAAACAAAAACAATGGAGTACCAATTCTACA 39556907 Query 485 ACG 487 ||| Sbjct 39556906 ACG 39556904 Score = 115 bits (62), Expect = 2e-23 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1115 GGGTGATCATACAGGTCCATTGCAGCTATGTGACTCTCCCTCTTTATGCCTTAGTTACAC 1174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39553335 GGGTGATCATACAGGTCCATTGCAGCTATGTGACTCTCCCTCTTTATGCCTTAGTTACAC 39553276 Query 1175 AGATGGGT 1182 || | ||| Sbjct 39553275 AGGTAGGT 39553268 Score = 111 bits (60), Expect = 3e-22 Identities = 60/60 (100%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 95 AGTGGTTACTGGAAAAGCGGAAAAAGTCTCTATATGAAGCACTTGAAAAGATCAAAGCTG 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39557801 AGTGGTTACTGGAAAAGCGGAAAAAGTCTCTATATGAAGCACTTGAAAAGATCAAAGCTG 39557742 Score = 99.0 bits (53), Expect = 2e-18 Identities = 53/53 (100%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 745 AGTCCTGCATTATGGCTCTTCACGGTGCTATATTTTCTGACTACTACCGATCG 797 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39554557 AGTCCTGCATTATGGCTCTTCACGGTGCTATATTTTCTGACTACTACCGATCG 39554505 Score = 78.7 bits (42), Expect = 3e-12 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 797 GATTGTACTCGTATCTTTGGGTGCCATTTATCCCACTTGTAATAA 841 ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 39554215 GATTGTACTCGTATCTTTGGGTGCCATTTATCCCACTTGTAGTAA 39554171 >SL2.50ch03 No definition line found Length=70787664 Score = 117 bits (63), Expect = 5e-24 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 838 ATAATATTGCTAGTTGGCACAAAACTTCAAATGATCATAACAGAAATGGGAGTAAGGATT 897 |||||||| || || ||||||||| | ||| |||| |||||| |||||||| |||||||| Sbjct 56836180 ATAATATTACTGGTGGGCACAAAATTACAAGTGATTATAACAAAAATGGGATTAAGGATT 56836121 Query 898 TCAGAAAGGGGAGACATAGTAAAAGGTGTACCTGTGGTGGAGACTGGTGACCATCTTTTC 957 |||||| |||||||| || ||||| ||| | || || | || || |||||||| Sbjct 56836120 AAAGAAAGAGGAGACATTGTTAAAGGAACACCATTAGTTGAACCAGGGGATGATCTTTTC 56836061 Query 958 TGGTTTAATCGCCCTGCCCTTGTCCTATTCTTGATTAACTTTGTACTCTTTCAG 1011 ||||||||||| |||| ||| | | ||||| ||| ||||||| ||||||||| Sbjct 56836060 TGGTTTAATCGTCCTGATCTTTTGCACTTCTTCATTCACTTTGTTCTCTTTCAG 56836007 Score = 82.4 bits (44), Expect = 2e-13 Identities = 79/96 (82%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 490 CCTGAGAGATTCAGATTTGCAAGGGAGACCTCGTTTGGACGTAGGCATTTGCATTTCTGG 549 ||||||||||| ||||||||||| || || || |||||||||| ||||||||||||||| Sbjct 56837985 CCTGAGAGATTTAGATTTGCAAGAGAAACATCATTTGGACGTAAACATTTGCATTTCTGG 56837926 Query 550 AGCAAGTCCCCCGTGTTGCTCTCGATAGTTTG-TTT 584 ||||| || || | | |||| |||||| || ||| Sbjct 56837925 AGCAACTCTCCAATTCTTCTCTGGATAGTATGATTT 56837890 >SL2.50ch06 No definition line found Length=49751636 Score = 106 bits (57), Expect = 1e-20 Identities = 136/174 (78%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 841 ATATTGCTAGTTGGCACAAAACTTCAAATGATCATAACAGAAATGGGAGTAAGGATTTCA 900 ||||| |||| || ||||| || ||| |||| |||||| ||||||| |||||| |||| Sbjct 4791047 ATATTATTAGTAGGGACAAAGCTACAAGTGATAATAACAAAAATGGGGCTAAGGA-TTCA 4791105 Query 901 -GAAAGGGGAGACATAGTAAAAGGTGTACCTGTGGTGGAGACTGGTGACCATCTTTTCTG 959 ||||| ||||| |||||||||| ||||||||||| || | || || || ||||| || Sbjct 4791106 TGAAAGAGGAGAAGTAGTAAAAGGGGTACCTGTGGTTCAGCCAGGAGATCACCTTTTTTG 4791165 Query 960 GTTTAATCGCCCT-GCC-CTTGTCCTATTCTTGATTAACTTTGTACTCTTTCAG 1011 ||| || || ||| | | | | || | |||| ||||||||||| ||||||||| Sbjct 4791166 GTTCAACCGTCCTCGTCTCAT-TCTTTATCTT-ATTAACTTTGTTCTCTTTCAG 4791217 >SL2.50ch11 No definition line found Length=56302525 Score = 95.3 bits (51), Expect = 3e-17 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 841 ATATTGCTAGTTGGCACAAAACTTCAAATGATCATAACAGAAATGGGAGTAAGGATTTCA 900 ||||| |||| || || ||||| ||| |||| |||||| |||||||| |||| ||| | Sbjct 53860956 ATATTATTAGTAGGGACTAAACTACAAGTGATTATAACAAAAATGGGATTAAGAATTCAA 53861015 Query 901 GAAAGGGGAGACATAGTAAAAGGTGTACCTGTGGTGGAGACTGGTGACCATCTTTTCTGG 960 ||||||||||| |||| ||||| ||||||||||| | |||| || || | || ||| Sbjct 53861016 GAAAGGGGAGAAGTAGTGAAAGGGGTACCTGTGGTTCAACCTGGAGATGATTTATTTTGG 53861075 Query 961 TTTAATCGCCCTGCCCTTGTCCTATTCTTGATTAACTTTGTACTCTTTCAG 1011 |||||||| ||| || | || || || ||||| ||||| || |||||| Sbjct 53861076 TTTAATCGTCCTCGTCTACTACTTTTTTTAATTAATTTTGTTCTTTTTCAG 53861126 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 1231795777680 Database: Tomato genome chromosomes (build SL2.50) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 823,944,041 Number of sequences in database: 13 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5