TBLASTN 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: N.benthamiana Genome v1.0.1 predicted cDNA 57,140 sequences; 82,582,885 total letters Query= Untitled_sequence Length=231 Score E Sequences producing significant alignments: (Bits) Value Niben101Scf06369g03006.1sp|O23970|GPX1_HELAN *-** Glutathione per... 476 4e-171 Niben101Ctg15145g00003.1sp|O23970|GPX1_HELAN *-** Glutathione per... 245 1e-81 Niben101Scf05417g01007.1sp|O23970|GPX1_HELAN *-** Glutathione per... 237 6e-80 Niben101Scf01339g06015.1sp|O23970|GPX1_HELAN *-** Glutathione per... 232 2e-76 Niben101Scf00011g00020.1sp|O23970|GPX1_HELAN *-** Glutathione per... 219 7e-70 Niben101Scf02526g00002.1sp|O23970|GPX1_HELAN *-** Glutathione per... 216 2e-69 Niben101Scf04283g00013.1sp|O23970|GPX1_HELAN *-** Glutathione per... 172 8e-53 Niben101Scf17339g00003.1sp|O23970|GPX1_HELAN *-** Glutathione per... 169 4e-52 Niben101Scf05290g00010.1sp|O23970|GPX1_HELAN *-** Glutathione per... 161 1e-48 Niben101Scf11299g00004.1sp|O23970|GPX1_HELAN *-** Glutathione per... 130 6e-36 >Niben101Scf06369g03006.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029760 (Glutathione peroxidase conserved site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=1080 Score = 476 bits (1224), Expect = 4e-171, Method: Compositional matrix adjust. Identities = 231/231 (100%), Positives = 231/231 (100%), Gaps = 0/231 (0%) Frame = +2 Query 1 MLYSATRVLIPRKNLSFLRQFSSIIKPTHFNSVSIKPIQTVLSNSIVSAKRFELFCLRSD 60 MLYSATRVLIPRKNLSFLRQFSSIIKPTHFNSVSIKPIQTVLSNSIVSAKRFELFCLRSD Sbjct 71 MLYSATRVLIPRKNLSFLRQFSSIIKPTHFNSVSIKPIQTVLSNSIVSAKRFELFCLRSD 250 Query 61 YSTMASQSSKPQSIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASHGLTNSNYTDMTEIYK 120 YSTMASQSSKPQSIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASHGLTNSNYTDMTEIYK Sbjct 251 YSTMASQSSKPQSIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASHGLTNSNYTDMTEIYK 430 Query 121 KYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFL 180 KYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFL Sbjct 431 KYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFL 610 Query 181 KSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTAPASMEKDIKKLLGVA 231 KSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTAPASMEKDIKKLLGVA Sbjct 611 KSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTAPASMEKDIKKLLGVA 763 >Niben101Ctg15145g00003.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=798 Score = 245 bits (626), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 115/172 (67%), Positives = 145/172 (84%), Gaps = 2/172 (1%) Frame = +1 Query 62 STMASQ-SSKPQSIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASH-GLTNSNYTDMTEIY 119 S MASQ KP+S++DFTVKD+KGN ++LS YKGKVL+IVNVAS G+TNSNY ++ ++Y Sbjct 130 SPMASQLEKKPESVHDFTVKDSKGNYIDLSSYKGKVLLIVNVASKCGMTNSNYKELNQLY 309 Query 120 KKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKF 179 +KYKDQGLEILAFPCNQFG +EPGS ++I + VCTRFK+E+PIFDK++VNG+NA+PLYK Sbjct 310 EKYKDQGLEILAFPCNQFGEEEPGSNDQILDFVCTRFKSEFPIFDKIEVNGENASPLYKL 489 Query 180 LKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTAPASMEKDIKKLLGVA 231 LKS K G FGD I+WNF+KFLVDK G DRY PTT+P ++E+DIKKLL + Sbjct 490 LKSGKWGIFGDDIQWNFAKFLVDKNGQAADRYYPTTSPLTIERDIKKLLEIV 645 >Niben101Scf05417g01007.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=478 Score = 237 bits (605), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 118/128 (92%), Positives = 124/128 (97%), Gaps = 1/128 (1%) Frame = +2 Query 1 MLYSATRVLIPRKNLSFLRQFSSIIKPTHFNSVSIKPIQTVLSNSIVSAKRFELFCLRSD 60 MLYS TRVLIPRKNL+FLRQFSSI+KPTHFNSVSI+PIQTVLSNS VSAKRFELFCLRSD Sbjct 53 MLYSVTRVLIPRKNLNFLRQFSSILKPTHFNSVSIQPIQTVLSNSFVSAKRFELFCLRSD 232 Query 61 YSTMASQSSKPQSIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASH-GLTNSNYTDMTEIY 119 YSTMASQSSKPQSIYDFTVKDAKGNDV+LSIYKGKVLIIVNVAS GLTNSNYT++TEIY Sbjct 233 YSTMASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTELTEIY 412 Query 120 KKYKDQGL 127 KKYKDQGL Sbjct 413 KKYKDQGL 436 >Niben101Scf01339g06015.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=818 Score = 232 bits (592), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 113/164 (69%), Positives = 134/164 (82%), Gaps = 3/164 (2%) Frame = +1 Query 59 SDYSTMASQSSKPQSIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASH-GLTNSNYTDMTE 117 S TMA S P+SIYDFTVKD GN+V LS Y+GKVL+IVNVAS GLT+SNY ++ Sbjct 205 SSPQTMAEGS--PKSIYDFTVKDILGNEVPLSNYRGKVLLIVNVASKCGLTDSNYKELNI 378 Query 118 IYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLY 177 +Y+KYKDQG EILAFPCNQF QEPG+ EEIQ VCTRFKAE+P+F+KVDVNGDNAAPL+ Sbjct 379 LYEKYKDQGFEILAFPCNQFLWQEPGTNEEIQETVCTRFKAEFPVFEKVDVNGDNAAPLF 558 Query 178 KFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTAPASME 221 KFLKS KGGF G++IKWNF+KFLV+KEG +V+RY+P T P E Sbjct 559 KFLKSEKGGFLGNAIKWNFTKFLVNKEGKIVERYAPRTPPLQFE 690 >Niben101Scf00011g00020.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=1170 Score = 219 bits (559), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 102/167 (61%), Positives = 131/167 (78%), Gaps = 2/167 (1%) Frame = +1 Query 64 MASQSSKPQ-SIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASH-GLTNSNYTDMTEIYKK 121 M + S PQ SI++FTVKD KG DV+LS+YKG VL++VNVAS G T++NYT +T++Y + Sbjct 202 MGASKSVPQKSIHEFTVKDIKGKDVDLSMYKGNVLLVVNVASKCGFTSTNYTQLTQLYNQ 381 Query 122 YKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLK 181 Y+D+G E+LAFPCNQF QEPG+ +E Q CTRF+AEYPIF KV VNG + AP+YKFLK Sbjct 382 YRDKGFEVLAFPCNQFLKQEPGTSQEAQQFACTRFQAEYPIFQKVRVNGPDTAPVYKFLK 561 Query 182 SSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTAPASMEKDIKKLL 228 +SKGGF G IKWNF+KFLVDK+G V+ RY TT P S++ DI+K + Sbjct 562 ASKGGFLGSRIKWNFTKFLVDKDGKVIRRYGSTTPPLSIKADIEKAI 702 >Niben101Scf02526g00002.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=897 Score = 216 bits (549), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 106/173 (61%), Positives = 125/173 (72%), Gaps = 22/173 (13%) Frame = +1 Query 79 VKDAKGNDVNLSIYKGKVLIIVNVASH-GLTNSNYTDMTEIYKKYKDQ------------ 125 V+D G DV LS +KGKVL+IVNVAS GLT SNYT+++++Y+KYK + Sbjct 28 VQDIDGKDVPLSTFKGKVLLIVNVASRCGLTTSNYTELSQVYEKYKTKVMVIIFFTVQSH 207 Query 126 ---------GLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPL 176 GLEILAFPCNQFG QEPGS EI+ CTRFKAE+PIFDKVDVNG N AP+ Sbjct 208 AKSISVFLPGLEILAFPCNQFGAQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPNTAPV 387 Query 177 YKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTAPASMEKDIKKLLG 229 Y+FLKSS GGF GD +KWNF KFLVDK G VV+RY PTT+P +EKDI+KLL Sbjct 388 YQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVVERYPPTTSPVQIEKDIQKLLA 546 >Niben101Scf04283g00013.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029760 (Glutathione peroxidase conserved site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=853 Score = 172 bits (437), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 88/169 (52%), Positives = 109/169 (64%), Gaps = 30/169 (18%) Frame = +2 Query 61 YSTMASQSSKPQ-SIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASHGLTNSNYTDMTEIY 119 ++ M + S PQ SI++FTVKD KG DV+LS+YKGKVL++V Sbjct 14 FTKMGASKSVPQKSIHEFTVKDIKGKDVDLSMYKGKVLLVV------------------- 136 Query 120 KKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKF 179 LAFPCNQF QEPG+ +E Q CTRF+AEYPIF KV VNG + AP YKF Sbjct 137 ----------LAFPCNQFLKQEPGTSQEAQEFACTRFQAEYPIFQKVRVNGPDTAPAYKF 286 Query 180 LKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTAPASMEKDIKKLL 228 LK+SKGGF G IKWNF+KFLVDK+G V+ RY TT P S++ DI+K + Sbjct 287 LKASKGGFLGSRIKWNFTKFLVDKDGKVIRRYGSTTPPLSIKADIEKAI 433 >Niben101Scf17339g00003.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=732 Score = 169 bits (429), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 80/113 (71%), Positives = 94/113 (83%), Gaps = 1/113 (1%) Frame = +1 Query 79 VKDAKGNDVNLSIYKGKVLIIVNVASH-GLTNSNYTDMTEIYKKYKDQGLEILAFPCNQF 137 V+D G DV LS +KGKVL+IVNVAS GLT SNYT+++++Y+KYK +GLEILAFPCNQF Sbjct 28 VQDIDGKDVPLSTFKGKVLLIVNVASRCGLTTSNYTELSQVYEKYKTKGLEILAFPCNQF 207 Query 138 GGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGD 190 G QEPGS EI+ CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD Sbjct 208 GAQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 366 >Niben101Scf05290g00010.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029760 (Glutathione peroxidase conserved site) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=797 Score = 161 bits (408), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 71/111 (64%), Positives = 87/111 (78%), Gaps = 0/111 (0%) Frame = +1 Query 103 ASHGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPI 162 ++ G TNSNY +TE+Y KYKD+G E+LAFPCNQF QEPG+ EE Q CTRF+AEYPI Sbjct 16 SNSGFTNSNYIQLTELYNKYKDKGFEVLAFPCNQFLKQEPGTSEEAQQFACTRFRAEYPI 195 Query 163 FDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSP 213 F V VNG +AAP+Y+FLKSSKGGF G SIKWNF+KFL+D+EG + +P Sbjct 196 FQNVRVNGPDAAPVYQFLKSSKGGFLGSSIKWNFTKFLIDEEGKLSSVMAP 348 >Niben101Scf11299g00004.1 sp|O23970|GPX1_HELAN *-** Glutathione peroxidase 1 IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold) GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process) Length=1109 Score = 130 bits (328), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/152 (48%), Positives = 87/152 (57%), Gaps = 39/152 (26%) Frame = +3 Query 64 MASQSSKPQ-SIYDFTVKDAKGNDVNLSIYKGKVLIIVNVASHGLTNSNYTDMTEIYKKY 122 M + SS PQ SI++FTVKD KG DV+L+IY GKVL++VN Sbjct 366 MGASSSVPQKSIHEFTVKDCKGKDVDLNIYNGKVLLVVN--------------------- 482 Query 123 KDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKS 182 QEPG+ EE Q CTRFKAEYPIF KV VNG +AAP+Y+FLKS Sbjct 483 -----------------QEPGTSEEAQQFACTRFKAEYPIFQKVRVNGPDAAPVYQFLKS 611 Query 183 SKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPT 214 SKGGF G SIKWNF+K + K +R S T Sbjct 612 SKGGFLGSSIKWNFTKQISKKH*GKCERLSST 707 Lambda K H a alpha 0.318 0.134 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2799215892 Database: N.benthamiana Genome v1.0.1 predicted cDNA Posted date: Mar 21, 2024 4:04 PM Number of letters in database: 82,582,885 Number of sequences in database: 57,140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40