BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: eggplant_cds_r2.5.1
           42,035 sequences; 36,732,556 total letters



Query= AT1G72830.1

Length=1023
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Sme2.5_00007.1_g00031.1                                               76.8    3e-13


>Sme2.5_00007.1_g00031.1 
Length=3087

 Score = 76.8 bits (41),  Expect = 3e-13
 Identities = 98/126 (78%), Gaps = 2/126 (2%)
 Strand=Plus/Plus

Query  544   TTTGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAGCTT  603
             ||||||||||| || || || || || ||  | ||  | |||||| | ||||||| ||| 
Sbjct  2638  TTTGTCAATGCAAAACAGTATCAAGCTATCCTCAGACGTAGACAGTACCGTGCTAGGCTG  2697

Query  604   GAGGCTCAAAACAAACTAATC-AGAGCCCGTAAGCCCTATCTTCATGAGTCTCGACATGT  662
             |||||||||||||||||  || | || ||| ||||| ||||| |||||||| || |||  
Sbjct  2698  GAGGCTCAAAACAAACTC-TCTAAAGGCCGGAAGCCATATCTCCATGAGTCCCGGCATCG  2756

Query  663   TCATGC  668
             ||||||
Sbjct  2757  TCATGC  2762



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 35610317638


  Database: eggplant_cds_r2.5.1
    Posted date:  Feb 21, 2025  12:09 PM
  Number of letters in database: 36,732,556
  Number of sequences in database:  42,035



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5