BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch03                                                             579     1e-163


>SL4.0ch03 
Length=65298490

 Score = 579 bits (313),  Expect = 1e-163
 Identities = 313/313 (100%), Gaps = 0/313 (0%)
 Strand=Plus/Minus

Query  123       GGGAAGCATACCCAAATGCAGGAGACAATGGAGAAGTAGAAGGATCATCGCGGCAACAAC  182
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59120962  GGGAAGCATACCCAAATGCAGGAGACAATGGAGAAGTAGAAGGATCATCGCGGCAACAAC  59120903

Query  183       AACAAAACAGTGCTTCTGTGATGCCTCCATGGATGCTTCGCCATCTCAACGGTTAAATTA  242
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59120902  AACAAAACAGTGCTTCTGTGATGCCTCCATGGATGCTTCGCCATCTCAACGGTTAAATTA  59120843

Query  243       AAACTTAATGAAGTATAAAGCAAGCGGACAATATTATGTTATCTATTAATCACTAATAGT  302
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59120842  AAACTTAATGAAGTATAAAGCAAGCGGACAATATTATGTTATCTATTAATCACTAATAGT  59120783

Query  303       ATATGCACATATATTATATATATGTATGTTACATATTAGACAAACACAACTTTCATATCT  362
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59120782  ATATGCACATATATTATATATATGTATGTTACATATTAGACAAACACAACTTTCATATCT  59120723

Query  363       ACTTAATTGTGTATGGTGTATATATGGCTGTTGTGTAACAATATGCACAATATATTGTAG  422
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59120722  ACTTAATTGTGTATGGTGTATATATGGCTGTTGTGTAACAATATGCACAATATATTGTAG  59120663

Query  423       TAGTACCATATAT  435
                 |||||||||||||
Sbjct  59120662  TAGTACCATATAT  59120650


 Score = 220 bits (119),  Expect = 1e-55
 Identities = 119/119 (100%), Gaps = 0/119 (0%)
 Strand=Plus/Minus

Query  6         AGGTTAAGGAAAGGGAGAAAGAGATGGCCCAACAGACTCCGTGGGAGCAACAGAGTCATG  65
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59121194  AGGTTAAGGAAAGGGAGAAAGAGATGGCCCAACAGACTCCGTGGGAGCAACAGAGTCATG  59121135

Query  66        ATCATCTCAATTCATCTTCGTTTGTTTTGCCACACCCCTTTAACAATCTTCACATAGGG  124
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59121134  ATCATCTCAATTCATCTTCGTTTGTTTTGCCACACCCCTTTAACAATCTTCACATAGGG  59121076



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 318485505283


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5