BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Nitab v4.5 Genome Chromosomes Edwards2017 24 sequences; 2,924,271,002 total letters Query= Untitled_sequence Length=333 Score E Sequences producing significant alignments: (Bits) Value Nt02 137 3e-30 Nt10 126 6e-27 Nt09 84.2 4e-14 >Nt02 Length=109624155 Score = 137 bits (74), Expect = 3e-30 Identities = 148/184 (80%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 118 AGTTCATGCGTGTCGTCCGACGATTCCTCCGCCGTCCAACGTTATTCCGACAGCCCAGAA 177 || ||||| ||||||||||||||||| || || |||||| ||| || ||||||||||| Sbjct 54720649 AGCTCATGTGTGTCGTCCGACGATTCGTCGAGCGGCCAACGCTATGCCAACAGCCCAGAA 54720708 Query 178 ACAATTACTTCAATGGTGTTGGTTGGTTGTCCACGTTGTCTCATGTATGTTATGTTAGCA 237 ||| || || ||||| | || || |||||| | || || |||||||| ||| |||| Sbjct 54720709 ACAGCAACATCTATGGTTCTTGTGGGCTGTCCAAGGTGCCTTATGTATGTCATGCTAGCT 54720768 Query 238 GAAGTTAATGACCCAAGATGCCCTAAATGCAAGAGTACTTGTTTGCTTGATGTTATGTAT 297 |||| ||| ||||||||||| |||||||| || |||||||||||||||||||| ||| Sbjct 54720769 GAAG---CTGATCCAAGATGCCCCAAATGCAAAAGCACTTGTTTGCTTGATGTTATCTAT 54720825 Query 298 GAGA 301 |||| Sbjct 54720826 GAGA 54720829 >Nt10 Length=116194611 Score = 126 bits (68), Expect = 6e-27 Identities = 156/199 (78%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 118 AGTTCATGCGTGTCGTCCGACGATTCCTCCGCCGTCCAACGTTATTCCGACAGCCCAGAA 177 || ||||| ||||| || |||||||| || | || ||||| || || ||||||||||| Sbjct 43022223 AGCTCATGTGTGTCTTCGGACGATTCGTCGGGCGGTCAACGCTACGCCAACAGCCCAGAA 43022282 Query 178 ACAATTACTTCAATGGTGTTGGTTGGTTGTCCACGTTGTCTCATGTATGTTATGTTAGCA 237 ||| || || ||||| | || || |||||| | || || |||||||| ||| |||| Sbjct 43022283 ACAGCAACATCTATGGTTCTTGTGGGCTGTCCAAGGTGCCTTATGTATGTCATGCTAGCT 43022342 Query 238 GAAGTTAATGACCCAAGATGCCCTAAATGCAAGAGTACTTGTTTGCTTGATGTTATGTAT 297 |||| | || ||||||||||| |||||||| || |||||||||||||||||||| ||| Sbjct 43022343 GAAGCTGAT---CCAAGATGCCCCAAATGCAAAAGCACTTGTTTGCTTGATGTTATCTAT 43022399 Query 298 GAGAAGAACAAGACTACTA 316 |||| |||| ||||||| Sbjct 43022400 GAGACCAACACTACTACTA 43022418 >Nt09 Length=106147314 Score = 84.2 bits (45), Expect = 4e-14 Identities = 114/146 (78%), Gaps = 9/146 (6%) Strand=Plus/Plus Query 168 CAGCCCAGAAACAATTACTTCAATGGTGTTGGTTGGTTGTCCACGTTGTCTCATGTATGT 227 |||||||| | ||| ||||||||| || | || || || || | ||| | |||||||| Sbjct 79230335 CAGCCCAG--A-AATAACTTCAATGATGCTTGTGGGATGCCCTAGATGTTTAATGTATGT 79230391 Query 228 TATGTTAGCAGAAGTTAATGACCCAAGATGCCCTAAATGCAAGAGTACTTGTTTGCTTGA 287 ||||||| ||| | |||| |||| |||||||||||||||||||||| ||||||||| Sbjct 79230392 TATGTTATCAGT-GC--ATGAGCCAAAATGCCCTAAATGCAAGAGTACTGTTTTGCTTGA 79230448 Query 288 TGTTATGTATGAG-AA-GAA-CAAGA 310 | || | ||||| || ||| ||||| Sbjct 79230449 TTTTTTCCATGAGGAAAGAATCAAGA 79230474 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 888978173024 Database: Nitab v4.5 Genome Chromosomes Edwards2017 Posted date: Mar 21, 2024 4:11 PM Number of letters in database: 2,924,271,002 Number of sequences in database: 24 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5