BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Niben261_genome.fasta 17,639 sequences; 3,035,611,412 total letters Query= Untitled_sequence Length=696 Score E Sequences producing significant alignments: (Bits) Value Niben261Chr03 446 1e-122 Niben261Chr14 390 5e-106 Niben261Chr05 108 5e-21 >Niben261Chr03 Length=194605305 Score = 446 bits (241), Expect = 1e-122 Identities = 241/241 (100%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1 ATGCTTTATTCTGCAACTCGTGTTCTCATACCAAGAAAAAATCTCAGTTTCCTTAGGCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7597823 ATGCTTTATTCTGCAACTCGTGTTCTCATACCAAGAAAAAATCTCAGTTTCCTTAGGCAA 7597764 Query 61 TTTTCTTCGATTATAAAGCCAACCCATTTCAATTCTGTATCTATTAAGCCGATCCAAACA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7597763 TTTTCTTCGATTATAAAGCCAACCCATTTCAATTCTGTATCTATTAAGCCGATCCAAACA 7597704 Query 121 GTTCTTTCCAATTCTATTGTTTCCGCTAAGAGGTTTGAGTTGTTTTGTTTAAGATCAGAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7597703 GTTCTTTCCAATTCTATTGTTTCCGCTAAGAGGTTTGAGTTGTTTTGTTTAAGATCAGAT 7597644 Query 181 TATAGTACCATGGCCAGTCAATCCAGCAAGCCTCAATCTATTTACGATTTCACTGTCAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7597643 TATAGTACCATGGCCAGTCAATCCAGCAAGCCTCAATCTATTTACGATTTCACTGTCAAG 7597584 Query 241 G 241 | Sbjct 7597583 G 7597583 Score = 315 bits (170), Expect = 3e-83 Identities = 170/170 (100%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 494 AGGTTGACGTGAATGGTGATAATGCTGCTCCACTGTATAAGTTCTTGAAATCAAGCAAAG 553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7594895 AGGTTGACGTGAATGGTGATAATGCTGCTCCACTGTATAAGTTCTTGAAATCAAGCAAAG 7594836 Query 554 GTGGGTTCTTTGGAGATAGTATCAAGTGGAACTTCTCCAAATTCCTTGTTGACAAAGAAG 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7594835 GTGGGTTCTTTGGAGATAGTATCAAGTGGAACTTCTCCAAATTCCTTGTTGACAAAGAAG 7594776 Query 614 GAAACGTCGTTGATCGCTACTCTCCAACGACTGCTCCAGCTAGCATGGAG 663 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7594775 GAAACGTCGTTGATCGCTACTCTCCAACGACTGCTCCAGCTAGCATGGAG 7594726 Score = 231 bits (125), Expect = 3e-58 Identities = 125/125 (100%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 375 AGGTCTGGAGATTCTTGCATTCCCTTGCAACCAGTTTGGTGGGCAGGAACCTGGAAGCAT 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7595174 AGGTCTGGAGATTCTTGCATTCCCTTGCAACCAGTTTGGTGGGCAGGAACCTGGAAGCAT 7595115 Query 435 TGAAGAGATCCAGAACATGGTTTGCACTCGCTTCAAGGCTGAGTACCCCATATTTGATAA 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7595114 TGAAGAGATCCAGAACATGGTTTGCACTCGCTTCAAGGCTGAGTACCCCATATTTGATAA 7595055 Query 495 GGTTG 499 ||||| Sbjct 7595054 GGTTG 7595050 Score = 143 bits (77), Expect = 1e-31 Identities = 82/84 (98%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 239 AGGATGCTAAGGGTAATGATGTCAATCTCAGCATTTACAAGGGAAAGGTCCTTATTATTG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7596595 AGGATGCTAAGGGTAATGATGTCAATCTCAGCATTTACAAGGGAAAGGTCCTTATTATTG 7596536 Query 299 TCAATGTTGCATCACA-TGGTCTG 321 |||||||||||||||| |||| || Sbjct 7596535 TCAATGTTGCATCACAGTGGTATG 7596512 Score = 119 bits (64), Expect = 2e-24 Identities = 66/67 (99%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 315 TGGTCTGACAAATTCGAACTATACTGATATGACTGAGATATACAAGAAGTACAAGGATCA 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7595423 TGGTCTGACAAATTCGAACTATACTGATATGACTGAGATATACAAGAAGTACAAGGATCA 7595364 Query 375 AGGTCTG 381 |||| || Sbjct 7595363 AGGTTTG 7595357 >Niben261Chr14 Length=153778118 Score = 390 bits (211), Expect = 5e-106 Identities = 231/241 (96%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1 ATGCTTTATTCTGCAACTCGTGTTCTCATACCAAGAAAAAATCTCAGTTTCCTTAGGCAA 60 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 134838518 ATGCTTTATTCTGTAACTCGTGTTCTCATACCAAGAAAAAATCTCAATTTCCTTAGGCAA 134838459 Query 61 TTTTCTTCGATTATAAAGCCAACCCATTTCAATTCTGTATCTATTAAGCCGATCCAAACA 120 ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 134838458 TTTTCTTCGATCCTAAAACCAACCCATTTCAATTCTGTATCTATTCAGCCGATCCAAACA 134838399 Query 121 GTTCTTTCCAATTCTATTGTTTCCGCTAAGAGGTTTGAGTTGTTTTGTTTAAGATCAGAT 180 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 134838398 GTTCTTTCCAATTCTTTTGTTTCCGCTAAGAGATTTGAGTTGTTTTGTTTAAGATCAGAT 134838339 Query 181 TATAGTACCATGGCCAGTCAATCCAGCAAGCCTCAATCTATTTACGATTTCACTGTCAAG 240 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 134838338 TATAGTACCATGGCCAGTCAATCCAGCAAGCCTCAATCTATTTATGACTTCACTGTCAAG 134838279 Query 241 G 241 | Sbjct 134838278 G 134838278 Score = 200 bits (108), Expect = 9e-49 Identities = 116/120 (97%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 375 AGGTCTGGAGATTCTTGCATTCCCTTGCAACCAGTTTGGTGGGCAGGAACCTGGAAGCAT 434 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 134836068 AGGTCTGGAGATTCTTGCATTCCCTTGCAACCAGTTCGGTGGGCAGGAGCCTGGAAGCAT 134836009 Query 435 TGAAGAGATCCAGAACATGGTTTGCACTCGCTTCAAGGCTGAGTACCCCATATTTGATAA 494 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 134836008 TGAAGAGATCCAGAACATGGTTTGCACTCGCTTCAAGGCCGAATACCCCATATTTGATAA 134835949 Score = 126 bits (68), Expect = 1e-26 Identities = 79/84 (94%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 239 AGGATGCTAAGGGTAATGATGTCAATCTCAGCATTTACAAGGGAAAGGTCCTTATTATTG 298 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 134837206 AGGATGCTAAGGGTAATGATGTTGATCTCAGCATTTACAAGGGAAAGGTCCTTATCATTG 134837147 Query 299 TCAATGTTGCATCACA-TGGTCTG 321 |||||||||||||||| |||| || Sbjct 134837146 TCAATGTTGCATCACAGTGGTATG 134837123 Score = 93.5 bits (50), Expect = 1e-16 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 320 TGACAAATTCGAACTATACTGATATGACTGAGATATACAAGAAGTACAAGGATCAAGGTC 379 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 134836317 TGACAAATTCGAACTATACTGAATTGACCGAGATATACAAGAAGTACAAGGATCAAGGTT 134836258 Query 380 TG 381 || Sbjct 134836257 TG 134836256 >Niben261Chr05 Length=138451958 Score = 108 bits (58), Expect = 5e-21 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 494 AGGTTGACGTGAATGGTGATAATGCTGCTCCACTGTATAAGTTCTTGAAATCAAGCAAAG 553 ||||||| || || || |||||||| || ||||| | |||||||| |||||| |||| Sbjct 100378226 AGGTTGATGTAAACGGGGATAATGCAGCACCACTTTTCAAGTTCTTAAAATCAGAAAAAG 100378285 Query 554 GTGGGTTCTTTGGAGATAGTATCAAGTGGAACTTCTCCAAATTCCTTGTTGACAAAGAAG 613 | || ||| ||||| || ||| |||||||||||| |||||||||||||| ||||||||| Sbjct 100378286 GCGGTTTCCTTGGAAATGCTATTAAGTGGAACTTCACCAAATTCCTTGTTAACAAAGAAG 100378345 Query 614 GAAA 617 |||| Sbjct 100378346 GAAA 100378349 Score = 108 bits (58), Expect = 5e-21 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 494 AGGTTGACGTGAATGGTGATAATGCTGCTCCACTGTATAAGTTCTTGAAATCAAGCAAAG 553 ||||||| || || || |||||||| || ||||| | |||||||| |||||| |||| Sbjct 100380800 AGGTTGATGTAAACGGGGATAATGCAGCACCACTTTTCAAGTTCTTAAAATCAGAAAAAG 100380859 Query 554 GTGGGTTCTTTGGAGATAGTATCAAGTGGAACTTCTCCAAATTCCTTGTTGACAAAGAAG 613 | || ||| ||||| || ||| |||||||||||| |||||||||||||| ||||||||| Sbjct 100380860 GCGGTTTCCTTGGAAATGCTATTAAGTGGAACTTCACCAAATTCCTTGTTAACAAAGAAG 100380919 Query 614 GAAA 617 |||| Sbjct 100380920 GAAA 100380923 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2021364773172 Database: Niben261_genome.fasta Posted date: Jul 1, 2025 1:16 PM Number of letters in database: 3,035,611,412 Number of sequences in database: 17,639 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5