BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: N.benthamiana Genome v1.0.1 predicted proteins
           57,140 sequences; 18,711,326 total letters



Query= Untitled_sequence

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Niben101Scf02752g01013.1emb|CDY44792.1| *-*- BnaC02g00950D [Brass...  159     1e-51
Niben101Scf00082g07005.1emb|CDY44792.1| *-*- BnaC02g00950D [Brass...  155     8e-49


>Niben101Scf02752g01013.1 emb|CDY44792.1| *-*- BnaC02g00950D [Brassica napus]  
Length=113

 Score = 159 bits (403),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 93/113 (82%), Gaps = 3/113 (3%)

Query  26   MATQEKSEVIEPPTTVDKQSESYSYTTWAGKIQEQYQKVKENAETYPYVWGSYTVVYGGL  85
            M +QEKSE  + P   DKQ ESYSYT WA KIQ+QYQK+KENAETYPYVWGSY VVYGG 
Sbjct  1    MTSQEKSEGSQQPAATDKQLESYSYTNWADKIQQQYQKIKENAETYPYVWGSYIVVYGGY  60

Query  86   GLWFAYRWRRLRKTEDRVRVLQDRLRKLVQAE---ESTSSSVTKAPSSSDKST  135
            GLWFAYRWR+LRKTE+RVRVLQDRLRKLV AE    S+S++ +KAP SSD ST
Sbjct  61   GLWFAYRWRKLRKTENRVRVLQDRLRKLVDAEASTSSSSAATSKAPPSSDIST  113


>Niben101Scf00082g07005.1 emb|CDY44792.1| *-*- BnaC02g00950D [Brassica napus]  
Length=183

 Score = 155 bits (391),  Expect = 8e-49, Method: Compositional matrix adjust.
 Identities = 80/110 (73%), Positives = 88/110 (80%), Gaps = 3/110 (3%)

Query  30   EKSEVIEPPTTVDKQSESYSYTTWAGKIQEQYQKVKENAETYPYVWGSYTVVYGGLGLWF  89
            EKSE  + P   DKQ ESYSYT WA  IQ+QYQK+KENAETYPYVWGSY VVYGG GLWF
Sbjct  74   EKSEGSQQPAATDKQLESYSYTNWADNIQQQYQKIKENAETYPYVWGSYIVVYGGFGLWF  133

Query  90   AYRWRRLRKTEDRVRVLQDRLRKLVQAE---ESTSSSVTKAPSSSDKSTR  136
            AYRWR+LRKTE+RVRVLQDRLRKLV AE    S+S+   KAP SSD ST+
Sbjct  134  AYRWRKLRKTENRVRVLQDRLRKLVDAEASTSSSSAGTGKAPPSSDISTK  183


 Score = 119 bits (297),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 59/72 (82%), Gaps = 0/72 (0%)

Query  26  MATQEKSEVIEPPTTVDKQSESYSYTTWAGKIQEQYQKVKENAETYPYVWGSYTVVYGGL  85
           M +QEKSE  + P   DKQ ESYSYT WA  IQ+QYQK+KENAETYPYVWGSY VVYGG 
Sbjct  1   MTSQEKSEGSQQPAATDKQLESYSYTNWADNIQQQYQKIKENAETYPYVWGSYIVVYGGF  60

Query  86  GLWFAYRWRRLR  97
           GLWFAYRWR+LR
Sbjct  61  GLWFAYRWRKLR  72



Lambda      K        H        a         alpha
   0.309    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635044542


  Database: N.benthamiana Genome v1.0.1 predicted proteins
    Posted date:  Mar 21, 2024  4:04 PM
  Number of letters in database: 18,711,326
  Number of sequences in database:  57,140



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40