BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome cDNA (ITAG release 4.0)
           34,075 sequences; 44,419,890 total letters



Query= best_target_region_(1-300)

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc03g117860.3.1                                                    555     9e-158


>Solyc03g117860.3.1 
Length=886

 Score = 555 bits (300),  Expect = 9e-158
 Identities = 300/300 (100%), Gaps = 0/300 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTCTGCATTATCTGACATCAGATGCGAAATTGGCAGAGGAATTGCAGAAGCAATTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  51   ATGTCTCTGCATTATCTGACATCAGATGCGAAATTGGCAGAGGAATTGCAGAAGCAATTT  110

Query  61   GTTATTGCAGAGTCCTTACAAATTTTCGCAAGGTATGAAAGGGGGTTGATTGAGTCAGCT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  111  GTTATTGCAGAGTCCTTACAAATTTTCGCAAGGTATGAAAGGGGGTTGATTGAGTCAGCT  170

Query  121  ATTCCGAATCGAGAGAAATTATACTGTCCTTATAAAAAATGTGCAAAATTGCTGAGCCAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  171  ATTCCGAATCGAGAGAAATTATACTGTCCTTATAAAAAATGTGCAAAATTGCTGAGCCAT  230

Query  181  GATCCTGATGACGATGAAGAGATCGTTATGAAGGGGAAATGTCCTTGGTGCGCAGGACTG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  231  GATCCTGATGACGATGAAGAGATCGTTATGAAGGGGAAATGTCCTTGGTGCGCAGGACTG  290

Query  241  TTGTGCGCGCGGTGCAGAGTACCTTGGCACACTGGGCGTGACTGTCAACAGTTTCAGGAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  TTGTGCGCGCGGTGCAGAGTACCTTGGCACACTGGGCGTGACTGTCAACAGTTTCAGGAA  350



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 12034176840


  Database: Tomato Genome cDNA (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:18 PM
  Number of letters in database: 44,419,890
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5