ReleaseNotes
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FileDescription.txt: this file
ReleaseNotes.txt: release notes for v2.40 in txt format
ReleaseNotes.html: release notes for v2.40 in html format
stats_ch_240.pdf: various stats for the pseudomolecules
stats_sc_ct_240.pdf: various stats for the contigs and scaffolds

Sequence data
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S_lycopersicum_2.40ch.fasta: multi fasta files with the v2.40 tomato chromosomes (1 to 12 and chr 0)
S_lycopersicum_scaffolds.2.40.fa.gz: multi fasta files with the v2.40 scaffolds (gzipped)
S_lycopersicum_contigs.2.40.fa.gz: multi fasta files with the v2.40 contigs (gzipped)
S_lycopersicum_chromosomes_from_contigs.2.40.agp.gz: AGP file describing the contig order and orientation in the chromosomes (gzipped)
S_lycopersicum_chromosomes_from_scaffolds.2.40.agp.gz: AGP file describing the scaffold order and orientation in the chromosomes (gzipped)
S_lycopersicum_scaffolds_from_contigs.2.40.agp.gz: AGP file describing the contig order and orientation in the scaffolds (gzipped)

BAC integration
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BAC_integration_summary.pdf: summary of the BAC integration procedure
BAC_contig_members.txt: describes which individual BACs make up each BAC contig
BACs_integrated.txt: list of BAC contigs that were integrated into the assembly
BACs_not_integrated.txt: list of BAC contigs that could not be integrated into the assembly
* Note: only phase 2 and phase 3 BACs were considered for integration