##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C04SLm0098C07-pRCuc/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 126391, name = C04SLm0098C07.1) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	10711	11925	1	+	.	ID=g1
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	10711	11925	.	+	.	ID=g1.t1;Parent=g1
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	10711	10713	.	+	0	Parent=g1.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	10711	11925	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	11923	11925	.	+	0	Parent=g1.t1
# protein sequence = [MIEVQNGKRPLENNQEDEVVQRKLPKLSDARDGKEVVLASPHDQAGDQRHDEDTSSLIPSIGRDNSVSSLIHCSRSDF
# GAIASLNRSFRSLISSGELYRLRRQQGVVEHWVYFSCHLRQWEAFDPIRRRWMHLPSMNFNECFVFSDKESLAVGTELLVFGKEILSHVIYRYSLLTN
# SWSAGTEMNAPRCLFGSASSGEIAILAGGCDSQGNILSSAELYNSETGTWKTLPSMNKRRKMCSAVFMDKKFYVIGGIGGTESSNALLTCGEEYDLKT
# GKWTEISSMSPVRARGDMPATSEAPPLVAVVNNDLYAADYADMEVRKYDKKNKTWATIGRLPERAASMNGWGLAFRACGDRLIVIGGPRTMGEGHIEV
# NSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	13206	14220	1	-	.	ID=g2
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	13206	14220	.	-	.	ID=g2.t1;Parent=g2
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	13206	13208	.	-	0	Parent=g2.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	13206	13389	.	-	1	ID=g2.t1.cds;Parent=g2.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	14054	14220	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	14218	14220	.	-	0	Parent=g2.t1
# protein sequence = [MNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKTGMAKSIHHARVLIRQRHIRVGRQVVNVASFMVRVDSQKHID
# FSLTSPFGGGRPGRVKRKNQKSAAKKAAGGDGDEEDEE]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	18249	27363	1	+	.	ID=g3
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	18249	27363	.	+	.	ID=g3.t1;Parent=g3
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	18249	18251	.	+	0	Parent=g3.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	18249	20130	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	26048	26132	.	+	2	ID=g3.t1.cds;Parent=g3.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	27216	27363	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	27361	27363	.	+	0	Parent=g3.t1
# protein sequence = [MFGTTTILPLPAPPLDGNLGPTPPAQVVEEPEDDRMEENEEDNNKGNKVPTSVATHTRTIGIIYPPPDIRSIVDKTSQ
# FVAKNGPEFEKRIVLNNAGNAKFNFLNASDPYHAYYQHRLADARAQNQASGEQPTQPDDNEAAPAPPTADGAEATAKPDPSAQFRPVRKVLEPPEAEQ
# YTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFMFFTSLADAYSKVLMPPKGLTDKLQKSAADMTTVLERCLHRLE
# WERSQEQARQKAEDEIEQERVQMAMIDWHDFVVVETIDFADDEDQDLPPPMTLEEVIRRSKMPTLEEEEYVEPGKEVEMEMDEEEVQLVEEGMRAATL
# EENGDIKSAETMTISEEQDPPMRIVKNWKRPEERILAERDPTKYVVSPITGELIPINEMSEHMRISLIDPKYKEQKDRMFAKIKETTLAQDDEISRNI
# VGLARTRPDIFGTTEEEVSNAVKAEIEKKKEEPKQVIWDGHTGSIGRTANQAMSQNSDDQNDAANDARNLPGPQAPPPPRPGFPSIRPLPPPPGLALN
# IPRPPNTVQYSTPGVAAPPPPRPPMVNMIPQVRPPPPPMPQMPGQQNLMVNRPPMPPSMATSCIDICFELQEDDILREQIRIHGIDDKTDNAVKNRFT
# TICKKKAKHEAMAEENRVTLSDKLDTDRICDVSAKKLR]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	37276	44363	1	+	.	ID=g4
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	37276	44363	.	+	.	ID=g4.t1;Parent=g4
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	37276	37278	.	+	0	Parent=g4.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	37276	38059	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	43864	44363	.	+	2	ID=g4.t1.cds;Parent=g4.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	44361	44363	.	+	0	Parent=g4.t1
# protein sequence = [MTPNKRPKKLVDNGPDEASKVMTPNKRQKQLVDNGPNEASKVMTPNKRQKQLVDNGPDEASKVMAPNNRQKQLVDNGP
# DEAYLIGMQKFLDYAFGRTEELYEIRCPCVKCCYTTVGTRETIESHLKVYGIIQKYTLGVSGNDSPGAISEGRGKEQDVRSMRSLGASGNDVGSFHQN
# SLYSGQNMATPSNSTSSDATISDYSGESMPSHSTGTSSDPTTSTGQEMQRTNKHPLVHDKEQMQIEITSSPSTDQIIQDTLNVETSGTWDPSTKSTQI
# IIHLSDIMFYEKLHHAISQLLMDKFEDQQHVIVEETIRKLQGIDITSEMSEVCVDVDLQIDHCCDGRILSALEESSSVDGMVPASESSIELLEPMEAD
# ERNSNDECLICLDELGEETDVLRLPCSHMFHAECITKWLQNSHYCPLCRFEMPTD]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	55501	55947	1	+	.	ID=g5
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	55501	55947	.	+	.	ID=g5.t1;Parent=g5
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	55501	55503	.	+	0	Parent=g5.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	55501	55947	.	+	0	ID=g5.t1.cds;Parent=g5.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	55945	55947	.	+	0	Parent=g5.t1
# protein sequence = [MLYEKLDQALSQVFMQFKDEFEDQKHAIVEQTTRKLLSITTTEMSEVCVDVELRIDHCCDGRILSALEESSSVDGMVP
# ASESSIELLEPMEADERNSNDECLVCLDELGEETDVLRLPCSHMFHAECITKWLQNSHYCPLCRFEMPTD]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	58645	59874	1	+	.	ID=g6
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	58645	59874	.	+	.	ID=g6.t1;Parent=g6
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	58645	58647	.	+	0	Parent=g6.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	58645	59874	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	59872	59874	.	+	0	Parent=g6.t1
# protein sequence = [MLRNGEEEVVLDVFKKMLLDEEPNEVTLVLVLSATANLKNVKFGRQVHGLIVKIELQSRTMVGTALLDMYSKCCCWLC
# AYEIFKELGGNRNLITWNSMIAGMMLNEQTEKAVELLVELESEGLEPDSATWNSMITGFSLLRKENEALKFFRKMLSAGVVPSVKTVTSLLMVCSSLS
# SLRFGQEIHAYIFRTENINDEFIVTAIIDMYMKCGQFPLARKVFDQLEVKYDDPAIWNVMISGYGRNGEGEAAFEIFCLMLMEKVQPNSATLNCMLSV
# CSHIGKLEKAWQVFRLMITDFGLIPTLKQLNIMVDLLARSGRLDEARELLQLIPEPSASVFASLLAASEQFSNAKMGEEMTQKLSELEPENPVPFVIL
# SNLYARQGRWDDAERIRETIDERGLDKLPGYSTVGVT]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	62723	64234	1	+	.	ID=g7
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	62723	64234	.	+	.	ID=g7.t1;Parent=g7
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	62723	62725	.	+	0	Parent=g7.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	62723	64234	.	+	0	ID=g7.t1.cds;Parent=g7.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	64232	64234	.	+	0	Parent=g7.t1
# protein sequence = [MHMQLLYNNKVIIFDRTDFGASNLSLPQGKCRFDDEVLDVDCSAHSVLYDILSNTYRPLMVQTDVWCSSGALNSDGTL
# IQTGGYHTGDRKIRLFSPCDGDCDWTELPQNLTVQRWYASDHILPDGRVIIVGGRKAFSYEFFPKTMDENGGGFQLPFLVETTDPIEENNLYPFLYIL
# PNGNLYIFSNQRSIELDYVNHNVLREFPMIPGEKRSYPATGSSVMLPLRLRQGQEPVVEVMICGGAWGGAYVKALEGEFWRGSSSCGRMRITDPDPKW
# VMEEMPLGRVMPDMLLLPTGNVLILNGAANGAAGWENAIDPVLNPVLYRPDEPDPRRRFTVLTPTKIARMYHSSAILLPDGRILVGGSNPHATYNFTG
# VKYPTELSLEAFSPPYLATQYAHLRPLNQAIDVGQVISYDQQFSITFTLPFPQPDAEFMVSMIPPSFTTHSFGMNQRLLFLEIVRVERFFMFGYRVIV
# FAPPTRNVAPPGYYMVFVVHQGVPSHSVWVKIQ]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	66768	67326	1	-	.	ID=g8
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	66768	67326	.	-	.	ID=g8.t1;Parent=g8
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	66768	66770	.	-	0	Parent=g8.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	66768	66797	.	-	0	ID=g8.t1.cds;Parent=g8.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	66883	67326	.	-	0	ID=g8.t1.cds;Parent=g8.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	67324	67326	.	-	0	Parent=g8.t1
# protein sequence = [MVNSCAWTNSSSVIASLGSSPSTIPVLSNEDEEISRNNKHIVESKSLRFLNRAAVKKPAAASGVLQCSVQEVEEVKIV
# VKILPIFGCTIMLNCCLAQLSTFSVQQAATMNTKFGKLKVPPASLPIFPVLFIMILAPIFDYFIIPFARKLSLKSNGRE]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	81473	89391	1	+	.	ID=g9
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	81473	89391	.	+	.	ID=g9.t1;Parent=g9
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	81473	81475	.	+	0	Parent=g9.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	81473	81859	.	+	0	ID=g9.t1.cds;Parent=g9.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	89263	89391	.	+	0	ID=g9.t1.cds;Parent=g9.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	89389	89391	.	+	0	Parent=g9.t1
# protein sequence = [MVNFDQDRVQKSKKRSFLAQLDQDDSSSNDDNYNYHHQSEKKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQ
# PRQVAIWFQNRRARCKTKQIEKDYDVLKASFDELKTQYDCLFKENGSLRNEIVIDFTASWCGPCRHMEPVINDFASTYTDVVFIKIDVDELDV]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	93789	94262	1	-	.	ID=g10
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	93789	94262	.	-	.	ID=g10.t1;Parent=g10
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	93789	93791	.	-	0	Parent=g10.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	93789	94262	.	-	0	ID=g10.t1.cds;Parent=g10.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	94260	94262	.	-	0	Parent=g10.t1
# protein sequence = [MSVDYYKTLKVSRNASEEDLKKSYKRLAMKWHPDKNSENKKEAEAKFKQISEAYDVLSDPQKRQIYDIYGDEALKSGQ
# FDPSSPSDRRGFKFNSRDAEDIFAEFFGGSDGYSRSTGGTVRIRKAAPVENKLPCTLEELYKGSKRKMKISRIVLDGAG]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	98480	111647	1	+	.	ID=g11
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	98480	111647	.	+	.	ID=g11.t1;Parent=g11
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	98480	98482	.	+	0	Parent=g11.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	98480	98668	.	+	0	ID=g11.t1.cds;Parent=g11.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	106058	106304	.	+	0	ID=g11.t1.cds;Parent=g11.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	108833	108878	.	+	2	ID=g11.t1.cds;Parent=g11.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	109317	109852	.	+	1	ID=g11.t1.cds;Parent=g11.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	110551	111161	.	+	2	ID=g11.t1.cds;Parent=g11.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	111254	111390	.	+	0	ID=g11.t1.cds;Parent=g11.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	111509	111647	.	+	1	ID=g11.t1.cds;Parent=g11.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	111645	111647	.	+	0	Parent=g11.t1
# protein sequence = [MQHQVMIEAVENHMPEVIIIDEISTESEVHACRTIAERGVMLIGTAHGEQLENIIKNPTLSDLEGYIVPPKPEVKAVT
# TNKLPKPIIFHDGRLVQKPTPLMSLIILLWIPIGFILACLRIAAGSLLPMPIVYYAFWALGVRVIIKEEMRKSVYANYAAFIRTSREISNLEGQLIAL
# RNLLSTRAAIVHGLAEGINVDSLASSDGSTQDDRSNNGDNDSINTESWLGQFIEKLEVLLAERRVDEVLDVLDEGEHMANDTHNKQTLTPSALLSLQK
# VITEQKQKLAAQLAEASFKSSVGGAELRSAVQALKRLGDGPRAHTLMLSSHQQKLHGNMQGIRPSGMLVKALPGSVDNENLEGSVNRIVRLAETEPQQ
# IALLANAILLSDELIPRAAAKLSSAQQSNKTDDTSKRSTDRQSRPIEQRELKRRLQRLVDQLRDSFCRQHALELIFLEDGGVRLSPDMYLNMEGSPEE
# IEWFPSPVYQEMFEKLTRIASIASDMFVGRERFATILLMRLTETIILWLSEDQNFWEEIEQGPKPLGPLGLQQFYLDMEFVILFASQGRYLSRNLQQV
# IKNIIGRAIEAVAASHIDPYSVLPEDDWFAEVAQIAIDMLTGKTQVGAMENVNSPTASSVLSHGSN]
###
###
C04SLm0098C07.1	AUGUSTUS_ab_initio	gene	113001	116596	1	-	.	ID=g12
C04SLm0098C07.1	AUGUSTUS_ab_initio	transcript	113001	116596	.	-	.	ID=g12.t1;Parent=g12
C04SLm0098C07.1	AUGUSTUS_ab_initio	stop_codon	113001	113003	.	-	0	Parent=g12.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	113001	113138	.	-	0	ID=g12.t1.cds;Parent=g12.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	113479	113673	.	-	0	ID=g12.t1.cds;Parent=g12.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	114011	114139	.	-	0	ID=g12.t1.cds;Parent=g12.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	114461	114623	.	-	1	ID=g12.t1.cds;Parent=g12.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	CDS	116565	116596	.	-	0	ID=g12.t1.cds;Parent=g12.t1
C04SLm0098C07.1	AUGUSTUS_ab_initio	start_codon	116594	116596	.	-	0	Parent=g12.t1
# protein sequence = [MERWKSLCHSTDKKKEFAANNAAYYPFGVDVFLSQRKIDHIAQLVELPVIEHSGTLPPILVVNIQVPLYPTAIFQGET
# DGKGMSFVLYFKLSESYAKELPSYFQENIRRVMDDEVEKVKAFPMDGTVPFRERLKILGRVANMEDLRLSAAERKLMQAYNEKPVLSRPQHEFYKLQV
# IIHFSNQGNKIEELPEQILCCIRLNEIDYVNYQQLGANNETP]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C04SLm0098C07-pRCuc/AUGUSTUS_ab_initio/seq_with_defline_removed