psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 2686 3 0 0 0 0 0 0 + SGN-E744672 2689 0 2689 C04HBa0008K13.1 117382 82840 85529 1 2689, 0, 82840, 37 0 0 0 0 0 1 447 + SGN-E553890 704 0 37 C04HBa0008K13.1 117382 70388 70872 2 25,12, 0,25, 70388,70860, 454 0 0 0 0 0 2 2569 - SGN-E555035 605 0 454 C04HBa0008K13.1 117382 50995 54018 3 344,41,69, 151,495,536, 50995,53823,53949, 43 0 0 0 1 5 3 119 - SGN-E687713 733 675 723 C04HBa0008K13.1 117382 70389 70551 4 19,11,7,6, 10,29,45,52, 70389,70519,70532,70545, 89 3 0 0 1 1 0 0 + SGN-E689199 815 37 130 C04HBa0008K13.1 117382 22055 22147 2 4,88, 37,42, 22055,22059, 641 6 0 0 0 0 1 156 - SGN-E689408 655 8 655 C04HBa0008K13.1 117382 7445 8248 2 548,99, 0,548, 7445,8149, 778 4 0 0 0 0 0 0 + SGN-E552089 782 0 782 C04HBa0008K13.1 117382 84482 85264 1 782, 0, 84482, 849 3 0 0 0 0 0 0 + SGN-E552092 852 0 852 C04HBa0008K13.1 117382 84482 85334 1 852, 0, 84482, 274 16 0 0 1 4 4 42 - SGN-E204223 580 286 580 C04HBa0008K13.1 117382 68587 68919 5 33,39,169,24,25, 0,37,76,245,269, 68587,68621,68664,68861,68894, 38 1 0 0 0 0 0 0 - SGN-E204092 457 414 453 C04HBa0008K13.1 117382 68874 68913 1 39, 4, 68874, 466 1 0 0 0 0 0 0 + SGN-E207671 467 0 467 C04HBa0008K13.1 117382 73338 73805 1 467, 0, 73338, 499 0 0 0 0 0 2 5148 + SGN-E200951 499 0 499 C04HBa0008K13.1 117382 95881 101528 3 172,184,143, 0,172,356, 95881,96566,101385, 31 0 0 0 0 0 0 0 - SGN-E211649 401 359 390 C04HBa0008K13.1 117382 31972 32003 1 31, 11, 31972, 676 2 0 1 1 1 2 4562 + SGN-E211347 680 0 680 C04HBa0008K13.1 117382 96566 101807 4 184,73,416,6, 0,184,257,674, 96566,99719,101385,101801, 60 2 0 0 0 0 1 3 - SGN-E577899 392 0 62 C04HBa0008K13.1 117382 68777 68842 2 5,57, 330,335, 68777,68785, 101 6 0 0 1 1 0 0 + SGN-E577960 387 279 387 C04HBa0008K13.1 117382 68505 68612 2 50,57, 279,330, 68505,68555, 242 17 0 0 0 0 1 9 - SGN-E578392 506 247 506 C04HBa0008K13.1 117382 68663 68931 2 251,8, 0,251, 68663,68923, 145 9 0 0 0 0 0 0 - SGN-E321116 219 0 154 C04HBa0008K13.1 117382 77317 77471 1 154, 65, 77317, 692 1 0 0 0 0 3 2112 + SGN-E369105 708 0 693 C04HBa0008K13.1 117382 74109 76914 4 308,92,46,247, 0,308,400,446, 74109,74509,74720,76667, 726 4 0 0 0 0 0 0 + SGN-E369106 730 0 730 C04HBa0008K13.1 117382 73613 74343 1 730, 0, 73613, 646 8 0 0 0 0 2 16982 - SGN-E369188 664 0 654 C04HBa0008K13.1 117382 70389 88025 3 19,440,195, 10,29,469, 70389,86521,87830, 727 0 0 0 0 0 2 1992 - SGN-E369189 727 0 727 C04HBa0008K13.1 117382 86758 89477 3 203,396,128, 0,203,599, 86758,87830,89349, 186 3 0 0 1 1 0 0 - SGN-E368596 190 0 190 C04HBa0008K13.1 117382 87925 88114 2 10,179, 0,11, 87925,87935, 35 1 0 0 0 0 1 17 - SGN-E375562 660 615 651 C04HBa0008K13.1 117382 70389 70442 2 24,12, 9,33, 70389,70430, 33 1 0 0 0 0 0 0 + SGN-E376006 672 486 520 C04HBa0008K13.1 117382 65550 65584 1 34, 486, 65550, 249 17 0 0 0 0 3 41 - SGN-E374844 554 286 552 C04HBa0008K13.1 117382 68612 68919 4 48,169,24,25, 2,50,219,243, 68612,68664,68861,68894, 117 6 0 0 1 2 1 216 + SGN-E376754 662 533 658 C04HBa0008K13.1 117382 68510 68849 3 45,65,13, 533,580,645, 68510,68555,68836, 235 14 0 0 2 10 3 10 - SGN-E377238 484 0 259 C04HBa0008K13.1 117382 68507 68766 4 48,60,39,102, 225,279,343,382, 68507,68560,68621,68664, 84 6 0 0 0 0 1 20 + SGN-E377316 765 672 762 C04HBa0008K13.1 117382 68510 68620 2 29,61, 672,701, 68510,68559, 32 1 0 0 0 0 0 0 - SGN-E390456 706 648 681 C04HBa0008K13.1 117382 70389 70422 1 33, 25, 70389, 31 1 0 0 0 0 0 0 - SGN-E390465 603 546 578 C04HBa0008K13.1 117382 70389 70421 1 32, 25, 70389, 503 0 0 0 0 0 0 0 + SGN-E391684 503 0 503 C04HBa0008K13.1 117382 108950 109453 1 503, 0, 108950, 75 5 0 0 0 0 1 172 - SGN-E391901 346 266 346 C04HBa0008K13.1 117382 68660 68912 2 9,71, 0,9, 68660,68841, 42 0 0 0 0 0 1 211 - SGN-E394807 217 175 217 C04HBa0008K13.1 117382 68660 68913 2 10,32, 0,10, 68660,68881, 39 0 0 0 0 0 0 0 - SGN-E398336 459 416 455 C04HBa0008K13.1 117382 68874 68913 1 39, 4, 68874, 31 1 0 0 0 0 0 0 - SGN-E539568 526 472 504 C04HBa0008K13.1 117382 65549 65581 1 32, 22, 65549, 31 1 0 0 0 0 0 0 - SGN-E539570 527 472 504 C04HBa0008K13.1 117382 65549 65581 1 32, 23, 65549, 44 3 0 0 0 0 0 0 - SGN-E539689 796 18 65 C04HBa0008K13.1 117382 20072 20119 1 47, 731, 20072, 33 2 0 0 0 0 0 0 + SGN-E542909 358 306 341 C04HBa0008K13.1 117382 29498 29533 1 35, 306, 29498, 157 0 0 0 0 0 0 0 + SGN-E544094 191 0 157 C04HBa0008K13.1 117382 85371 85528 1 157, 0, 85371, 85 4 0 0 0 0 0 0 + SGN-E546063 812 695 784 C04HBa0008K13.1 117382 68763 68852 1 89, 695, 68763, 55 2 0 0 1 1 0 0 - SGN-E547334 453 374 432 C04HBa0008K13.1 117382 68862 68919 2 4,53, 21,26, 68862,68866, 55 2 0 0 1 1 0 0 - SGN-E547335 453 374 432 C04HBa0008K13.1 117382 68862 68919 2 4,53, 21,26, 68862,68866, 678 0 0 0 1 1 0 0 - SGN-E549727 679 0 679 C04HBa0008K13.1 117382 6735 7413 2 580,98, 0,581, 6735,7315, 235 14 0 0 2 10 3 10 - SGN-E233594 310 0 259 C04HBa0008K13.1 117382 68507 68766 4 48,60,39,102, 51,105,169,208, 68507,68560,68621,68664, 235 14 0 0 2 10 3 10 - SGN-E233735 514 0 259 C04HBa0008K13.1 117382 68507 68766 4 48,60,39,102, 255,309,373,412, 68507,68560,68621,68664, 219 11 0 0 2 10 3 10 - SGN-E237992 666 18 258 C04HBa0008K13.1 117382 68507 68747 4 48,60,39,83, 408,462,526,565, 68507,68560,68621,68664, 235 14 0 0 2 10 3 10 - SGN-E240879 434 0 259 C04HBa0008K13.1 117382 68507 68766 4 48,60,39,102, 175,229,293,332, 68507,68560,68621,68664, 235 14 0 0 2 10 3 10 - SGN-E242674 528 0 259 C04HBa0008K13.1 117382 68507 68766 4 48,60,39,102, 269,323,387,426, 68507,68560,68621,68664, 391 2 0 0 0 0 0 0 + SGN-E243659 393 0 393 C04HBa0008K13.1 117382 73613 74006 1 393, 0, 73613, 417 0 0 0 0 0 0 0 - SGN-E243876 417 0 417 C04HBa0008K13.1 117382 6995 7412 1 417, 0, 6995, 235 14 0 0 2 10 3 10 - SGN-E233074 643 0 259 C04HBa0008K13.1 117382 68507 68766 4 48,60,39,102, 384,438,502,541, 68507,68560,68621,68664, 737 2 0 0 0 0 4 2809 + SGN-E719239 739 0 739 C04HBa0008K13.1 117382 73374 76922 5 243,103,92,46,255, 0,243,346,438,484, 73374,74314,74509,74720,76667, 476 3 0 0 0 0 2 2569 - SGN-E718718 559 21 500 C04HBa0008K13.1 117382 51038 54086 3 301,41,137, 59,360,401, 51038,53823,53949, 42 0 0 0 0 0 0 0 - SGN-E719799 683 556 598 C04HBa0008K13.1 117382 68871 68913 1 42, 85, 68871, 386 1 0 0 0 0 2 2569 - SGN-E720110 519 29 416 C04HBa0008K13.1 117382 51034 53990 3 305,41,41, 103,408,449, 51034,53823,53949, 39 0 0 0 0 0 0 0 - SGN-E721929 648 556 595 C04HBa0008K13.1 117382 68874 68913 1 39, 53, 68874, 481 2 0 0 0 0 2 2569 - SGN-E723295 579 29 512 C04HBa0008K13.1 117382 51036 54088 3 303,41,139, 67,370,411, 51036,53823,53949, 514 4 0 0 0 0 3 2570 - SGN-E723617 519 1 519 C04HBa0008K13.1 117382 51000 54088 4 339,41,125,13, 0,339,380,505, 51000,53823,53949,54075, 523 1 0 0 0 0 2 2569 - SGN-E724008 636 1 525 C04HBa0008K13.1 117382 50995 54088 3 344,41,139, 111,455,496, 50995,53823,53949, 470 2 0 0 0 0 2 2569 - SGN-E732115 485 0 472 C04HBa0008K13.1 117382 51038 54079 3 301,41,130, 13,314,355, 51038,53823,53949, 502 0 0 0 0 0 2 2569 - SGN-E732271 511 0 502 C04HBa0008K13.1 117382 50995 54066 3 344,41,117, 9,353,394, 50995,53823,53949, 471 5 0 0 0 0 2 2569 - SGN-E732787 476 0 476 C04HBa0008K13.1 117382 51028 54073 3 311,41,124, 0,311,352, 51028,53823,53949, 455 2 0 0 0 0 2 2569 - SGN-E732856 467 0 457 C04HBa0008K13.1 117382 51036 54062 3 303,41,113, 10,313,354, 51036,53823,53949, 507 1 0 0 0 0 2 2569 - SGN-E734583 524 0 508 C04HBa0008K13.1 117382 50995 54072 3 344,41,123, 16,360,401, 50995,53823,53949, 510 3 0 0 0 0 0 0 + SGN-E734746 573 0 513 C04HBa0008K13.1 117382 85025 85538 1 513, 0, 85025, 807 4 0 0 0 0 2 2759 + SGN-E736054 833 22 833 C04HBa0008K13.1 117382 33697 37267 3 269,106,436, 22,291,397, 33697,34094,36831, 687 6 0 0 0 0 0 0 + SGN-E740312 693 0 693 C04HBa0008K13.1 117382 82988 83681 1 693, 0, 82988, 688 5 0 0 0 0 0 0 + SGN-E740714 693 0 693 C04HBa0008K13.1 117382 82988 83681 1 693, 0, 82988, 713 6 0 0 0 0 3 816 + SGN-E704892 719 0 719 C04HBa0008K13.1 117382 73055 74590 4 27,508,103,81, 0,27,535,638, 73055,73109,74314,74509, 741 5 0 0 1 1 3 2181 + SGN-E711000 757 10 757 C04HBa0008K13.1 117382 106223 109150 5 59,95,275,238,79, 10,69,164,439,678, 106223,106482,107653,108833,109071, 40 1 0 0 1 3 2 2 - SGN-E711057 520 318 362 C04HBa0008K13.1 117382 70378 70421 3 6,31,4, 158,167,198, 70378,70385,70417, 40 0 0 0 0 0 2 464 - SGN-E712571 583 450 490 C04HBa0008K13.1 117382 70389 70893 3 19,13,8, 93,112,125, 70389,70860,70885, 464 1 0 0 0 0 2 2569 - SGN-E712926 474 0 465 C04HBa0008K13.1 117382 51036 54070 3 303,41,121, 9,312,353, 51036,53823,53949, 452 3 0 0 0 0 2 2569 - SGN-E713575 620 0 455 C04HBa0008K13.1 117382 51012 54036 3 327,41,87, 165,492,533, 51012,53823,53949, 471 1 0 0 0 0 2 2569 - SGN-E714065 585 0 472 C04HBa0008K13.1 117382 51017 54058 3 322,41,109, 113,435,476, 51017,53823,53949, 452 2 0 0 0 0 2 2569 - SGN-E714318 465 0 454 C04HBa0008K13.1 117382 51057 54080 3 282,41,131, 11,293,334, 51057,53823,53949, 472 1 0 0 0 0 2 2569 - SGN-E714883 564 0 473 C04HBa0008K13.1 117382 51029 54071 3 310,41,122, 91,401,442, 51029,53823,53949, 428 1 0 0 0 0 2 2569 - SGN-E715045 674 0 429 C04HBa0008K13.1 117382 51038 54036 3 301,41,87, 245,546,587, 51038,53823,53949, 471 1 0 0 0 0 2 2569 - SGN-E715924 483 1 473 C04HBa0008K13.1 117382 51036 54077 3 303,41,128, 10,313,354, 51036,53823,53949, 557 0 0 0 0 0 2 1992 - SGN-E246266 557 0 557 C04HBa0008K13.1 117382 86928 89477 3 33,396,128, 0,33,429, 86928,87830,89349, 246 8 0 0 3 7 2 26 + SGN-E249253 618 357 618 C04HBa0008K13.1 117382 68510 68790 4 45,64,18,127, 357,403,468,491, 68510,68555,68621,68663, 307 10 0 0 2 2 3 21 + SGN-E253695 540 221 540 C04HBa0008K13.1 117382 68510 68848 5 45,64,18,4,186, 221,267,332,350,354, 68510,68555,68621,68656,68662, 55 2 0 0 1 1 0 0 - SGN-E256217 514 0 58 C04HBa0008K13.1 117382 68508 68565 2 47,10, 456,504, 68508,68555, 660 4 0 0 1 1 0 0 + SGN-E268434 665 0 665 C04HBa0008K13.1 117382 73109 73773 2 611,53, 0,612, 73109,73720, 472 0 0 0 0 0 0 0 + SGN-E269014 472 0 472 C04HBa0008K13.1 117382 108951 109423 1 472, 0, 108951, 271 9 0 0 1 21 1 20 - SGN-E220367 302 1 302 C04HBa0008K13.1 117382 51042 51342 2 15,265, 0,36, 51042,51077, 429 2 0 0 0 0 2 2569 - SGN-E216128 449 0 431 C04HBa0008K13.1 117382 51036 54036 3 303,41,87, 18,321,362, 51036,53823,53949, 224 1 0 0 1 1 0 0 - SGN-E216259 244 0 226 C04HBa0008K13.1 117382 51036 51261 2 99,126, 18,118, 51036,51135, 189 4 0 0 0 0 0 0 - SGN-E222478 210 8 201 C04HBa0008K13.1 117382 76873 77066 1 193, 9, 76873, 191 2 0 0 0 0 0 0 - SGN-E222569 210 8 201 C04HBa0008K13.1 117382 76873 77066 1 193, 9, 76873, 191 2 0 0 0 0 0 0 - SGN-E222408 210 8 201 C04HBa0008K13.1 117382 76873 77066 1 193, 9, 76873, 390 0 0 0 0 0 2 2569 - SGN-E218538 417 0 390 C04HBa0008K13.1 117382 51011 53970 3 328,41,21, 27,355,396, 51011,53823,53949, 381 0 0 0 0 0 2 2569 - SGN-E218950 410 0 381 C04HBa0008K13.1 117382 51013 53963 3 326,41,14, 29,355,396, 51013,53823,53949, 98 3 0 0 1 44 2 22 + SGN-E217478 385 220 365 C04HBa0008K13.1 117382 68510 68633 3 29,39,33, 220,249,332, 68510,68559,68600, 102 3 0 0 2 45 2 22 + SGN-E228654 468 303 453 C04HBa0008K13.1 117382 68510 68637 4 29,39,33,4, 303,332,415,449, 68510,68559,68600,68633, 102 3 0 0 1 44 2 22 + SGN-E229134 397 232 381 C04HBa0008K13.1 117382 68510 68637 3 29,39,37, 232,261,344, 68510,68559,68600, 71 1 0 0 2 22 1 3 - SGN-E230552 384 118 212 C04HBa0008K13.1 117382 21565 21640 3 19,23,30, 172,200,236, 21565,21584,21610, 40 0 0 0 0 0 0 0 - SGN-E233998 377 319 359 C04HBa0008K13.1 117382 68871 68911 1 40, 18, 68871, 39 0 0 0 0 0 0 0 - SGN-E234253 351 293 332 C04HBa0008K13.1 117382 68872 68911 1 39, 19, 68872, 455 12 0 0 2 8 7 555 + SGN-E271618 475 0 475 C04HBa0008K13.1 117382 42164 43186 8 44,16,136,56,57,141,4,13, 0,49,65,201,257,314,458,462, 42164,42212,42349,42614,42754,42890,43168,43173, 391 15 0 0 0 0 0 0 - SGN-E272924 461 55 461 C04HBa0008K13.1 117382 52954 53360 1 406, 0, 52954, 430 0 0 0 0 0 0 0 - SGN-E273044 485 55 485 C04HBa0008K13.1 117382 52930 53360 1 430, 0, 52930, 595 0 0 0 0 0 3 2181 + SGN-E269641 595 0 595 C04HBa0008K13.1 117382 106227 109003 4 55,95,275,170, 0,55,150,425, 106227,106482,107653,108833, 481 2 0 0 0 0 1 1593 - SGN-E286705 519 22 505 C04HBa0008K13.1 117382 99718 101794 2 74,409, 14,88, 99718,101385, 44 3 0 0 0 0 0 0 - SGN-E283769 457 17 64 C04HBa0008K13.1 117382 20072 20119 1 47, 393, 20072, 505 0 0 0 0 0 2 2569 - SGN-E284767 510 0 505 C04HBa0008K13.1 117382 50995 54069 3 344,41,120, 5,349,390, 50995,53823,53949, 445 7 0 0 0 0 2 2569 - SGN-E295313 452 0 452 C04HBa0008K13.1 117382 51040 54061 3 299,41,112, 0,299,340, 51040,53823,53949, 441 0 0 0 0 0 1 513 + SGN-E296241 450 0 441 C04HBa0008K13.1 117382 95977 96931 2 76,365, 0,76, 95977,96566, 311 5 0 0 0 0 1 644 + SGN-E298762 316 0 316 C04HBa0008K13.1 117382 73390 74350 2 227,89, 0,227, 73390,74261, 459 16 0 0 0 0 2 2569 - SGN-E308411 483 0 475 C04HBa0008K13.1 117382 50995 54039 3 344,41,90, 8,352,393, 50995,53823,53949, 156 0 0 0 0 0 0 0 + SGN-E303608 217 0 156 C04HBa0008K13.1 117382 85372 85528 1 156, 0, 85372, 695 1 0 0 0 0 1 156 - SGN-E333224 696 0 696 C04HBa0008K13.1 117382 7399 8251 2 594,102, 0,594, 7399,8149, 447 2 0 1 0 0 0 0 + SGN-E323384 450 0 450 C04HBa0008K13.1 117382 95465 95915 1 450, 0, 95465, 415 0 0 0 0 0 2 2569 - SGN-E338182 415 0 415 C04HBa0008K13.1 117382 51085 54069 3 254,41,120, 0,254,295, 51085,53823,53949, 466 0 0 0 0 0 3 2414 - SGN-E345387 472 0 466 C04HBa0008K13.1 117382 103107 105987 4 352,33,45,36, 6,358,391,436, 103107,103545,105795,105951, 672 1 0 2 0 0 5 2757 + SGN-E348779 675 0 675 C04HBa0008K13.1 117382 73477 76909 6 140,156,92,46,181,60, 0,140,296,388,434,615, 73477,74261,74509,74720,76667,76849, 720 0 0 0 0 0 3 2176 + SGN-E339382 720 0 720 C04HBa0008K13.1 117382 106225 109121 4 57,95,275,293, 0,57,152,427, 106225,106482,107653,108828, 454 0 0 0 0 0 2 2569 - SGN-E352680 474 0 454 C04HBa0008K13.1 117382 51036 54059 3 303,41,110, 20,323,364, 51036,53823,53949, 115 9 0 0 0 0 0 0 - SGN-E352216 505 131 255 C04HBa0008K13.1 117382 99685 99809 1 124, 250, 99685, 115 9 0 0 0 0 0 0 - SGN-E353459 535 131 255 C04HBa0008K13.1 117382 99685 99809 1 124, 280, 99685, 115 9 0 0 0 0 0 0 - SGN-E353582 501 131 255 C04HBa0008K13.1 117382 99685 99809 1 124, 246, 99685, 456 0 0 0 0 0 2 2569 - SGN-E354770 482 0 456 C04HBa0008K13.1 117382 51034 54059 3 305,41,110, 26,331,372, 51034,53823,53949, 211 0 0 0 0 0 2 736 + SGN-E349126 211 0 211 C04HBa0008K13.1 117382 73572 74519 3 45,156,10, 0,45,201, 73572,74261,74509, 494 0 0 0 0 0 2 2569 - SGN-E351138 509 0 494 C04HBa0008K13.1 117382 50995 54058 3 344,41,109, 15,359,400, 50995,53823,53949, 54 3 0 0 0 0 0 0 - SGN-E362032 430 373 430 C04HBa0008K13.1 117382 68862 68919 1 57, 0, 68862, 35 1 0 0 0 0 1 20 - SGN-E696439 560 518 554 C04HBa0008K13.1 117382 97080 97136 2 25,11, 6,31, 97080,97125,