psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 1164 0 0 0 0 0 5 3908 - SGN-E746370 1178 0 1164 C04HBa0036C23.1 114152 97260 102332 6 412,86,97,98,178,293, 14,426,512,609,707,885, 97260,97778,98333,100309,101032,102039, 1018 26 0 0 5 26 9 3690 - SGN-E746370 1178 0 1070 C04HBa0036C23.1 114152 80396 85130 12 6,75,34,17,104,59,86,97,98,176,287,5, 108,114,189,225,257,367,426,512,609,709,885,1173, 80396,80403,80480,80514,80535,80650,80819,81379,83289,84088,84838,85125, 33 1 0 0 0 0 0 0 + SGN-E746368 798 306 340 C04HBa0036C23.1 114152 78341 78375 1 34, 306, 78341, 158 11 0 0 1 37 1 131 + SGN-E555460 627 375 581 C04HBa0036C23.1 114152 41010 41310 2 104,65, 375,516, 41010,41245, 484 0 0 0 0 0 4 3802 - SGN-E207611 484 0 484 C04HBa0036C23.1 114152 97829 102115 5 35,97,98,178,76, 0,35,132,230,408, 97829,98333,100309,101032,102039, 473 9 0 0 1 2 4 3562 - SGN-E207611 484 0 484 C04HBa0036C23.1 114152 80870 84914 5 35,97,98,176,76, 0,35,132,232,408, 80870,81379,83289,84088,84838, 600 8 0 0 0 0 3 6294 - SGN-E210505 608 0 608 C04HBa0036C23.1 114152 46706 53608 4 54,106,243,205, 0,54,160,403, 46706,49144,49341,53403, 565 0 0 0 0 0 1 316 + SGN-E210474 565 0 565 C04HBa0036C23.1 114152 112063 112944 2 30,535, 0,30, 112063,112409, 499 0 0 0 0 0 4 6691 - SGN-E208409 499 0 499 C04HBa0036C23.1 114152 46252 53442 5 11,100,106,243,39, 0,11,111,217,460, 46252,46660,49144,49341,53403, 773 0 0 1 0 0 4 691 + SGN-E211561 774 0 774 C04HBa0036C23.1 114152 111331 112796 5 20,369,356,20,9, 0,20,389,745,765, 111331,111724,112409,112766,112787, 505 2 0 0 0 0 2 6781 + SGN-E202057 507 0 507 C04HBa0036C23.1 114152 3329 10617 3 200,123,184, 0,200,323, 3329,6232,10433, 703 0 0 1 0 0 4 6691 - SGN-E578009 704 0 704 C04HBa0036C23.1 114152 46212 53607 5 51,100,106,243,204, 0,51,151,257,500, 46212,46660,49144,49341,53403, 33 1 0 0 0 0 0 0 + SGN-E318902 536 304 338 C04HBa0036C23.1 114152 78341 78375 1 34, 304, 78341, 801 0 0 0 1 1 6 6966 - SGN-E321334 812 0 802 C04HBa0036C23.1 114152 45796 53563 8 4,47,35,106,100,106,243,160, 10,15,62,97,203,303,409,652, 45796,45800,45848,46157,46660,49144,49341,53403, 433 0 0 0 0 0 0 0 + SGN-E322433 462 29 462 C04HBa0036C23.1 114152 21166 21599 1 433, 29, 21166, 433 0 0 0 0 0 0 0 + SGN-E322434 462 29 462 C04HBa0036C23.1 114152 21166 21599 1 433, 29, 21166, 33 1 0 0 0 0 0 0 + SGN-E321874 597 304 338 C04HBa0036C23.1 114152 78341 78375 1 34, 304, 78341, 33 1 0 0 0 0 0 0 + SGN-E311047 586 167 201 C04HBa0036C23.1 114152 78341 78375 1 34, 167, 78341, 87 3 0 0 0 0 0 0 - SGN-E378905 710 531 621 C04HBa0036C23.1 114152 38160 38250 1 90, 89, 38160, 708 1 0 0 0 0 2 317 + SGN-E379710 709 0 709 C04HBa0036C23.1 114152 112063 113089 3 30,629,50, 0,30,659, 112063,112409,113039, 41 0 0 0 0 0 0 0 + SGN-E380056 711 0 41 C04HBa0036C23.1 114152 113878 113919 1 41, 0, 113878, 702 1 0 0 0 0 2 575 - SGN-E375216 715 0 703 C04HBa0036C23.1 114152 97112 98390 3 560,86,57, 12,572,658, 97112,97778,98333, 563 20 0 0 7 120 9 634 - SGN-E375216 715 0 703 C04HBa0036C23.1 114152 80219 81436 14 25,4,68,13,19,13,9,75,34,17,104,59,86,57, 12,38,48,116,129,149,251,260,335,371,403,513,572,658, 80219,80244,80251,80325,80347,80366,80379,80403,80480,80514,80535,80650,80819,81379, 572 15 0 0 1 1 2 1176 - SGN-E376526 618 0 588 C04HBa0036C23.1 114152 40809 42572 3 332,128,127, 30,362,491, 40809,41235,42445, 580 0 0 0 0 0 3 6294 - SGN-E376527 580 0 580 C04HBa0036C23.1 114152 46734 53608 4 26,106,243,205, 0,26,132,375, 46734,49144,49341,53403, 610 0 0 0 0 0 1 106 - SGN-E389649 610 0 610 C04HBa0036C23.1 114152 97136 97852 2 536,74, 0,536, 97136,97778, 466 19 0 0 5 113 7 157 - SGN-E389649 610 0 598 C04HBa0036C23.1 114152 80251 80893 11 68,13,19,13,9,75,32,19,104,59,74, 12,80,93,113,215,224,299,333,367,477,536, 80251,80325,80347,80366,80379,80403,80480,80512,80535,80650,80819, 642 0 0 0 0 0 1 106 - SGN-E390052 648 0 642 C04HBa0036C23.1 114152 97104 97852 2 568,74, 6,574, 97104,97778, 509 20 0 0 7 114 9 154 - SGN-E390052 648 0 643 C04HBa0036C23.1 114152 80210 80893 13 34,4,68,13,19,22,6,75,34,17,104,59,74, 5,40,50,118,131,151,256,262,337,373,405,515,574, 80210,80244,80251,80325,80347,80366,80396,80403,80480,80514,80535,80650,80819, 361 1 0 0 0 0 3 457 + SGN-E390715 645 243 605 C04HBa0036C23.1 114152 109024 109843 4 119,72,78,93, 243,362,434,512, 109024,109215,109528,109750, 246 0 0 0 0 0 0 0 + SGN-E390715 645 0 246 C04HBa0036C23.1 114152 109788 110034 1 246, 0, 109788, 87 2 0 0 0 0 0 0 - SGN-E394882 497 37 126 C04HBa0036C23.1 114152 41010 41099 1 89, 371, 41010, 631 1 0 0 0 0 1 316 + SGN-E398488 635 0 632 C04HBa0036C23.1 114152 112062 113010 2 31,601, 0,31, 112062,112409, 60 0 0 0 0 0 0 0 - SGN-E538326 736 0 60 C04HBa0036C23.1 114152 41010 41070 1 60, 676, 41010, 59 1 0 0 0 0 0 0 - SGN-E538333 735 0 60 C04HBa0036C23.1 114152 41010 41070 1 60, 675, 41010, 60 0 0 0 0 0 0 0 - SGN-E538335 735 0 60 C04HBa0036C23.1 114152 41010 41070 1 60, 675, 41010, 225 0 0 0 0 0 0 0 + SGN-E540855 244 0 225 C04HBa0036C23.1 114152 21329 21554 1 225, 0, 21329, 60 0 0 0 0 0 0 0 - SGN-E548038 734 0 60 C04HBa0036C23.1 114152 41010 41070 1 60, 674, 41010, 225 0 0 0 0 0 0 0 + SGN-E548453 244 0 225 C04HBa0036C23.1 114152 21329 21554 1 225, 0, 21329, 33 1 0 0 0 0 0 0 + SGN-E548895 744 306 340 C04HBa0036C23.1 114152 78341 78375 1 34, 306, 78341, 61 0 0 0 2 289 4 518 - SGN-E549142 383 33 383 C04HBa0036C23.1 114152 107134 107713 5 7,25,6,8,15, 0,7,32,314,335, 107134,107579,107606,107683,107698, 642 0 0 0 0 0 1 106 - SGN-E550040 649 0 642 C04HBa0036C23.1 114152 97104 97852 2 568,74, 7,575, 97104,97778, 509 20 0 0 7 114 9 154 - SGN-E550040 649 0 643 C04HBa0036C23.1 114152 80210 80893 13 34,4,68,13,19,22,6,75,34,17,104,59,74, 6,41,51,119,132,152,257,263,338,374,406,516,575, 80210,80244,80251,80325,80347,80366,80396,80403,80480,80514,80535,80650,80819, 606 3 0 0 0 0 2 107 - SGN-E550371 609 0 609 C04HBa0036C23.1 114152 97136 97852 3 7,528,74, 0,7,535, 97136,97144,97778, 464 21 0 0 5 113 7 157 - SGN-E550371 609 0 598 C04HBa0036C23.1 114152 80251 80893 11 68,13,19,13,9,75,32,19,104,59,74, 11,79,92,112,214,223,298,332,366,476,535, 80251,80325,80347,80366,80379,80403,80480,80512,80535,80650,80819, 437 0 0 0 0 0 1 884 - SGN-E240193 512 0 437 C04HBa0036C23.1 114152 29988 31309 2 253,184, 75,328, 29988,31125, 96 0 0 0 0 0 0 0 + SGN-E241255 462 0 96 C04HBa0036C23.1 114152 113823 113919 1 96, 0, 113823, 96 0 0 0 0 0 0 0 + SGN-E241932 589 0 96 C04HBa0036C23.1 114152 113823 113919 1 96, 0, 113823, 633 7 0 0 0 0 2 107 - SGN-E228143 647 0 640 C04HBa0036C23.1 114152 97104 97851 3 61,506,73, 7,68,574, 97104,97166,97778, 498 23 0 0 7 120 9 161 - SGN-E228143 647 0 641 C04HBa0036C23.1 114152 80210 80892 14 34,4,17,50,13,18,14,9,75,32,19,104,59,73, 6,41,51,68,118,131,150,253,262,337,371,405,515,574, 80210,80244,80251,80269,80325,80347,80365,80379,80403,80480,80512,80535,80650,80819, 798 3 0 0 1 1 3 7454 + SGN-E729949 802 0 802 C04HBa0036C23.1 114152 2287 10542 5 374,195,123,63,46, 0,374,569,692,756, 2287,3334,6232,10433,10496, 909 5 0 0 1 1 7 3672 - SGN-E730744 920 5 920 C04HBa0036C23.1 114152 80517 85103 9 63,42,4,81,86,97,98,178,265, 0,63,105,110,191,277,374,472,650, 80517,80581,80624,80628,80819,81379,83289,84086,84838, 878 19 0 0 4 18 9 3933 - SGN-E730744 920 5 920 C04HBa0036C23.1 114152 97474 102304 11 14,45,42,4,11,59,86,97,98,176,265, 0,18,63,105,110,132,191,277,374,474,650, 97474,97503,97549,97592,97596,97613,97778,98333,100309,101034,102039, 33 1 0 0 0 0 0 0 + SGN-E718887 853 331 365 C04HBa0036C23.1 114152 78341 78375 1 34, 331, 78341, 33 1 0 0 0 0 0 0 + SGN-E719708 875 331 365 C04HBa0036C23.1 114152 78341 78375 1 34, 331, 78341, 33 1 0 0 0 0 0 0 + SGN-E721179 808 331 365 C04HBa0036C23.1 114152 78341 78375 1 34, 331, 78341, 617 4 0 0 0 0 3 3086 - SGN-E724181 621 0 621 C04HBa0036C23.1 114152 81375 85082 4 101,98,178,244, 0,101,199,377, 81375,83289,84086,84838, 365 10 0 0 1 2 2 2506 - SGN-E724181 621 244 621 C04HBa0036C23.1 114152 98329 101210 3 101,98,176, 0,101,201, 98329,100309,101034, 240 4 0 0 0 0 0 0 - SGN-E724181 621 0 244 C04HBa0036C23.1 114152 102039 102283 1 244, 377, 102039, 52 0 0 0 1 5 3 30371 - SGN-E724367 660 583 640 C04HBa0036C23.1 114152 77180 107603 4 24,3,19,6, 20,44,47,71, 77180,92684,107577,107597, 592 11 0 0 0 0 0 0 - SGN-E735482 610 7 610 C04HBa0036C23.1 114152 25030 25633 1 603, 0, 25030, 842 1 0 0 0 0 3 1856 - SGN-E739901 843 0 843 C04HBa0036C23.1 114152 39862 42561 4 434,164,126,119, 0,434,598,724, 39862,40977,41235,42442, 38 0 0 0 1 2 2 9 - SGN-E739905 462 418 458 C04HBa0036C23.1 114152 77180 77227 3 25,6,7, 4,29,37, 77180,77208,77220, 789 0 0 0 0 0 3 7454 + SGN-E698173 789 0 789 C04HBa0036C23.1 114152 2287 10530 4 374,195,123,97, 0,374,569,692, 2287,3334,6232,10433, 891 1 0 0 0 0 1 4367 - SGN-E699192 893 1 893 C04HBa0036C23.1 114152 13121 18380 2 663,229, 0,663, 13121,18151, 533 0 0 0 0 0 1 86 + SGN-E701886 894 0 533 C04HBa0036C23.1 114152 113300 113919 2 427,106, 0,427, 113300,113813, 533 0 0 0 0 0 1 86 + SGN-E701898 866 0 533 C04HBa0036C23.1 114152 113300 113919 2 427,106, 0,427, 113300,113813, 804 1 0 0 0 0 1 4367 - SGN-E703389 805 0 805 C04HBa0036C23.1 114152 13357 18529 2 427,378, 0,427, 13357,18151, 847 2 0 0 2 3 4 7455 + SGN-E703438 852 0 852 C04HBa0036C23.1 114152 2312 10616 6 349,195,123,136,38,8, 0,349,544,667,805,844, 2312,3334,6232,10433,10570,10608, 826 0 0 0 0 0 5 3502 - SGN-E708951 830 4 830 C04HBa0036C23.1 114152 40977 45305 6 164,126,157,110,148,121, 0,164,290,447,557,705, 40977,41235,42442,43930,44170,45184, 61 4 0 0 0 0 0 0 - SGN-E709146 785 523 588 C04HBa0036C23.1 114152 98371 98436 1 65, 197, 98371, 42 0 0 0 0 0 2 211 - SGN-E713130 667 573 615 C04HBa0036C23.1 114152 107349 107602 3 11,7,24, 52,63,70, 107349,107438,107578, 142 8 0 0 1 1 1 1 - SGN-E243215 460 75 226 C04HBa0036C23.1 114152 87270 87421 3 138,8,4, 234,372,381, 87270,87409,87417, 617 1 0 0 0 0 4 2636 - SGN-E244890 618 0 618 C04HBa0036C23.1 114152 41013 44267 5 128,126,157,110,97, 0,128,254,411,521, 41013,41235,42442,43930,44170, 523 1 0 0 0 0 1 3819 - SGN-E246123 524 0 524 C04HBa0036C23.1 114152 49507 53850 2 77,447, 0,77, 49507,53403, 462 1 0 0 0 0 2 1019 + SGN-E248142 463 0 463 C04HBa0036C23.1 114152 110365 111847 3 178,162,123, 0,178,340, 110365,111189,111724, 439 0 0 0 0 0 3 1606 - SGN-E249492 439 0 439 C04HBa0036C23.1 114152 44172 46217 4 146,142,91,60, 0,146,288,379, 44172,45184,45792,46157, 302 13 0 0 1 1 1 317 + SGN-E248579 316 0 316 C04HBa0036C23.1 114152 111850 112482 2 242,73, 0,243, 111850,112409, 257 1 0 0 3 3 5 2877 - SGN-E252732 261 0 261 C04HBa0036C23.1 114152 46244 49379 8 19,60,4,31,61,45,24,14, 0,19,80,84,115,177,222,247, 46244,46660,46724,46729,49144,49205,49341,49365, 564 1 0 0 0 0 10 3622 - SGN-E252865 565 0 565 C04HBa0036C23.1 114152 45195 49382 11 131,33,57,106,59,4,9,20,106,35,5, 0,131,164,221,327,386,390,399,419,525,560, 45195,45792,45826,46157,46660,46724,46730,46740,49144,49341,49377, 317 3 0 0 0 0 2 1332 - SGN-E257551 331 5 325 C04HBa0036C23.1 114152 44168 45820 3 150,142,28, 6,156,298, 44168,45184,45792, 289 7 0 0 0 0 0 0 - SGN-E257552 296 0 296 C04HBa0036C23.1 114152 39895 40191 1 296, 0, 39895, 468 0 0 0 0 0 1 86 + SGN-E258286 643 0 468 C04HBa0036C23.1 114152 113365 113919 2 362,106, 0,362, 113365,113813, 191 0 0 0 1 1 0 0 - SGN-E219331 207 0 192 C04HBa0036C23.1 114152 21699 21890 2 68,123, 15,84, 21699,21767, 425 1 0 0 0 0 0 0 - SGN-E218467 441 0 426 C04HBa0036C23.1 114152 21699 22125 1 426, 15, 21699, 424 1 0 0 0 0 0 0 - SGN-E218610 440 0 425 C04HBa0036C23.1 114152 21699 22124 1 425, 15, 21699, 412 2 0 0 0 0 0 0 - SGN-E215509 432 0 414 C04HBa0036C23.1 114152 39744 40158 1 414, 18, 39744, 324 25 0 0 0 0 0 0 + SGN-E219847 393 0 349 C04HBa0036C23.1 114152 11901 12250 1 349, 0, 11901, 306 19 0 0 0 0 0 0 + SGN-E219895 369 0 325 C04HBa0036C23.1 114152 11925 12250 1 325, 0, 11925, 80 3 0 0 1 59 3 38 - SGN-E230552 384 3 145 C04HBa0036C23.1 114152 95893 96014 4 20,13,14,36, 239,318,331,345, 95893,95941,95955,95978, 59 0 0 0 0 0 0 0 - SGN-E269609 579 0 59 C04HBa0036C23.1 114152 41010 41069 1 59, 520, 41010, 32 2 0 0 0 0 0 0 - SGN-E283987 408 291 325 C04HBa0036C23.1 114152 90102 90136 1 34, 83, 90102, 66 0 0 0 0 0 0 0 - SGN-E288683 507 440 506 C04HBa0036C23.1 114152 85041 85107 1 66, 1, 85041, 63 1 0 0 0 0 0 0 - SGN-E288683 507 442 506 C04HBa0036C23.1 114152 102242 102306 1 64, 1, 102242, 33 1 0 0 0 0 0 0 + SGN-E290266 385 303 337 C04HBa0036C23.1 114152 78341 78375 1 34, 303, 78341, 33 2 0 0 0 0 0 0 - SGN-E290266 385 303 338 C04HBa0036C23.1 114152 90101 90136 1 35, 47, 90101, 215 0 0 2 0 0 0 0 + SGN-E289895 234 0 217 C04HBa0036C23.1 114152 21339 21556 1 217, 0, 21339, 628 0 0 0 0 0 5 6965 - SGN-E302392 628 0 628 C04HBa0036C23.1 114152 45842 53435 6 41,106,100,106,243,32, 0,41,147,247,353,596, 45842,46157,46660,49144,49341,53403, 33 1 0 0 0 0 0 0 + SGN-E305042 442 208 242 C04HBa0036C23.1 114152 78341 78375 1 34, 208, 78341, 542 1 0 0 0 0 2 1454 - SGN-E303756 543 0 543 C04HBa0036C23.1 114152 100344 102341 3 63,178,302, 0,63,241, 100344,101032,102039, 528 11 0 0 2 3 2 1275 - SGN-E303756 543 1 543 C04HBa0036C23.1 114152 83324 85138 4 63,176,287,13, 0,65,241,529, 83324,84088,84838,85125, 131 9 0 0 1 100 1 826 - SGN-E303756 543 302 542 C04HBa0036C23.1 114152 69593 70559 2 62,78, 1,163, 69593,70481, 537 0 0 0 0 0 2 1454 - SGN-E305081 537 0 537 C04HBa0036C23.1 114152 100339 102330 3 68,178,291, 0,68,246, 100339,101032,102039, 520 11 0 0 1 2 2 1275 - SGN-E305081 537 4 537 C04HBa0036C23.1 114152 83319 85125 3 68,176,287, 0,70,246, 83319,84088,84838, 355 0 0 0 0 0 0 0 + SGN-E308584 417 32 387 C04HBa0036C23.1 114152 21169 21524 1 355, 32, 21169, 61 0 0 0 2 289 4 520 - SGN-E308423 382 32 382 C04HBa0036C23.1 114152 107132 107713 5 7,25,6,8,15, 0,7,32,314,335, 107132,107579,107606,107683,107698, 33 1 0 0 0 0 0 0 + SGN-E302830 546 292 326 C04HBa0036C23.1 114152 78341 78375 1 34, 292, 78341, 65 3 0 0 0 0 0 0 - SGN-E332992 721 429 497 C04HBa0036C23.1 114152 29583 29651 1 68, 224, 29583, 65 3 0 0 0 0 0 0 - SGN-E333317 740 429 497 C04HBa0036C23.1 114152 29583 29651 1 68, 243, 29583, 482 0 0 0 0 0 1 3819 - SGN-E331062 482 0 482 C04HBa0036C23.1 114152 49361 53662 2 223,259, 0,223, 49361,53403, 165 0 0 0 0 0 2 671 - SGN-E325052 165 0 165 C04HBa0036C23.1 114152 45867 46703 3 16,106,43, 0,16,122, 45867,46157,46660, 561 1 0 0 0 0 1 673 + SGN-E323408 589 0 562 C04HBa0036C23.1 114152 2295 3530 2 366,196, 0,366, 2295,3334, 304 0 0 0 1 1 3 458 + SGN-E312114 547 242 547 C04HBa0036C23.1 114152 109024 109786 4 119,72,77,36, 242,361,433,511, 109024,109215,109528,109750, 245 0 0 0 0 0 0 0 + SGN-E312114 547 0 245 C04HBa0036C23.1 114152 109789 110034 1 245, 0, 109789, 461 1 0 0 0 0 2 5744 - SGN-E313320 462 0 462 C04HBa0036C23.1 114152 22110 28316 3 123,278,61, 0,123,401, 22110,26698,28255, 732 0 0 1 0 0 2 5744 - SGN-E314195 733 0 733 C04HBa0036C23.1 114152 21823 28300 3 410,278,45, 0,410,688, 21823,26698,28255, 297 3 0 0 0 0 2 1234 + SGN-E335945 323 23 323 C04HBa0036C23.1 114152 108844 110378 3 25,218,57, 23,48,266, 108844,110003,110321, 33 1 0 0 0 0 0 0 - SGN-E344176 648 509 543 C04HBa0036C23.1 114152 78341 78375 1 34, 105, 78341, 33 1 0 0 0 0 0 0 + SGN-E345534 698 305 339 C04HBa0036C23.1 114152 78341 78375 1 34, 305, 78341, 33 2 0 0 0 0 0 0 - SGN-E345534 698 305 340 C04HBa0036C23.1 114152 90101 90136 1 35, 358, 90101, 33 1 0 0 0 0 0 0 + SGN-E347611 675 304 338 C04HBa0036C23.1 114152 78341 78375 1 34, 304, 78341, 33 1 0 0 0 0 0 0 + SGN-E340141 569 305 339 C04HBa0036C23.1 114152 78341 78375 1 34, 305, 78341, 698 0 0 1 1 1 0 0 + SGN-E340022 700 0 700 C04HBa0036C23.1 114152 58268 58967 2 668,31, 0,669, 58268,58936, 58 0 0 0 1 5 3 30380 - SGN-E353836 589 520 583 C04HBa0036C23.1 114152 77180 107618 4 24,5,21,8, 6,30,35,61, 77180,103977,107577,107610, 315 0 0 0 1 1 1 1 - SGN-E355088 316 0 316 C04HBa0036C23.1 114152 39933 40249 3 25,18,272, 0,25,44, 39933,39959,39977, 393 0 0 0 0 0 0 0 - SGN-E354904 407 0 393 C04HBa0036C23.1 114152 39856 40249 1 393, 14, 39856, 363 11 0 0 0 0 2 2475 - SGN-E362548 374 0 374 C04HBa0036C23.1 114152 46722 49571 3 38,106,230, 0,38,144, 46722,49144,49341,