psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 38 0 0 0 0 0 2 67 + SGN-E745870 1324 1269 1307 C04HBa0050I18.1 113641 21236 21341 3 16,7,15, 1269,1285,1292, 21236,21316,21326, 33 1 0 0 0 0 0 0 + SGN-E744976 1460 1400 1434 C04HBa0050I18.1 113641 101 135 1 34, 1400, 101, 136 8 0 0 1 5 2 4681 - SGN-E689188 743 85 234 C04HBa0050I18.1 113641 58891 63716 3 81,6,57, 509,595,601, 58891,63652,63659, 41 0 0 0 0 0 2 1009 + SGN-E551654 552 435 476 C04HBa0050I18.1 113641 20205 21255 3 15,8,18, 435,450,458, 20205,20576,21237, 32 1 0 0 0 0 0 0 - SGN-E207061 569 177 210 C04HBa0050I18.1 113641 5430 5463 1 33, 359, 5430, 39 0 0 0 0 0 1 1021 - SGN-E210155 448 44 83 C04HBa0050I18.1 113641 20196 21256 2 24,15, 365,389, 20196,21241, 75 0 0 0 0 0 0 0 + SGN-E577941 784 577 652 C04HBa0050I18.1 113641 1678 1753 1 75, 577, 1678, 39 0 0 0 0 0 2 126 + SGN-E557059 677 627 666 C04HBa0050I18.1 113641 21236 21401 3 20,4,15, 627,647,651, 21236,21273,21386, 37 2 0 0 0 0 1 3 - SGN-E319362 410 106 145 C04HBa0050I18.1 113641 75534 75576 2 6,33, 265,271, 75534,75543, 32 0 0 0 0 0 0 0 - SGN-E320544 553 359 391 C04HBa0050I18.1 113641 5431 5463 1 32, 162, 5431, 136 8 0 0 1 5 2 4681 - SGN-E309926 356 83 232 C04HBa0050I18.1 113641 58891 63716 3 81,6,57, 124,210,216, 58891,63652,63659, 597 5 0 0 1 5 1 4 + SGN-E310561 607 0 607 C04HBa0050I18.1 113641 21417 22023 2 44,558, 0,49, 21417,21465, 327 0 0 0 0 0 0 0 - SGN-E308326 327 0 327 C04HBa0050I18.1 113641 9405 9732 1 327, 0, 9405, 31 0 0 0 0 0 0 0 - SGN-E379008 694 625 656 C04HBa0050I18.1 113641 5431 5462 1 31, 38, 5431, 33 1 0 0 0 0 0 0 - SGN-E378372 702 390 424 C04HBa0050I18.1 113641 102 136 1 34, 278, 102, 136 8 0 0 1 5 2 4681 - SGN-E378308 413 82 231 C04HBa0050I18.1 113641 58891 63716 3 81,6,57, 182,268,274, 58891,63652,63659, 54 0 0 0 2 160 3 106 - SGN-E378239 347 133 347 C04HBa0050I18.1 113641 21184 21344 4 9,10,17,18, 0,12,179,196, 21184,21198,21236,21326, 31 0 0 0 0 0 0 0 - SGN-E367826 539 418 449 C04HBa0050I18.1 113641 5429 5460 1 31, 90, 5429, 36 0 0 0 0 0 1 1 + SGN-E369471 766 0 36 C04HBa0050I18.1 113641 5429 5466 2 32,4, 0,32, 5429,5462, 51 0 0 0 1 1 4 245 + SGN-E373983 637 585 637 C04HBa0050I18.1 113641 21040 21336 5 6,13,4,18,10, 585,592,605,609,627, 21040,21048,21115,21236,21326, 36 2 0 0 0 0 0 0 + SGN-E374116 649 527 565 C04HBa0050I18.1 113641 103 141 1 38, 527, 103, 34 1 0 0 0 0 0 0 + SGN-E374379 719 649 684 C04HBa0050I18.1 113641 101 136 1 35, 649, 101, 34 1 0 0 0 0 0 0 + SGN-E376006 672 488 523 C04HBa0050I18.1 113641 75540 75575 1 35, 488, 75540, 49 0 0 0 1 14 3 83 + SGN-E376338 395 238 301 C04HBa0050I18.1 113641 21208 21340 4 8,18,8,15, 238,246,278,286, 21208,21237,21312,21325, 54 1 0 0 1 19 3 138 + SGN-E390501 380 219 293 C04HBa0050I18.1 113641 21208 21401 4 8,17,15,15, 219,227,244,278, 21208,21237,21269,21386, 136 8 0 0 1 5 2 4681 - SGN-E390507 669 83 232 C04HBa0050I18.1 113641 58891 63716 3 81,6,57, 437,523,529, 58891,63652,63659, 41 1 0 0 1 14 2 4 + SGN-E393340 612 534 590 C04HBa0050I18.1 113641 21294 21340 3 8,20,14, 534,556,576, 21294,21303,21326, 34 1 0 0 0 0 0 0 - SGN-E396606 387 149 184 C04HBa0050I18.1 113641 104 139 1 35, 203, 104, 36 0 0 0 0 0 1 1022 + SGN-E397422 496 454 490 C04HBa0050I18.1 113641 20196 21254 2 24,12, 454,478, 20196,21242, 41 0 0 0 1 4 2 14 + SGN-E539284 839 780 825 C04HBa0050I18.1 113641 21199 21254 3 17,7,17, 780,801,808, 21199,21223,21237, 36 0 0 0 0 0 1 1 + SGN-E539869 709 175 211 C04HBa0050I18.1 113641 5429 5466 2 32,4, 175,207, 5429,5462, 46 0 0 0 1 5 2 8075 - SGN-E541243 570 24 75 C04HBa0050I18.1 113641 21226 29347 3 9,17,20, 495,509,526, 21226,21236,29327, 43 1 0 0 0 0 2 61 + SGN-E541428 812 766 810 C04HBa0050I18.1 113641 21236 21341 3 18,11,15, 766,784,795, 21236,21312,21326, 41 0 0 0 0 0 2 114 + SGN-E541933 271 230 271 C04HBa0050I18.1 113641 21237 21392 3 18,17,6, 230,248,265, 21237,21323,21386, 110 4 0 0 1 18 4 4697 - SGN-E542165 654 0 132 C04HBa0050I18.1 113641 58886 63697 5 6,77,3,8,20, 522,528,605,608,634, 58886,58895,63605,63650,63677, 128 5 0 0 1 18 4 4697 - SGN-E542170 850 169 320 C04HBa0050I18.1 113641 58886 63716 5 6,77,3,8,39, 530,536,613,616,642, 58886,58895,63605,63650,63677, 41 0 0 0 0 0 2 122 + SGN-E542894 737 686 727 C04HBa0050I18.1 113641 21238 21401 3 18,13,10, 686,704,717, 21238,21327,21391, 46 0 0 0 1 1 2 1090 + SGN-E543018 623 573 620 C04HBa0050I18.1 113641 20205 21341 3 15,16,15, 573,588,605, 20205,21237,21326, 33 1 0 0 0 0 0 0 + SGN-E543727 758 628 662 C04HBa0050I18.1 113641 102 136 1 34, 628, 102, 58 0 0 0 0 0 3 1082 + SGN-E544993 638 577 635 C04HBa0050I18.1 113641 20201 21341 4 19,17,7,15, 577,596,613,620, 20201,21237,21316,21326, 42 1 0 0 0 0 2 1012 + SGN-E546023 659 598 641 C04HBa0050I18.1 113641 20199 21254 3 21,4,18, 598,619,623, 20199,21087,21236, 42 1 0 0 0 0 2 63 + SGN-E546582 612 565 608 C04HBa0050I18.1 113641 21235 21341 3 18,10,15, 565,583,593, 21235,21313,21326, 36 0 0 0 0 0 1 1 + SGN-E548291 558 0 36 C04HBa0050I18.1 113641 5429 5466 2 32,4, 0,32, 5429,5462, 39 0 0 0 0 0 2 67 + SGN-E548820 612 571 610 C04HBa0050I18.1 113641 21235 21341 3 19,5,15, 571,590,595, 21235,21273,21326, 37 0 0 0 0 0 2 68 + SGN-E549106 361 322 359 C04HBa0050I18.1 113641 21236 21341 3 17,5,15, 322,339,344, 21236,21318,21326, 31 0 0 0 0 0 0 0 + SGN-E719350 758 263 294 C04HBa0050I18.1 113641 5429 5460 1 31, 263, 5429, 40 0 0 0 0 0 2 63 + SGN-E719389 711 587 627 C04HBa0050I18.1 113641 21236 21339 3 19,6,15, 587,606,612, 21236,21293,21324, 34 0 0 0 0 0 1 69 + SGN-E719403 696 563 597 C04HBa0050I18.1 113641 21237 21340 2 19,15, 563,582, 21237,21325, 31 1 0 0 0 0 0 0 - SGN-E717849 597 360 392 C04HBa0050I18.1 113641 103 135 1 32, 205, 103, 41 0 0 0 0 0 2 1087 + SGN-E718634 631 590 631 C04HBa0050I18.1 113641 20207 21335 3 14,18,9, 590,604,622, 20207,21236,21326, 30 0 0 0 0 0 0 0 + SGN-E718803 363 317 347 C04HBa0050I18.1 113641 5429 5459 1 30, 317, 5429, 52 0 0 0 1 278 2 1083 + SGN-E720907 668 297 627 C04HBa0050I18.1 113641 20205 21340 3 15,21,16, 297,312,611, 20205,21237,21324, 716 2 0 0 0 0 1 98 - SGN-E721653 734 16 734 C04HBa0050I18.1 113641 70993 71809 2 335,383, 0,335, 70993,71426, 53 0 0 0 0 0 3 1082 + SGN-E723326 678 625 678 C04HBa0050I18.1 113641 20203 21338 4 17,5,19,12, 625,642,647,666, 20203,20459,21237,21326, 40 0 0 0 1 1 2 62 + SGN-E723864 683 642 683 C04HBa0050I18.1 113641 21237 21339 3 19,7,14, 642,662,669, 21237,21316,21325, 40 0 0 0 0 0 2 124 + SGN-E724536 521 481 521 C04HBa0050I18.1 113641 21237 21401 3 19,13,8, 481,500,513, 21237,21327,21393, 42 0 0 0 0 0 2 1092 + SGN-E724615 467 425 467 C04HBa0050I18.1 113641 20205 21339 3 15,14,13, 425,440,454, 20205,21242,21326, 74 4 0 0 0 0 5 9402 + SGN-E724852 572 376 454 C04HBa0050I18.1 113641 20196 29676 6 17,5,29,4,7,16, 376,393,398,427,431,438, 20196,21978,29312,29590,29642,29660, 48 0 0 0 1 11 4 27 + SGN-E732194 631 572 631 C04HBa0050I18.1 113641 21264 21339 5 14,6,8,7,13, 572,586,603,611,618, 21264,21279,21293,21316,21326, 772 0 0 0 0 0 0 0 + SGN-E734167 776 4 776 C04HBa0050I18.1 113641 21359 22131 1 772, 4, 21359, 33 1 0 0 0 0 0 0 + SGN-E735035 600 511 545 C04HBa0050I18.1 113641 104 138 1 34, 511, 104, 858 2 0 0 0 0 1 488 - SGN-E702038 860 0 860 C04HBa0050I18.1 113641 25206 26554 2 203,657, 0,203, 25206,25897, 32 1 0 0 0 0 0 0 - SGN-E702038 860 626 659 C04HBa0050I18.1 113641 106892 106925 1 33, 201, 106892, 58 0 0 0 0 0 3 1140 + SGN-E244150 368 292 350 C04HBa0050I18.1 113641 20203 21401 4 17,17,14,10, 292,309,326,340, 20203,21239,21326,21391, 51 1 0 0 0 0 1 53546 - SGN-E244201 560 278 330 C04HBa0050I18.1 113641 99 53697 2 31,21, 230,261, 99,53676, 159 7 0 0 1 1 3 5 + SGN-E243215 460 72 239 C04HBa0050I18.1 113641 34812 34983 5 98,46,4,5,13, 72,170,217,221,226, 34812,34912,34958,34963,34970, 163 6 0 0 3 16 2 2 + SGN-E243215 460 55 240 C04HBa0050I18.1 113641 81222 81393 6 9,30,6,62,56,6, 55,77,107,114,176,234, 81222,81231,81262,81268,81331,81387, 37 0 0 0 0 0 1 1 - SGN-E242278 536 488 525 C04HBa0050I18.1 113641 5429 5467 2 32,5, 11,43, 5429,5462, 35 1 0 0 0 0 1 5 - SGN-E243272 386 109 145 C04HBa0050I18.1 113641 5411 5452 2 10,26, 241,251, 5411,5426, 201 14 0 0 1 20 3 8 + SGN-E249562 623 232 467 C04HBa0050I18.1 113641 37270 37493 4 39,75,7,94, 232,271,346,373, 37270,37310,37389,37399, 265 1 0 0 1 1 0 0 - SGN-E248592 270 3 270 C04HBa0050I18.1 113641 25251 25517 2 204,62, 0,205, 25251,25455, 49 0 0 0 1 27 2 913 + SGN-E256561 512 215 291 C04HBa0050I18.1 113641 20439 21401 3 19,15,15, 215,261,276, 20439,21324,21386, 243 1 0 0 0 0 0 0 + SGN-E261843 593 0 244 C04HBa0050I18.1 113641 21895 22139 1 244, 0, 21895, 221 2 0 0 1 9 1 11 + SGN-E264472 235 0 232 C04HBa0050I18.1 113641 21905 22139 2 38,185, 0,47, 21905,21954, 38 0 0 0 0 0 2 322 + SGN-E220707 172 134 172 C04HBa0050I18.1 113641 29316 29676 3 5,19,14, 134,139,158, 29316,29322,29662, 331 3 0 0 0 0 0 0 - SGN-E216285 360 0 334 C04HBa0050I18.1 113641 24116 24450 1 334, 26, 24116, 32 2 0 0 0 0 0 0 + SGN-E218229 402 202 236 C04HBa0050I18.1 113641 102 136 1 34, 202, 102, 34 0 0 0 0 0 1 72 + SGN-E227156 384 350 384 C04HBa0050I18.1 113641 21234 21340 2 20,14, 350,370, 21234,21326, 34 0 0 0 0 0 1 72 + SGN-E227664 368 334 368 C04HBa0050I18.1 113641 21234 21340 2 20,14, 334,354, 21234,21326, 274 0 0 0 1 4 1 3 - SGN-E280068 285 0 278 C04HBa0050I18.1 113641 21416 21693 2 43,231, 7,54, 21416,21462, 30 0 0 0 0 0 0 0 + SGN-E274651 660 583 613 C04HBa0050I18.1 113641 75545 75575 1 30, 583, 75545, 31 0 0 0 0 0 0 0 - SGN-E274651 660 581 612 C04HBa0050I18.1 113641 104 135 1 31, 48, 104, 641 0 0 0 0 0 0 0 + SGN-E277088 641 0 641 C04HBa0050I18.1 113641 21399 22040 1 641, 0, 21399, 49 0 0 0 1 1 3 211 - SGN-E280414 304 1 51 C04HBa0050I18.1 113641 21141 21401 4 9,18,7,15, 253,263,281,288, 21141,21236,21316,21386, 42 0 0 0 0 0 2 1155 + SGN-E290344 473 362 404 C04HBa0050I18.1 113641 20204 21401 3 16,16,10, 362,378,394, 20204,21237,21391, 475 0 0 0 0 0 0 0 + SGN-E287557 475 0 475 C04HBa0050I18.1 113641 21398 21873 1 475, 0, 21398, 36 0 0 0 0 0 1 72 + SGN-E296542 293 257 293 C04HBa0050I18.1 113641 21232 21340 2 22,14, 257,279, 21232,21326, 40 0 0 0 0 0 2 1094 + SGN-E295942 410 370 410 C04HBa0050I18.1 113641 20204 21338 3 16,12,12, 370,386,398, 20204,21244,21326, 297 2 0 0 0 0 0 0 + SGN-E291417 299 0 299 C04HBa0050I18.1 113641 21435 21734 1 299, 0, 21435, 481 3 0 0 0 0 0 0 + SGN-E290146 484 0 484 C04HBa0050I18.1 113641 21389 21873 1 484, 0, 21389, 495 0 0 0 0 0 0 0 + SGN-E291680 495 0 495 C04HBa0050I18.1 113641 21386 21881 1 495, 0, 21386, 36 0 0 0 0 0 1 1 - SGN-E303073 441 113 149 C04HBa0050I18.1 113641 5429 5466 2 32,4, 292,324, 5429,5462, 31 1 0 0 0 0 0 0 + SGN-E332822 620 70 102 C04HBa0050I18.1 113641 75545 75577 1 32, 70, 75545, 52 3 0 0 0 0 0 0 + SGN-E329861 513 107 162 C04HBa0050I18.1 113641 104201 104256 1 55, 107, 104201, 513 0 0 0 0 0 1 8595 - SGN-E329861 513 0 513 C04HBa0050I18.1 113641 100789 109897 2 445,68, 0,445, 100789,109829, 66 1 0 0 1 73 1 40 - SGN-E329861 513 221 361 C04HBa0050I18.1 113641 82832 82939 2 21,46, 152,246, 82832,82893, 49 2 0 0 0 0 0 0 - SGN-E329861 513 213 264 C04HBa0050I18.1 113641 50861 50912 1 51, 249, 50861, 32 0 0 0 0 0 0 0 + SGN-E331059 513 480 512 C04HBa0050I18.1 113641 5427 5459 1 32, 480, 5427, 37 2 0 0 0 0 1 3 - SGN-E331883 609 235 274 C04HBa0050I18.1 113641 75534 75576 2 6,33, 335,341, 75534,75543, 37 2 0 0 0 0 1 3 - SGN-E331884 606 235 274 C04HBa0050I18.1 113641 75534 75576 2 6,33, 332,338, 75534,75543, 136 8 0 0 1 5 2 4681 - SGN-E326330 674 82 231 C04HBa0050I18.1 113641 58891 63716 3 81,6,57, 443,529,535, 58891,63652,63659, 459 1 0 0 0 0 0 0 - SGN-E325576 492 32 492 C04HBa0050I18.1 113641 3963 4423 1 460, 0, 3963, 706 0 0 0 0 0 0 0 - SGN-E327441 738 32 738 C04HBa0050I18.1 113641 3717 4423 1 706, 0, 3717, 135 9 0 0 1 5 2 4681 - SGN-E324513 675 82 231 C04HBa0050I18.1 113641 58891 63716 3 81,6,57, 444,530,536, 58891,63652,63659, 37 2 0 0 0 0 1 3 - SGN-E316250 703 230 269 C04HBa0050I18.1 113641 75534 75576 2 6,33, 434,440, 75534,75543, 32 1 0 0 0 0 0 0 + SGN-E338444 538 112 145 C04HBa0050I18.1 113641 104 137 1 33, 112, 104, 669 0 0 0 0 0 0 0 + SGN-E343336 672 0 669 C04HBa0050I18.1 113641 21412 22081 1 669, 0, 21412, 523 3 0 0 2 2 0 0 + SGN-E348192 535 0 528 C04HBa0050I18.1 113641 21608 22134 3 246,269,11, 0,247,517, 21608,21854,22123, 605 0 0 1 0 0 0 0 - SGN-E342670 606 0 606 C04HBa0050I18.1 113641 25048 25654 1 606, 0, 25048, 84 5 0 0 1 33 1 36 - SGN-E342670 606 437 559 C04HBa0050I18.1 113641 86901 87026 2 38,51, 47,118, 86901,86975, 32 1 0 0 0 0 0 0 - SGN-E349564 765 726 759 C04HBa0050I18.1 113641 104 137 1 33, 6, 104, 32 1 0 0 0 0 0 0 - SGN-E349310 765 726 759 C04HBa0050I18.1 113641 104 137 1 33, 6, 104, 33 1 0 0 0 0 0 0 + SGN-E357345 604 541 575 C04HBa0050I18.1 113641 104 138 1 34, 541, 104, 32 1 0 0 0 0 0 0 - SGN-E349972 832 799 832 C04HBa0050I18.1 113641 103 136 1 33, 0, 103, 371 14 0 0 0 0 1 4 - SGN-E367696 385 0 385 C04HBa0050I18.1 113641 36742 37131 2 277,108, 0,277, 36742,37023, 44 0 0 0 0 0 2 1094 + SGN-E690913 683 639 683 C04HBa0050I18.1 113641 20202 21340 3 18,12,14, 639,657,669, 20202,21244,21326, 462 16 0 0 4 10 3 14 - SGN-E359151 493 5 493 C04HBa0050I18.1 113641 36693 37185 6 313,12,106,14,17,16, 0,315,327,434,449,472, 36693,37007,37023,37129,37143,37169, 495 20 0 0 1 1 2 10 - SGN-E359109 542 0 516 C04HBa0050I18.1 113641 36660 37185 3 359,137,19, 26,385,523, 36660,37023,37166, 409 15 0 0 0 0 0 0 - SGN-E358119 424 0 424 C04HBa0050I18.1 113641 9219 9643 1 424, 0, 9219, 137 7 0 0 1 5 2 4681 - SGN-E358371 612 86 235 C04HBa0050I18.1 113641 58891 63716 3 81,6,57, 377,463,469, 58891,63652,63659,