psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 41 0 0 0 0 0 0 0 + SGN-E745449 1351 460 501 C04HBa0103J09.2 139342 50218 50259 1 41, 460, 50218, 39 0 0 0 0 0 0 0 + SGN-E744990 1820 525 564 C04HBa0103J09.2 139342 50220 50259 1 39, 525, 50220, 37 0 0 0 0 0 0 0 + SGN-E744990 1820 525 562 C04HBa0103J09.2 139342 1955 1992 1 37, 525, 1955, 37 0 0 0 0 0 0 0 + SGN-E744933 1596 306 343 C04HBa0103J09.2 139342 1955 1992 1 37, 306, 1955, 308 1 0 0 0 0 0 0 - SGN-E687666 790 0 309 C04HBa0103J09.2 139342 0 309 1 309, 481, 0, 66 1 0 0 0 0 0 0 + SGN-E578347 752 0 67 C04HBa0103J09.2 139342 5067 5134 1 67, 0, 5067, 328 0 0 0 0 0 1 630 - SGN-E318996 567 0 328 C04HBa0103J09.2 139342 0 958 2 250,78, 239,489, 0,880, 467 0 0 0 0 0 1 630 - SGN-E321683 599 0 467 C04HBa0103J09.2 139342 0 1097 2 250,217, 132,382, 0,880, 427 1 0 2 1 1 2 1413 - SGN-E320840 431 0 431 C04HBa0103J09.2 139342 1076 2919 4 47,41,87,255, 0,47,89,176, 1076,1717,1758,2664, 308 0 0 0 0 0 0 0 - SGN-E323051 574 0 308 C04HBa0103J09.2 139342 0 308 1 308, 266, 0, 65 1 0 0 2 2 2 3 + SGN-E392631 306 215 283 C04HBa0103J09.2 139342 127489 127558 5 5,14,12,20,15, 215,220,234,247,268, 127489,127496,127511,127523,127543, 77 2 0 0 1 1 3 4 + SGN-E395080 659 568 648 C04HBa0103J09.2 139342 127489 127572 5 5,14,32,19,9, 568,573,587,620,639, 127489,127496,127511,127543,127563, 51 1 0 0 1 1 0 0 + SGN-E538999 585 445 498 C04HBa0103J09.2 139342 50218 50270 2 40,12, 445,486, 50218,50258, 43 0 0 0 0 0 0 0 + SGN-E538999 585 441 484 C04HBa0103J09.2 139342 1949 1992 1 43, 441, 1949, 51 1 0 0 1 1 0 0 + SGN-E539002 585 445 498 C04HBa0103J09.2 139342 50218 50270 2 40,12, 445,486, 50218,50258, 43 0 0 0 0 0 0 0 + SGN-E539002 585 441 484 C04HBa0103J09.2 139342 1949 1992 1 43, 441, 1949, 34 0 0 0 0 0 0 0 + SGN-E548413 835 743 777 C04HBa0103J09.2 139342 1958 1992 1 34, 743, 1958, 350 0 0 0 1 1 1 630 - SGN-E241340 520 0 351 C04HBa0103J09.2 139342 0 980 3 55,195,100, 169,225,420, 0,55,880, 35 0 0 0 0 0 0 0 - SGN-E724581 557 28 63 C04HBa0103J09.2 139342 50222 50257 1 35, 494, 50222, 31 0 0 0 0 0 0 0 + SGN-E735271 553 100 131 C04HBa0103J09.2 139342 50226 50257 1 31, 100, 50226, 31 0 0 0 0 0 0 0 + SGN-E735271 553 100 131 C04HBa0103J09.2 139342 1961 1992 1 31, 100, 1961, 545 0 0 0 0 0 3 1241 - SGN-E701747 939 0 545 C04HBa0103J09.2 139342 0 1786 4 250,243,45,7, 394,644,887,932, 0,880,1717,1779, 41 0 0 0 0 0 0 0 + SGN-E243086 383 68 109 C04HBa0103J09.2 139342 50218 50259 1 41, 68, 50218, 40 0 0 0 0 0 0 0 + SGN-E243086 383 67 107 C04HBa0103J09.2 139342 1952 1992 1 40, 67, 1952, 41 0 0 0 0 0 0 0 + SGN-E247800 632 433 474 C04HBa0103J09.2 139342 50218 50259 1 41, 433, 50218, 41 0 0 0 0 0 0 0 + SGN-E248825 578 433 474 C04HBa0103J09.2 139342 50218 50259 1 41, 433, 50218, 41 0 0 0 0 0 0 0 + SGN-E248217 471 139 180 C04HBa0103J09.2 139342 50218 50259 1 41, 139, 50218, 409 17 0 0 0 0 0 0 + SGN-E251036 426 0 426 C04HBa0103J09.2 139342 133101 133527 1 426, 0, 133101, 41 0 0 0 0 0 0 0 + SGN-E257926 530 313 354 C04HBa0103J09.2 139342 50218 50259 1 41, 313, 50218, 40 0 0 0 0 0 0 0 + SGN-E257926 530 312 352 C04HBa0103J09.2 139342 1952 1992 1 40, 312, 1952, 41 0 0 0 0 0 0 0 + SGN-E266579 537 64 105 C04HBa0103J09.2 139342 50218 50259 1 41, 64, 50218, 41 0 0 0 0 0 0 0 + SGN-E265318 569 64 105 C04HBa0103J09.2 139342 50218 50259 1 41, 64, 50218, 95 1 0 0 0 0 0 0 - SGN-E221483 466 0 96 C04HBa0103J09.2 139342 0 96 1 96, 370, 0, 33 0 0 0 0 0 0 0 - SGN-E222044 403 0 33 C04HBa0103J09.2 139342 0 33 1 33, 370, 0, 41 0 0 0 0 0 0 0 + SGN-E272959 392 188 229 C04HBa0103J09.2 139342 50218 50259 1 41, 188, 50218, 41 0 0 0 0 0 0 0 + SGN-E270536 526 54 95 C04HBa0103J09.2 139342 50218 50259 1 41, 54, 50218, 41 0 0 0 0 0 0 0 + SGN-E277058 457 59 100 C04HBa0103J09.2 139342 50218 50259 1 41, 59, 50218, 40 0 0 0 0 0 0 0 + SGN-E277058 457 58 98 C04HBa0103J09.2 139342 1952 1992 1 40, 58, 1952, 298 1 0 0 0 0 2 1224 - SGN-E279507 299 0 299 C04HBa0103J09.2 139342 231 1754 3 19,243,37, 0,19,262, 231,880,1717, 51 1 0 0 1 1 0 0 + SGN-E279510 584 444 497 C04HBa0103J09.2 139342 50218 50270 2 40,12, 444,485, 50218,50258, 43 0 0 0 0 0 0 0 + SGN-E279510 584 440 483 C04HBa0103J09.2 139342 1949 1992 1 43, 440, 1949, 39 0 0 0 0 0 0 0 + SGN-E282130 351 154 193 C04HBa0103J09.2 139342 50220 50259 1 39, 154, 50220, 39 0 0 0 0 0 0 0 + SGN-E290690 646 536 575 C04HBa0103J09.2 139342 50220 50259 1 39, 536, 50220, 37 0 0 0 0 0 0 0 + SGN-E290690 646 536 573 C04HBa0103J09.2 139342 1955 1992 1 37, 536, 1955, 39 0 0 0 0 0 0 0 + SGN-E294577 535 259 298 C04HBa0103J09.2 139342 50220 50259 1 39, 259, 50220, 37 0 0 0 0 0 0 0 + SGN-E294577 535 259 296 C04HBa0103J09.2 139342 1955 1992 1 37, 259, 1955, 489 2 0 0 0 0 2 1413 - SGN-E304475 491 0 491 C04HBa0103J09.2 139342 1086 2990 3 37,128,326, 0,37,165, 1086,1717,2664, 708 0 0 0 0 0 3 2043 - SGN-E332119 715 0 708 C04HBa0103J09.2 139342 0 2751 4 250,243,128,87, 7,257,500,628, 0,880,1717,2664, 704 2 0 2 0 0 3 2043 - SGN-E332051 719 0 708 C04HBa0103J09.2 139342 0 2751 4 250,243,128,87, 11,261,504,632, 0,880,1717,2664, 41 0 0 0 0 0 0 0 + SGN-E333840 653 519 560 C04HBa0103J09.2 139342 50218 50259 1 41, 519, 50218, 39 0 0 0 0 0 0 0 + SGN-E333840 653 519 558 C04HBa0103J09.2 139342 1953 1992 1 39, 519, 1953, 442 0 0 0 0 0 2 1413 - SGN-E327459 442 0 442 C04HBa0103J09.2 139342 1049 2904 3 74,128,240, 0,74,202, 1049,1717,2664, 680 0 0 1 0 0 3 2043 - SGN-E327471 682 0 681 C04HBa0103J09.2 139342 179 2903 4 71,243,128,239, 1,72,315,443, 179,880,1717,2664, 404 0 0 1 0 0 2 1413 - SGN-E325363 405 0 405 C04HBa0103J09.2 139342 1074 2892 3 49,128,228, 0,49,177, 1074,1717,2664, 612 2 0 0 0 0 2 1413 - SGN-E327717 625 0 614 C04HBa0103J09.2 139342 880 2907 3 243,128,243, 11,254,382, 880,1717,2664, 524 2 0 1 0 0 2 1413 - SGN-E328349 527 0 527 C04HBa0103J09.2 139342 968 2908 3 155,128,244, 0,155,283, 968,1717,2664, 630 5 0 1 0 0 3 2043 - SGN-E328083 636 0 636 C04HBa0103J09.2 139342 229 2908 4 21,243,128,244, 0,21,264,392, 229,880,1717,2664, 706 0 0 0 0 0 3 2043 - SGN-E329111 706 0 706 C04HBa0103J09.2 139342 176 2925 4 74,243,128,261, 0,74,317,445, 176,880,1717,2664, 582 0 0 0 0 0 3 2043 - SGN-E323586 582 0 582 C04HBa0103J09.2 139342 82 2707 4 168,243,128,43, 0,168,411,539, 82,880,1717,2664, 349 1 0 0 1 1 1 594 - SGN-E324095 367 0 351 C04HBa0103J09.2 139342 880 1824 3 243,88,19, 16,259,348, 880,1717,1805, 417 0 0 0 0 0 2 1413 - SGN-E324143 417 0 417 C04HBa0103J09.2 139342 1095 2925 3 28,128,261, 0,28,156, 1095,1717,2664, 41 0 0 0 0 0 0 0 + SGN-E313995 539 482 523 C04HBa0103J09.2 139342 50218 50259 1 41, 482, 50218, 40 0 0 0 0 0 0 0 + SGN-E316335 629 46 86 C04HBa0103J09.2 139342 1952 1992 1 40, 46, 1952, 35 3 0 0 0 0 0 0 + SGN-E337975 379 324 362 C04HBa0103J09.2 139342 138129 138167 1 38, 324, 138129, 47 1 0 0 0 0 0 0 + SGN-E338374 466 410 458 C04HBa0103J09.2 139342 1944 1992 1 48, 410, 1944, 48 0 0 0 0 0 0 0 + SGN-E335434 448 363 411 C04HBa0103J09.2 139342 1944 1992 1 48, 363, 1944, 41 0 0 0 0 0 0 0 + SGN-E335434 448 372 413 C04HBa0103J09.2 139342 50218 50259 1 41, 372, 50218, 48 0 0 0 0 0 0 0 + SGN-E336439 424 330 378 C04HBa0103J09.2 139342 1944 1992 1 48, 330, 1944, 41 0 0 0 0 0 0 0 + SGN-E336439 424 339 380 C04HBa0103J09.2 139342 50218 50259 1 41, 339, 50218, 650 0 0 3 0 0 2 1413 - SGN-E345453 671 0 653 C04HBa0103J09.2 139342 880 2946 3 243,128,282, 18,261,389, 880,1717,2664, 631 0 0 1 0 0 2 1413 - SGN-E345735 644 0 632 C04HBa0103J09.2 139342 880 2925 3 243,128,261, 12,255,383, 880,1717,2664, 41 0 0 0 0 0 0 0 + SGN-E345091 728 486 527 C04HBa0103J09.2 139342 50218 50259 1 41, 486, 50218, 40 0 0 0 0 0 0 0 + SGN-E345091 728 485 525 C04HBa0103J09.2 139342 1952 1992 1 40, 485, 1952, 144 0 0 0 0 0 0 0 - SGN-E346507 640 0 144 C04HBa0103J09.2 139342 0 144 1 144, 496, 0, 41 0 0 0 0 0 0 0 + SGN-E346666 721 182 223 C04HBa0103J09.2 139342 50218 50259 1 41, 182, 50218, 679 0 0 2 1 1 3 2044 - SGN-E347363 682 0 682 C04HBa0103J09.2 139342 180 2905 5 16,57,239,128,241, 0,17,74,313,441, 180,196,884,1717,2664, 681 2 0 1 5 7 5 2046 - SGN-E342478 691 0 691 C04HBa0103J09.2 139342 37 2767 10 15,13,28,42,60,52,229,14,128,103, 0,16,30,61,104,164,216,446,460,588, 37,52,65,95,137,198,880,1109,1717,2664, 44 0 0 0 0 0 0 0 + SGN-E349548 618 124 168 C04HBa0103J09.2 139342 1942 1986 1 44, 124, 1942,