psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 1959 2 0 0 0 0 7 1547 + SGN-E745613 1978 2 1963 C04HBa0128L09.1 87881 59242 62750 8 434,112,175,169,219,276,279,297, 2,436,548,723,892,1111,1387,1666, 59242,59995,60231,60642,61100,61420,62087,62453, 462 6 0 0 0 0 1 87 - SGN-E554105 490 22 490 C04HBa0128L09.1 87881 62208 62763 2 158,310, 0,158, 62208,62453, 747 2 0 0 0 0 2 478 - SGN-E555488 761 12 761 C04HBa0128L09.1 87881 61533 62760 3 163,279,307, 0,163,442, 61533,62087,62453, 189 11 0 0 1 6 2 3 - SGN-E204223 580 374 580 C04HBa0128L09.1 87881 19959 20162 3 31,48,121, 0,37,85, 19959,19991,20041, 393 0 0 0 0 0 1 107 - SGN-E205055 393 0 393 C04HBa0128L09.1 87881 28036 28536 2 378,15, 0,378, 28036,28521, 35 2 0 0 0 0 0 0 - SGN-E204092 457 416 453 C04HBa0128L09.1 87881 20702 20739 1 37, 4, 20702, 528 3 0 0 0 0 2 2343 - SGN-E209977 531 0 531 C04HBa0128L09.1 87881 42972 45846 3 36,153,342, 0,36,189, 42972,45113,45504, 533 1 0 0 0 0 0 0 - SGN-E208859 534 0 534 C04HBa0128L09.1 87881 27809 28343 1 534, 0, 27809, 606 0 0 0 0 0 3 299 - SGN-E202457 606 0 606 C04HBa0128L09.1 87881 28331 29236 4 83,114,291,118, 0,83,197,488, 28331,28521,28730,29118, 687 1 0 1 0 0 3 300 - SGN-E213969 689 0 689 C04HBa0128L09.1 87881 28574 29563 4 61,291,309,28, 0,61,352,661, 28574,28730,29118,29535, 46 1 0 0 1 15 0 0 - SGN-E577899 392 0 62 C04HBa0128L09.1 87881 20623 20670 2 12,35, 330,357, 20623,20635, 100 5 0 0 0 0 0 0 + SGN-E577960 387 281 386 C04HBa0128L09.1 87881 19878 19983 1 105, 281, 19878, 664 15 0 1 3 48 5 1883 + SGN-E578064 739 11 739 C04HBa0128L09.1 87881 46990 49553 7 72,28,85,160,87,196,52, 11,85,122,244,404,491,687, 46990,47062,47093,47183,48625,48824,49501, 226 16 0 0 1 10 2 472 - SGN-E578392 506 253 505 C04HBa0128L09.1 87881 20030 20744 3 9,121,112, 1,10,141, 20030,20041,20632, 652 1 0 0 0 0 0 0 + SGN-E321387 653 0 653 C04HBa0128L09.1 87881 61437 62090 1 653, 0, 61437, 404 6 0 0 0 0 1 481 - SGN-E323262 410 0 410 C04HBa0128L09.1 87881 48845 49736 2 175,235, 0,175, 48845,49501, 571 2 0 0 0 0 0 0 + SGN-E316754 573 0 573 C04HBa0128L09.1 87881 14259 14832 1 573, 0, 14259, 484 0 0 0 0 0 0 0 + SGN-E310623 493 9 493 C04HBa0128L09.1 87881 14203 14687 1 484, 9, 14203, 43 1 0 0 1 1 0 0 - SGN-E368336 765 706 751 C04HBa0128L09.1 87881 51843 51887 2 35,9, 14,50, 51843,51878, 307 10 0 0 0 0 0 0 - SGN-E369369 349 0 317 C04HBa0128L09.1 87881 27136 27453 1 317, 32, 27136, 683 0 0 0 0 0 0 0 - SGN-E369370 683 0 683 C04HBa0128L09.1 87881 27619 28302 1 683, 0, 27619, 726 2 0 0 0 0 2 478 + SGN-E373913 739 0 728 C04HBa0128L09.1 87881 61544 62750 3 152,279,297, 0,152,431, 61544,62087,62453, 670 2 0 0 0 0 3 781 + SGN-E373914 672 0 672 C04HBa0128L09.1 87881 60786 62239 4 25,219,276,152, 0,25,244,520, 60786,61100,61420,62087, 166 11 0 0 0 0 1 2 - SGN-E374844 554 374 551 C04HBa0128L09.1 87881 19983 20162 2 56,121, 3,59, 19983,20041, 502 2 0 0 0 0 0 0 - SGN-E376885 504 0 504 C04HBa0128L09.1 87881 27449 27953 1 504, 0, 27449, 238 17 0 0 1 6 2 3 - SGN-E377238 484 0 261 C04HBa0128L09.1 87881 19876 20134 3 114,48,93, 223,343,391, 19876,19991,20041, 47 1 0 0 0 0 0 0 + SGN-E377316 765 690 738 C04HBa0128L09.1 87881 19920 19968 1 48, 690, 19920, 34 1 0 0 0 0 0 0 - SGN-E377799 641 96 131 C04HBa0128L09.1 87881 37124 37159 1 35, 510, 37124, 34 1 0 0 0 0 0 0 - SGN-E377800 605 353 388 C04HBa0128L09.1 87881 37124 37159 1 35, 217, 37124, 75 4 0 0 0 0 1 37 - SGN-E391901 346 267 346 C04HBa0128L09.1 87881 20623 20739 2 9,70, 0,9, 20623,20669, 36 1 0 0 0 0 0 0 - SGN-E398336 459 418 455 C04HBa0128L09.1 87881 20702 20739 1 37, 4, 20702, 135 9 0 0 1 9 4 15 - SGN-E542827 624 303 456 C04HBa0128L09.1 87881 36121 36280 5 26,74,4,35,5, 168,194,268,281,316, 36121,36151,36226,36238,36275, 176 11 0 0 2 13 2 9 + SGN-E544203 748 526 726 C04HBa0128L09.1 87881 19887 20083 4 96,40,8,43, 526,626,675,683, 19887,19983,20029,20040, 44 1 0 0 0 0 0 0 + SGN-E546063 812 739 784 C04HBa0128L09.1 87881 20635 20680 1 45, 739, 20635, 38 0 0 0 0 0 2 40 - SGN-E546775 590 64 102 C04HBa0128L09.1 87881 23310 23388 3 8,16,14, 488,496,512, 23310,23322,23374, 52 2 0 0 0 0 0 0 - SGN-E547334 453 377 431 C04HBa0128L09.1 87881 20690 20744 1 54, 22, 20690, 52 2 0 0 0 0 0 0 - SGN-E547335 453 377 431 C04HBa0128L09.1 87881 20690 20744 1 54, 22, 20690, 34 1 0 0 0 0 0 0 - SGN-E235539 637 353 388 C04HBa0128L09.1 87881 37124 37159 1 35, 249, 37124, 238 17 0 0 1 6 2 3 - SGN-E233594 310 0 261 C04HBa0128L09.1 87881 19876 20134 3 114,48,93, 49,169,217, 19876,19991,20041, 238 17 0 0 1 6 2 3 - SGN-E233735 514 0 261 C04HBa0128L09.1 87881 19876 20134 3 114,48,93, 253,373,421, 19876,19991,20041, 237 17 0 0 1 6 2 3 - SGN-E237992 666 0 260 C04HBa0128L09.1 87881 19876 20133 3 114,48,92, 406,526,574, 19876,19991,20041, 80 7 0 0 0 0 0 0 + SGN-E240526 430 339 426 C04HBa0128L09.1 87881 19881 19968 1 87, 339, 19881, 34 1 0 0 0 0 0 0 - SGN-E240640 484 353 388 C04HBa0128L09.1 87881 37124 37159 1 35, 96, 37124, 238 17 0 0 1 6 2 3 - SGN-E240879 434 0 261 C04HBa0128L09.1 87881 19876 20134 3 114,48,93, 173,293,341, 19876,19991,20041, 395 0 0 0 0 0 0 0 - SGN-E228142 395 0 395 C04HBa0128L09.1 87881 27558 27953 1 395, 0, 27558, 238 17 0 0 1 6 2 3 - SGN-E242674 528 0 261 C04HBa0128L09.1 87881 19876 20134 3 114,48,93, 267,387,435, 19876,19991,20041, 34 1 0 0 0 0 0 0 - SGN-E242493 531 353 388 C04HBa0128L09.1 87881 37124 37159 1 35, 143, 37124, 34 1 0 0 0 0 0 0 - SGN-E242980 483 353 388 C04HBa0128L09.1 87881 37124 37159 1 35, 95, 37124, 480 0 0 0 0 0 0 0 - SGN-E231226 480 0 480 C04HBa0128L09.1 87881 27473 27953 1 480, 0, 27473, 238 17 0 0 1 6 2 3 - SGN-E233074 643 0 261 C04HBa0128L09.1 87881 19876 20134 3 114,48,93, 382,502,550, 19876,19991,20041, 340 10 0 0 0 0 2 443 + SGN-E725815 350 0 350 C04HBa0128L09.1 87881 59475 60268 3 201,112,37, 0,201,313, 59475,59995,60231, 364 16 0 0 2 7 2 325 + SGN-E729017 387 0 387 C04HBa0128L09.1 87881 59391 60096 5 24,215,8,32,101, 0,25,246,254,286, 59391,59415,59630,59644,59995, 820 23 0 3 4 61 5 1883 - SGN-E729646 907 0 907 C04HBa0128L09.1 87881 47015 49744 8 47,28,85,160,87,196,227,16, 0,49,86,208,368,455,651,891, 47015,47062,47093,47183,48625,48824,49501,49728, 869 6 0 1 0 0 3 579 + SGN-E730728 882 6 882 C04HBa0128L09.1 87881 61144 62599 4 175,276,279,146, 6,181,457,736, 61144,61420,62087,62453, 768 12 0 0 1 4 3 679 + SGN-E730988 792 8 792 C04HBa0128L09.1 87881 59265 60724 5 85,326,112,175,82, 8,97,423,535,710, 59265,59350,59995,60231,60642, 39 1 0 0 0 0 0 0 - SGN-E719799 683 558 598 C04HBa0128L09.1 87881 20699 20739 1 40, 85, 20699, 36 1 0 0 0 0 0 0 - SGN-E721929 648 558 595 C04HBa0128L09.1 87881 20702 20739 1 37, 53, 20702, 760 1 0 0 0 0 0 0 - SGN-E739566 766 5 766 C04HBa0128L09.1 87881 29853 30614 1 761, 0, 29853, 656 5 0 0 2 2 3 299 - SGN-E697399 667 4 667 C04HBa0128L09.1 87881 28336 29296 6 19,28,31,114,291,178, 0,20,49,80,194,485, 28336,28355,28383,28521,28730,29118, 900 4 0 0 1 8 5 1026 + SGN-E703864 912 0 912 C04HBa0128L09.1 87881 60385 62315 6 21,159,221,276,161,66, 0,21,188,409,685,846, 60385,60642,61098,61420,62087,62249, 828 4 0 0 0 0 4 1017 + SGN-E707296 839 7 839 C04HBa0128L09.1 87881 60296 62145 5 110,169,219,276,58, 7,117,286,505,781, 60296,60642,61100,61420,62087, 146 6 0 0 0 0 2 6 + SGN-E243215 460 80 232 C04HBa0128L09.1 87881 36123 36281 3 90,56,6, 80,170,226, 36123,36214,36275, 295 1 0 0 1 1 1 290 + SGN-E252792 297 0 297 C04HBa0128L09.1 87881 60716 61302 2 94,202, 0,95, 60716,61100, 575 0 0 0 0 0 0 0 - SGN-E255368 575 0 575 C04HBa0128L09.1 87881 27727 28302 1 575, 0, 27727, 53 3 0 0 0 0 0 0 - SGN-E256217 514 0 56 C04HBa0128L09.1 87881 19881 19937 1 56, 458, 19881, 618 0 0 0 0 0 3 299 - SGN-E256317 618 0 618 C04HBa0128L09.1 87881 28295 29212 4 119,114,291,94, 0,119,233,524, 28295,28521,28730,29118, 721 3 0 0 1 1 4 1934 + SGN-E262584 725 0 725 C04HBa0128L09.1 87881 78590 81248 6 282,56,286,81,4,15, 0,282,338,624,705,710, 78590,80269,80860,81147,81229,81233, 337 2 0 0 0 0 1 1397 + SGN-E262700 347 0 339 C04HBa0128L09.1 87881 78590 80326 2 282,57, 0,282, 78590,80269, 475 16 0 0 0 0 2 1932 + SGN-E262802 491 0 491 C04HBa0128L09.1 87881 78590 81013 3 282,56,153, 0,282,338, 78590,80269,80860, 564 2 0 0 0 0 0 0 + SGN-E266368 571 5 571 C04HBa0128L09.1 87881 27104 27670 1 566, 5, 27104, 220 13 0 0 0 0 0 0 + SGN-E217451 263 0 233 C04HBa0128L09.1 87881 18481 18714 1 233, 0, 18481, 327 2 0 0 0 0 0 0 + SGN-E217276 359 0 329 C04HBa0128L09.1 87881 18385 18714 1 329, 0, 18385, 56 1 0 0 1 11 1 1 + SGN-E217478 385 238 306 C04HBa0128L09.1 87881 19920 19978 2 48,9, 238,297, 19920,19969, 401 0 0 0 0 0 1 87 + SGN-E217860 418 0 401 C04HBa0128L09.1 87881 62262 62750 2 104,297, 0,104, 62262,62453, 401 0 0 0 1 1 1 87 + SGN-E218216 419 0 402 C04HBa0128L09.1 87881 62262 62750 3 70,34,297, 0,71,105, 62262,62332,62453, 56 1 0 0 1 11 1 1 + SGN-E228654 468 321 389 C04HBa0128L09.1 87881 19920 19978 2 48,9, 321,380, 19920,19969, 407 1 0 0 0 0 1 87 + SGN-E230612 428 0 408 C04HBa0128L09.1 87881 62262 62757 2 104,304, 0,104, 62262,62453, 44 1 0 0 0 0 0 0 - SGN-E233998 377 314 359 C04HBa0128L09.1 87881 20699 20744 1 45, 18, 20699, 43 1 0 0 0 0 0 0 - SGN-E234253 351 288 332 C04HBa0128L09.1 87881 20700 20744 1 44, 19, 20700, 258 13 0 0 0 0 0 0 + SGN-E287788 271 0 271 C04HBa0128L09.1 87881 62452 62723 1 271, 0, 62452, 419 1 0 0 0 0 2 390 + SGN-E298627 420 0 420 C04HBa0128L09.1 87881 60786 61596 3 25,219,176, 0,25,244, 60786,61100,61420, 571 0 0 0 0 0 2 2343 - SGN-E301272 571 0 571 C04HBa0128L09.1 87881 42633 45547 3 375,153,43, 0,375,528, 42633,45113,45504, 614 0 0 0 0 0 2 2343 - SGN-E303021 614 0 614 C04HBa0128L09.1 87881 42967 45924 3 41,153,420, 0,41,194, 42967,45113,45504, 491 0 0 0 1 4 4 682 + SGN-E307571 495 0 495 C04HBa0128L09.1 87881 59542 60715 5 23,108,112,175,73, 0,27,135,247,422, 59542,59568,59995,60231,60642, 39 1 0 0 0 0 0 0 + SGN-E334244 713 425 465 C04HBa0128L09.1 87881 66192 66232 1 40, 425, 66192, 718 0 0 0 0 0 4 968 + SGN-E334526 718 0 718 C04HBa0128L09.1 87881 59524 61210 5 152,112,175,169,110, 0,152,264,439,608, 59524,59995,60231,60642,61100, 43 0 0 0 1 1 1 60808 - SGN-E333993 355 122 166 C04HBa0128L09.1 87881 23373 84224 2 21,22, 189,211, 23373,84202, 371 1 0 0 1 1 1 320 + SGN-E330700 373 0 373 C04HBa0128L09.1 87881 59364 60056 2 308,64, 0,309, 59364,59992, 378 13 0 0 0 0 1 319 + SGN-E330647 397 6 397 C04HBa0128L09.1 87881 59294 60004 2 382,9, 6,388, 59294,59995, 708 0 0 0 0 0 2 443 + SGN-E327540 711 0 708 C04HBa0128L09.1 87881 59253 60404 3 423,112,173, 0,423,535, 59253,59995,60231, 446 0 0 0 0 0 1 319 + SGN-E315613 446 0 446 C04HBa0128L09.1 87881 59253 60018 2 423,23, 0,423, 59253,59995, 413 1 0 0 0 0 2 443 + SGN-E315488 414 0 414 C04HBa0128L09.1 87881 59423 60280 3 253,112,49, 0,253,365, 59423,59995,60231, 775 6 0 4 1 2 4 682 + SGN-E316482 787 0 787 C04HBa0128L09.1 87881 59210 60677 5 466,112,91,81,35, 0,466,578,669,752, 59210,59995,60231,60323,60642, 373 0 0 0 0 0 0 0 + SGN-E309496 373 0 373 C04HBa0128L09.1 87881 59253 59626 1 373, 0, 59253, 727 5 0 0 0 0 5 682 + SGN-E317962 732 0 732 C04HBa0128L09.1 87881 59266 60680 6 410,112,91,82,14,23, 0,410,522,613,695,709, 59266,59995,60231,60323,60642,60657, 727 4 0 0 0 0 6 682 + SGN-E317996 731 0 731 C04HBa0128L09.1 87881 59266 60679 7 410,112,94,31,16,31,37, 0,410,522,616,647,663,694, 59266,59995,60231,60326,60358,60375,60642, 389 0 0 0 0 0 1 319 + SGN-E336248 389 0 389 C04HBa0128L09.1 87881 59296 60004 2 380,9, 0,380, 59296,59995, 485 1 0 0 0 0 1 319 + SGN-E337916 486 0 486 C04HBa0128L09.1 87881 59283 60088 2 393,93, 0,393, 59283,59995, 562 3 0 0 0 0 3 1853 + SGN-E338663 565 0 565 C04HBa0128L09.1 87881 76435 78853 4 127,40,42,356, 0,127,167,209, 76435,76701,77391,78497, 575 0 0 0 0 0 2 443 + SGN-E340292 575 0 575 C04HBa0128L09.1 87881 59362 60380 3 314,112,149, 0,314,426, 59362,59995,60231, 42 0 0 0 0 0 1 28829 + SGN-E346864 702 453 495 C04HBa0128L09.1 87881 23374 52245 2 20,22, 453,473, 23374,52223, 76 6 0 0 0 0 0 0 + SGN-E353601 628 518 600 C04HBa0128L09.1 87881 20447 20529 1 82, 518, 20447, 51 4 0 0 0 0 1 7 + SGN-E357331 577 356 411 C04HBa0128L09.1 87881 176 238 2 6,49, 356,362, 176,189, 389 10 0 0 1 4 1 1 + SGN-E366696 403 0 403 C04HBa0128L09.1 87881 59266 59666 3 84,28,287, 0,88,116, 59266,59350,59379, 524 9 0 0 0 0 3 444 + SGN-E366202 533 0 533 C04HBa0128L09.1 87881 59373 60350 4 4,298,112,119, 0,4,302,414, 59373,59378,59995,60231, 374 14 0 0 1 8 1 87 + SGN-E366203 430 0 396 C04HBa0128L09.1 87881 62317 62792 3 49,239,100, 0,49,296, 62317,62453,62692, 52 2 0 0 0 0 0 0 - SGN-E362032 430 376 430 C04HBa0128L09.1 87881 20690 20744 1 54, 0, 20690, 38 0 0 0 0 0 2 40 - SGN-E362642 565 63 101 C04HBa0128L09.1 87881 23310 23388 3 8,16,14, 464,472,488, 23310,23322,23374, 507 18 0 0 3 10 1 87 + SGN-E689918 588 12 547 C04HBa0128L09.1 87881 62114 62726 5 38,127,87,242,31, 12,51,179,266,516, 62114,62152,62279,62453,62695, 549 9 0 0 1 8 1 87 + SGN-E693758 575 0 566 C04HBa0128L09.1 87881 62105 62750 3 261,242,55, 0,261,511, 62105,62453,62695, 360 9 0 0 1 8 2 88 + SGN-E693964 391 0 377 C04HBa0128L09.1 87881 62293 62750 4 73,242,45,9, 0,73,323,368, 62293,62453,62695,62741, 685 13 0 0 2 10 4 481 + SGN-E696001 717 0 708 C04HBa0128L09.1 87881 61571 62750 6 125,279,231,6,48,9, 0,125,404,642,651,699, 61571,62087,62453,62684,62692,62741, 550 26 0 0 3 28 4 706 + SGN-E692161 610 6 610 C04HBa0128L09.1 87881 59414 60696 5 261,10,101,150,54, 6,268,280,381,556, 59414,59995,60006,60231,60642, 526 6 0 0 3 19 4 98 + SGN-E696468 565 0 551 C04HBa0128L09.1 87881 62118 62748 6 248,231,6,21,19,7, 0,248,486,495,525,544, 62118,62453,62684,62692,62721,62741, 537 2 0 0 0 0 3 679 + SGN-E355831 539 0 539 C04HBa0128L09.1 87881 59546 60764 4 130,112,175,122, 0,130,242,417, 59546,59995,60231,60642, 432 4 0 0 0 0 3 649 + SGN-E359515 436 0 436 C04HBa0128L09.1 87881 60096 61181 4 11,175,169,81, 0,11,186,355, 60096,60231,60642,61100,