psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 177 11 0 0 2 10 3 1215 + SGN-E554824 806 143 341 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 143,153,252,330, 38557,38620,39612,39949, 149 8 0 0 2 10 2 1162 + SGN-E554999 726 0 167 C04HBa0204I09.1 139577 38641 39960 3 77,69,11, 0,78,156, 38641,39612,39949, 149 8 0 0 2 10 2 1162 + SGN-E551893 724 0 167 C04HBa0204I09.1 139577 38641 39960 3 77,69,11, 0,78,156, 38641,39612,39949, 271 12 0 0 2 8 3 43 + SGN-E204223 580 289 580 C04HBa0204I09.1 139577 52022 52348 4 16,24,218,25, 289,310,334,555, 52022,52052,52104,52323, 338 27 0 1 1 28 3 2717 + SGN-E204728 395 1 395 C04HBa0204I09.1 139577 38617 41700 4 71,72,120,103, 1,100,172,292, 38617,39609,39870,41597, 200 11 0 0 0 0 1 893 + SGN-E203474 281 70 281 C04HBa0204I09.1 139577 38579 39683 2 138,73, 70,208, 38579,39610, 164 11 0 0 1 28 1 921 + SGN-E203874 203 0 203 C04HBa0204I09.1 139577 38576 39672 2 112,63, 0,140, 38576,39609, 37 2 0 0 0 0 0 0 + SGN-E204092 457 414 453 C04HBa0204I09.1 139577 52025 52064 1 39, 414, 52025, 76 4 0 0 1 9 1 268 - SGN-E211989 602 467 556 C04HBa0204I09.1 139577 39612 39960 2 69,11, 46,124, 39612,39949, 60 2 0 0 0 0 1 3 + SGN-E577899 392 0 62 C04HBa0204I09.1 139577 52096 52161 2 57,5, 0,57, 52096,52156, 92 4 0 0 0 0 0 0 - SGN-E577960 387 291 387 C04HBa0204I09.1 139577 52323 52419 1 96, 0, 52323, 237 15 0 0 0 0 0 0 + SGN-E578392 506 253 505 C04HBa0204I09.1 139577 52022 52274 1 252, 253, 52022, 177 11 0 0 2 10 3 1215 + SGN-E555872 915 143 341 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 143,153,252,330, 38557,38620,39612,39949, 54 2 0 0 1 9 1 268 + SGN-E308335 602 0 65 C04HBa0204I09.1 139577 39636 39960 2 45,11, 0,54, 39636,39949, 410 28 0 0 1 13 3 2702 + SGN-E371224 678 77 528 C04HBa0204I09.1 139577 38579 41719 4 138,71,113,116, 77,215,286,412, 38579,39610,39870,41603, 245 13 0 0 1 5 2 42 + SGN-E374844 554 289 552 C04HBa0204I09.1 139577 52022 52322 3 16,24,218, 289,310,334, 52022,52052,52104, 109 5 0 0 1 1 1 1 - SGN-E376754 662 540 655 C04HBa0204I09.1 139577 52304 52419 3 20,55,39, 7,27,83, 52304,52325,52380, 225 14 0 0 1 3 1 1 + SGN-E377238 484 0 242 C04HBa0204I09.1 139577 52172 52412 2 150,89, 0,153, 52172,52323, 59 2 0 0 0 0 1 21 - SGN-E377316 765 679 740 C04HBa0204I09.1 139577 52337 52419 2 39,22, 25,64, 52337,52397, 75 5 0 0 0 0 1 167 + SGN-E391901 346 266 346 C04HBa0204I09.1 139577 52026 52273 2 72,8, 266,338, 52026,52265, 38 1 0 0 0 0 0 0 + SGN-E398336 459 416 455 C04HBa0204I09.1 139577 52025 52064 1 39, 416, 52025, 85 4 0 0 0 0 0 0 - SGN-E546063 812 695 784 C04HBa0204I09.1 139577 52086 52175 1 89, 28, 52086, 77 3 0 0 1 9 1 268 + SGN-E546312 735 47 136 C04HBa0204I09.1 139577 39612 39960 2 69,11, 47,125, 39612,39949, 53 1 0 0 0 0 0 0 + SGN-E547334 453 377 431 C04HBa0204I09.1 139577 52022 52076 1 54, 377, 52022, 53 1 0 0 0 0 0 0 + SGN-E547335 453 377 431 C04HBa0204I09.1 139577 52022 52076 1 54, 377, 52022, 225 14 0 0 1 3 1 1 + SGN-E233594 310 0 242 C04HBa0204I09.1 139577 52172 52412 2 150,89, 0,153, 52172,52323, 225 14 0 0 1 3 1 1 + SGN-E233735 514 0 242 C04HBa0204I09.1 139577 52172 52412 2 150,89, 0,153, 52172,52323, 209 11 0 0 1 3 1 1 + SGN-E237992 666 18 241 C04HBa0204I09.1 139577 52191 52412 2 131,89, 18,152, 52191,52323, 79 5 0 0 0 0 0 0 - SGN-E240526 430 346 430 C04HBa0204I09.1 139577 52335 52419 1 84, 0, 52335, 225 14 0 0 1 3 1 1 + SGN-E240879 434 0 242 C04HBa0204I09.1 139577 52172 52412 2 150,89, 0,153, 52172,52323, 320 22 0 0 2 51 3 2740 + SGN-E239933 402 0 393 C04HBa0204I09.1 139577 38610 41692 4 78,72,121,71, 0,106,178,322, 38610,39609,39870,41621, 131 9 0 0 0 0 0 0 + SGN-E239976 225 73 213 C04HBa0204I09.1 139577 38579 38719 1 140, 73, 38579, 225 14 0 0 1 3 1 1 + SGN-E242674 528 0 242 C04HBa0204I09.1 139577 52172 52412 2 150,89, 0,153, 52172,52323, 153 9 0 0 2 10 2 1162 + SGN-E242574 609 0 172 C04HBa0204I09.1 139577 38636 39960 3 82,69,11, 0,83,161, 38636,39612,39949, 153 9 0 0 2 10 2 1162 + SGN-E244497 562 0 172 C04HBa0204I09.1 139577 38636 39960 3 82,69,11, 0,83,161, 38636,39612,39949, 346 27 0 0 1 28 3 2717 + SGN-E231291 409 8 409 C04HBa0204I09.1 139577 38608 41698 4 80,72,120,101, 8,116,188,308, 38608,39609,39870,41597, 225 14 0 0 1 3 1 1 + SGN-E233074 643 0 242 C04HBa0204I09.1 139577 52172 52412 2 150,89, 0,153, 52172,52323, 153 9 0 0 2 10 2 1162 + SGN-E232032 583 0 172 C04HBa0204I09.1 139577 38636 39960 3 82,69,11, 0,83,161, 38636,39612,39949, 77 3 0 0 1 9 1 268 + SGN-E717705 883 206 295 C04HBa0204I09.1 139577 39612 39960 2 69,11, 206,284, 39612,39949, 177 11 0 0 2 10 3 1215 + SGN-E718967 861 123 321 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 123,133,232,310, 38557,38620,39612,39949, 41 1 0 0 0 0 0 0 + SGN-E719799 683 556 598 C04HBa0204I09.1 139577 52025 52067 1 42, 556, 52025, 38 1 0 0 0 0 0 0 + SGN-E721929 648 556 595 C04HBa0204I09.1 139577 52025 52064 1 39, 556, 52025, 177 11 0 0 2 10 3 1215 + SGN-E723029 713 71 269 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 71,81,180,258, 38557,38620,39612,39949, 177 11 0 0 2 10 3 1215 + SGN-E724314 769 70 268 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 70,80,179,257, 38557,38620,39612,39949, 177 11 0 0 2 10 3 1215 + SGN-E724949 689 128 326 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 128,138,237,315, 38557,38620,39612,39949, 77 3 0 0 1 9 1 268 + SGN-E734999 654 6 95 C04HBa0204I09.1 139577 39612 39960 2 69,11, 6,84, 39612,39949, 177 11 0 0 2 10 3 1215 + SGN-E700290 917 140 338 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 140,150,249,327, 38557,38620,39612,39949, 76 4 0 0 1 9 1 268 + SGN-E704086 821 190 279 C04HBa0204I09.1 139577 39612 39960 2 69,11, 190,268, 39612,39949, 77 3 0 0 1 9 1 268 + SGN-E708910 555 6 95 C04HBa0204I09.1 139577 39612 39960 2 69,11, 6,84, 39612,39949, 177 11 0 0 2 10 3 1215 + SGN-E712541 858 134 332 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 134,144,243,321, 38557,38620,39612,39949, 177 11 0 0 2 10 3 1215 + SGN-E713070 857 134 332 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 134,144,243,321, 38557,38620,39612,39949, 177 11 0 0 2 10 3 1215 + SGN-E714132 870 121 319 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 121,131,230,308, 38557,38620,39612,39949, 132 7 0 0 2 10 2 1162 + SGN-E714607 732 6 155 C04HBa0204I09.1 139577 38659 39960 3 59,69,11, 6,66,144, 38659,39612,39949, 177 11 0 0 2 10 3 1215 + SGN-E246708 538 100 298 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 100,110,209,287, 38557,38620,39612,39949, 392 27 0 0 1 13 3 2702 + SGN-E247878 511 79 511 C04HBa0204I09.1 139577 38579 41700 4 138,71,113,97, 79,217,288,414, 38579,39610,39870,41603, 237 11 0 0 1 6 2 23 - SGN-E249253 618 364 618 C04HBa0204I09.1 139577 52148 52419 3 126,26,96, 0,132,158, 52148,52295,52323, 293 13 0 0 1 6 2 23 - SGN-E253695 540 228 540 C04HBa0204I09.1 139577 52090 52419 3 184,26,96, 0,190,216, 52090,52295,52323, 49 0 0 0 0 0 0 0 + SGN-E256217 514 0 49 C04HBa0204I09.1 139577 52370 52419 1 49, 0, 52370, 177 11 0 0 2 10 3 1215 + SGN-E265115 364 43 241 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 43,53,152,230, 38557,38620,39612,39949, 43 2 0 0 0 0 0 0 + SGN-E233998 377 314 359 C04HBa0204I09.1 139577 52022 52067 1 45, 314, 52022, 42 2 0 0 0 0 0 0 + SGN-E234253 351 288 332 C04HBa0204I09.1 139577 52022 52066 1 44, 288, 52022, 407 28 0 0 1 13 3 2702 + SGN-E271764 463 15 463 C04HBa0204I09.1 139577 38579 41716 4 138,71,113,113, 15,153,224,350, 38579,39610,39870,41603, 177 11 0 0 2 10 3 1215 + SGN-E273671 511 139 337 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 139,149,248,326, 38557,38620,39612,39949, 179 12 0 0 1 28 1 921 + SGN-E273799 266 47 266 C04HBa0204I09.1 139577 38558 39670 2 130,61, 47,205, 38558,39609, 177 11 0 0 2 10 3 1215 + SGN-E275255 489 110 308 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 110,120,219,297, 38557,38620,39612,39949, 100 8 0 0 0 0 1 53 + SGN-E281816 260 145 253 C04HBa0204I09.1 139577 38557 38718 2 10,98, 145,155, 38557,38620, 74 6 0 0 0 0 0 0 - SGN-E288033 401 291 371 C04HBa0204I09.1 139577 41639 41719 1 80, 30, 41639, 371 24 0 0 1 37 3 2726 + SGN-E293397 509 77 509 C04HBa0204I09.1 139577 38579 41700 4 138,71,113,73, 77,215,286,436, 38579,39610,39870,41627, 302 20 0 0 0 0 2 1082 + SGN-E296153 489 92 414 C04HBa0204I09.1 139577 38579 39983 3 138,71,113, 92,230,301, 38579,39610,39870, 177 11 0 0 2 10 3 1215 + SGN-E296780 539 157 355 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 157,167,266,344, 38557,38620,39612,39949, 298 24 0 0 0 0 2 1082 + SGN-E291250 458 80 402 C04HBa0204I09.1 139577 38579 39983 3 138,71,113, 80,218,289, 38579,39610,39870, 77 5 0 0 0 0 0 0 + SGN-E293838 159 77 159 C04HBa0204I09.1 139577 38579 38661 1 82, 77, 38579, 440 31 0 0 2 53 5 2814 + SGN-E297999 604 80 604 C04HBa0204I09.1 139577 38579 41864 6 138,71,113,116,6,27, 80,218,289,415,571,577, 38579,39610,39870,41603,41819,41837, 100 8 0 0 0 0 1 53 + SGN-E296610 446 169 277 C04HBa0204I09.1 139577 38557 38718 2 10,98, 169,179, 38557,38620, 100 8 0 0 0 0 1 53 + SGN-E295092 538 100 208 C04HBa0204I09.1 139577 38557 38718 2 10,98, 100,110, 38557,38620, 410 28 0 0 1 13 3 2702 + SGN-E303478 560 62 513 C04HBa0204I09.1 139577 38579 41719 4 138,71,113,116, 62,200,271,397, 38579,39610,39870,41603, 177 11 0 0 2 10 3 1215 + SGN-E338820 370 123 321 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 123,133,232,310, 38557,38620,39612,39949, 302 20 0 0 0 0 2 1082 + SGN-E335575 444 79 401 C04HBa0204I09.1 139577 38579 39983 3 138,71,113, 79,217,288, 38579,39610,39870, 445 31 0 0 2 53 5 2814 + SGN-E344699 599 56 585 C04HBa0204I09.1 139577 38579 41869 6 138,71,113,116,6,32, 56,194,265,391,547,553, 38579,39610,39870,41603,41819,41837, 466 32 0 1 3 107 6 2790 + SGN-E348425 699 77 683 C04HBa0204I09.1 139577 38579 41868 7 138,71,113,121,19,6,31, 77,215,286,412,599,646,652, 38579,39610,39870,41603,41784,41819,41837, 674 0 0 0 2 2 0 0 - SGN-E340751 676 0 676 C04HBa0204I09.1 139577 138894 139568 3 29,472,173, 0,30,503, 138894,138923,139395, 76 4 0 0 1 9 1 268 + SGN-E352860 635 13 102 C04HBa0204I09.1 139577 39612 39960 2 69,11, 13,91, 39612,39949, 441 30 0 0 2 53 6 2814 + SGN-E353182 601 77 601 C04HBa0204I09.1 139577 38579 41864 7 138,71,113,116,8,10,15, 77,215,286,412,568,576,586, 38579,39610,39870,41603,41819,41838,41849, 70 3 0 0 1 9 1 268 + SGN-E353187 615 0 82 C04HBa0204I09.1 139577 39619 39960 2 62,11, 0,71, 39619,39949, 409 29 0 0 1 13 3 2702 + SGN-E367162 544 54 505 C04HBa0204I09.1 139577 38579 41719 4 138,71,113,116, 54,192,263,389, 38579,39610,39870,41603, 53 1 0 0 0 0 0 0 + SGN-E362032 430 376 430 C04HBa0204I09.1 139577 52022 52076 1 54, 376, 52022, 246 15 0 0 0 0 2 1082 + SGN-E364458 331 70 331 C04HBa0204I09.1 139577 38579 39922 3 138,71,52, 70,208,279, 38579,39610,39870, 490 6 0 0 6 6 4 2690 + SGN-E360470 553 51 553 C04HBa0204I09.1 139577 38529 41715 11 7,6,81,18,6,55,14,71,33,87,118, 51,58,65,147,166,173,229,243,314,348,435, 38529,38537,38543,38624,38642,38648,38703,39610,39870,39903,41597, 177 11 0 0 2 10 3 1215 + SGN-E360441 507 59 257 C04HBa0204I09.1 139577 38557 39960 4 10,98,69,11, 59,69,168,246, 38557,38620,39612,39949, 373 4 0 0 0 0 3 1083 + SGN-E359985 386 9 386 C04HBa0204I09.1 139577 38529 39989 4 7,180,71,119, 9,16,196,267, 38529,38537,39610,39870,