FGENESH 2.4 Prediction of potential genes in Nicotiana_dicot genomic DNA Time : Thu May 24 19:55:07 2007 Seq name: C04HBa0029F16.1 CU302232.4 submitted_to_sgn_as:C04HBa0029F16 Length of sequence: 118288 Number of predicted genes 51 in +chain 34 in -chain 17 Number of predicted exons 78 in +chain 52 in -chain 26 Positions of predicted genes and exons: Variant 1 from 1, Score:605.130762 G Str Feature Start End Score ORF Len 1 - PolA 5929 -2.85 1 - 1 CDSl 6128 - 6157 -4.65 6128 - 6157 30 1 - 2 CDSf 6226 - 6327 14.71 6226 - 6327 102 2 + 1 CDSo 7681 - 7836 4.31 7681 - 7836 156 2 + PolA 8393 2.25 3 + 1 CDSo 9674 - 9790 6.30 9674 - 9790 117 3 + PolA 9838 2.25 4 + 1 CDSo 11760 - 11966 14.16 11760 - 11966 207 4 + PolA 12068 -2.75 5 + 1 CDSo 13521 - 13601 3.96 13521 - 13601 81 5 + PolA 13610 0.75 6 + 1 CDSo 13630 - 13773 1.90 13630 - 13773 144 6 + PolA 13960 2.25 7 - PolA 14129 2.25 7 - 1 CDSo 14331 - 14777 10.29 14331 - 14777 447 8 - PolA 16420 -0.55 8 - 1 CDSo 16621 - 16896 13.29 16621 - 16896 276 9 + 1 CDSf 17250 - 17291 -2.02 17250 - 17291 42 9 + 2 CDSl 17554 - 17934 60.55 17554 - 17934 381 9 + PolA 17949 -2.45 10 + 1 CDSo 18382 - 18558 19.79 18382 - 18558 177 10 + PolA 18602 -2.45 11 - PolA 18947 2.25 11 - 1 CDSo 18979 - 19137 5.07 18979 - 19137 159 12 - PolA 19896 0.75 12 - 1 CDSl 19909 - 20190 18.87 19909 - 20190 282 12 - 2 CDSi 20363 - 20574 6.83 20363 - 20572 210 12 - 3 CDSf 20615 - 20657 0.67 20616 - 20657 42 13 + 1 CDSo 20664 - 20750 0.74 20664 - 20750 87 13 + PolA 20808 2.25 14 + 1 CDSf 22129 - 22262 7.25 22129 - 22260 132 14 + 2 CDSl 22604 - 22655 -1.29 22605 - 22655 51 14 + PolA 22765 0.75 15 + 1 CDSo 36479 - 36586 0.81 36479 - 36586 108 15 + PolA 36626 2.25 16 + 1 CDSo 37196 - 37396 0.97 37196 - 37396 201 16 + PolA 37634 2.25 17 + 1 CDSo 51043 - 51294 14.30 51043 - 51294 252 17 + PolA 51376 -2.45 18 - PolA 51457 2.25 18 - 1 CDSo 51569 - 51715 5.86 51569 - 51715 147 19 + 1 CDSf 51922 - 51967 -1.77 51922 - 51966 45 19 + 2 CDSl 52268 - 52524 14.28 52270 - 52524 255 19 + PolA 52532 -4.15 20 - PolA 52730 2.25 20 - 1 CDSl 52785 - 52862 4.60 52785 - 52862 78 20 - 2 CDSf 53130 - 53156 9.84 53130 - 53156 27 21 + 1 CDSo 56382 - 56555 6.77 56382 - 56555 174 21 + PolA 56913 -0.55 22 + 1 CDSo 73085 - 73225 7.76 73085 - 73225 141 22 + PolA 73538 2.25 23 + 1 CDSo 76312 - 76407 -1.38 76312 - 76407 96 23 + PolA 76460 2.25 24 + 1 CDSo 76834 - 76941 8.46 76834 - 76941 108 24 + PolA 77154 0.75 25 + 1 CDSo 77218 - 77310 2.83 77218 - 77310 93 25 + PolA 77521 0.75 26 - PolA 78239 2.25 26 - 1 CDSo 78344 - 78439 2.83 78344 - 78439 96 27 - PolA 78494 -2.85 27 - 1 CDSo 78541 - 78849 10.01 78541 - 78849 309 28 - PolA 79615 0.75 28 - 1 CDSo 80195 - 80308 8.18 80195 - 80308 114 29 - PolA 85174 2.25 29 - 1 CDSl 85362 - 85429 1.24 85362 - 85427 66 29 - 2 CDSf 85538 - 85595 -1.26 85539 - 85595 57 30 - PolA 85625 0.75 30 - 1 CDSl 85724 - 85982 2.40 85724 - 85981 258 30 - 2 CDSf 86159 - 86238 2.08 86161 - 86238 78 31 + 1 CDSf 86549 - 86590 5.08 86549 - 86590 42 31 + 2 CDSi 86699 - 86773 5.43 86699 - 86773 75 31 + 3 CDSl 86863 - 86895 4.53 86863 - 86895 33 31 + PolA 86916 -5.55 32 + 1 CDSo 90097 - 90222 0.21 90097 - 90222 126 32 + PolA 90290 0.75 33 + 1 CDSf 90352 - 90599 10.16 90352 - 90597 246 33 + 2 CDSl 90644 - 90932 14.71 90645 - 90932 288 33 + PolA 90955 0.75 34 + 1 CDSf 92777 - 92882 -1.41 92777 - 92881 105 34 + 2 CDSi 92973 - 93168 16.40 92975 - 93166 192 34 + 3 CDSl 93741 - 93765 3.17 93742 - 93765 24 34 + PolA 93888 -0.75 35 - PolA 93973 2.25 35 - 1 CDSo 94094 - 94216 12.11 94094 - 94216 123 36 + 1 CDSf 94511 - 94868 44.31 94511 - 94867 357 36 + 2 CDSl 95752 - 95969 7.55 95754 - 95969 216 36 + PolA 96105 -2.85 37 + 1 CDSf 96280 - 96431 7.50 96280 - 96429 150 37 + 2 CDSl 96868 - 96913 -3.19 96869 - 96913 45 37 + PolA 97052 0.75 38 - PolA 97614 0.75 38 - 1 CDSl 97836 - 97865 2.94 97836 - 97865 30 38 - 2 CDSf 98413 - 98475 3.14 98413 - 98475 63 39 + 1 CDSo 99437 - 99580 5.23 99437 - 99580 144 39 + PolA 99624 -2.85 40 - PolA 99813 0.75 40 - 1 CDSo 100223 - 100414 10.03 100223 - 100414 192 41 + 1 CDSo 100425 - 100583 9.95 100425 - 100583 159 41 + PolA 100699 2.25 42 + 1 CDSo 101210 - 101317 5.82 101210 - 101317 108 42 + PolA 101376 0.75 43 + 1 CDSo 105079 - 105384 1.57 105079 - 105384 306 43 + PolA 105464 2.25 44 + 1 CDSo 106142 - 106417 9.69 106142 - 106417 276 44 + PolA 106425 2.25 45 - PolA 106550 0.75 45 - 1 CDSl 106644 - 106697 -0.76 106644 - 106697 54 45 - 2 CDSi 107405 - 107471 9.55 107405 - 107470 66 45 - 3 CDSf 108321 - 108412 1.28 108323 - 108412 90 46 + 1 CDSf 111511 - 111588 8.63 111511 - 111588 78 46 + 2 CDSl 111731 - 111946 -2.32 111731 - 111946 216 46 + PolA 111957 2.25 47 + 1 CDSf 112408 - 112414 -2.73 112408 - 112413 6 47 + 2 CDSl 113715 - 113806 8.34 113717 - 113806 90 47 + PolA 114065 0.75 48 + 1 CDSf 114212 - 114398 19.17 114212 - 114397 186 48 + 2 CDSi 114509 - 114642 16.35 114511 - 114642 132 48 + 3 CDSl 114795 - 115163 29.45 114795 - 115163 369 48 + PolA 115189 -3.15 49 + 1 CDSf 115707 - 115787 0.89 115707 - 115787 81 49 + 2 CDSi 115964 - 116013 -1.45 115964 - 116011 48 49 + 3 CDSl 116226 - 116460 21.96 116227 - 116460 234 49 + PolA 116689 2.25 50 - PolA 116696 -3.65 50 - 1 CDSo 116719 - 116931 13.24 116719 - 116931 213 51 + 1 CDSf 117212 - 117298 1.80 117212 - 117298 87 51 + 2 CDSi 117489 - 117672 24.38 117489 - 117671 183 51 + 3 CDSi 117800 - 118242 68.74 117802 - 118242 441 Predicted protein(s): >FGENESH: 1 2 exon (s) 6128 - 6327 43 aa, chain - MVDSRTTLGMTTNSCRLRYRNTTQISCVSSTTGLILVASRCCC >FGENESH: 2 1 exon (s) 7681 - 7836 51 aa, chain + MFAFAYFISNKTIKLNLHETRTVDPWDLCPMSQGLCLALFGIKCAALRPHL >FGENESH: 3 1 exon (s) 9674 - 9790 38 aa, chain + MVPEPTKVSIHTKNDTHGHGTQADQQLHKIIHNHNHNE >FGENESH: 4 1 exon (s) 11760 - 11966 68 aa, chain + MKGSMDRLPTRGLDPTKTWRIMEPFMGRGLPHDLWKVSWKKEEPPELRNNTMEPFTGCGI DDGAWEGL >FGENESH: 5 1 exon (s) 13521 - 13601 26 aa, chain + MIRCFRVKIIGKGSKFGHRIKGGKAK >FGENESH: 6 1 exon (s) 13630 - 13773 47 aa, chain + MKIAIARSTLTPRKHYPQAVKELPIIWEFSKWARRGGSSPMHKRNFP >FGENESH: 7 1 exon (s) 14331 - 14777 148 aa, chain - MKFSNAPVLAFLLDSQCNWLGLHLVFCLHSILSETPSFFSILAPFLPPYNYITHQLKREL LILRCKKWGFYELVFQFCESLHSLFIEYKFHPLLQKNAHSSSNLGKIFDKSPVEPRMTKK TPHPFYIIGRGKLFNNFPYSTIDFHPSL >FGENESH: 8 1 exon (s) 16621 - 16896 91 aa, chain - MGVGFFPISRVKPTFLINQFQKYTRSEMLRRHGQALQNSFLTLGKSFEVGDQVRDVLRSR IPMDTSSDKLISQKLVYEAELSRTFLGTFCP >FGENESH: 9 2 exon (s) 17250 - 17934 140 aa, chain + MSSYNFESCAFANEVAMLSSQRSGEGVTSRSRKRSRTGTKIPPTPSVLRGQTQWFGAKVL IPVGTKWYKSHTETKYFSDVVLEDENLERYFPDIKHCLLELHSSFKSLLSAMSALCENFM QTGRRMPVLTMLQLGAWKFL >FGENESH: 10 1 exon (s) 18382 - 18558 58 aa, chain + MHGTKCTRTECNRRDDVIITRMYDLEMLCHKNGGRASSEEQLDEFAAKFLRMNMGWLR >FGENESH: 11 1 exon (s) 18979 - 19137 52 aa, chain - MSLDVSTQSLTILQLLVYSTAIVSPQPKSKNPKDSIDETTLKTSSSIYHQEA >FGENESH: 12 3 exon (s) 19909 - 20657 178 aa, chain - MTLAMLLYRGFRCYAPTLRTPLLWRDPSLLGGNASTTWGCFLPVQYSAFWFSFFATSYSS FPPLIRCQNLAPFPMIFGLKHLIILTFYDSTSTPTSLSTLATTTDDNIALLGVPKVRPRK TSNLKNRVLFRADLCATTDPHMYQLPNFIKHVPSLQLNTHIHFIFIFYQKMGAGNNLR >FGENESH: 13 1 exon (s) 20664 - 20750 28 aa, chain + MRRIEQGSISVSQTWTRKSSYVPVLDYI >FGENESH: 14 2 exon (s) 22129 - 22655 61 aa, chain + MHLRRTNTRNQPMDTIDSLNEKVTHAVFKPTLRVLSHSRTSHVNQTDRRSVHNPSVICNN F >FGENESH: 15 1 exon (s) 36479 - 36586 35 aa, chain + MGLLKKQQWSCHPQKGKGYGYTPIMVSVRRLNLTQ >FGENESH: 16 1 exon (s) 37196 - 37396 66 aa, chain + MKRQRGYEITIKDVCVNFYGIYNSKNYFMSMSNQIHIHYEWIPFIYWVSQESQSPTLIFT NSLRVS >FGENESH: 17 1 exon (s) 51043 - 51294 83 aa, chain + MSIPPSQRARRVLINKDTVASREKASKLPTKGGKIIRKGNAHVVESLEASSNSEEVYETY LTSSDNEGESQDSIFDLEDVKFL >FGENESH: 18 1 exon (s) 51569 - 51715 48 aa, chain - MSGQTVWRFAEVLWQARTGSPKLPTNNFQKSQDNSVMIKDIRQIVDIN >FGENESH: 19 2 exon (s) 51922 - 52524 100 aa, chain + MGKAPMVESLEASSDSILRYGAPSNATNLRFLLKPRAPTFLIHKEFYLDYSEFVPQGNKK VDAFKPVYYVIVQGKKVKCDSEDINVVLGCTYNFMHDYRV >FGENESH: 20 2 exon (s) 52785 - 53156 34 aa, chain - MAWVIEGVEEYKPICTSRRQTLEKEEMSGTSYPS >FGENESH: 21 1 exon (s) 56382 - 56555 57 aa, chain + MSHRLSSYVSPKLSKILRKKVLFYGWHVHTEERPMTRTWDSSYMGEFLRSNTCSTLN >FGENESH: 22 1 exon (s) 73085 - 73225 46 aa, chain + MADIYGPEEYLQTVHGIRQRWKNFKVSLLGLWLTSTDHRNFYDSYV >FGENESH: 23 1 exon (s) 76312 - 76407 31 aa, chain + MGTVVITNHILMLTVNQGARVWLKVVLNYLI >FGENESH: 24 1 exon (s) 76834 - 76941 35 aa, chain + MVWDDVLTDEDKRWTMSDSESDSEVEKGDLLSLRW >FGENESH: 25 1 exon (s) 77218 - 77310 30 aa, chain + MDDDRLKGRFRHLGRKGWLLTKVNNCFELD >FGENESH: 26 1 exon (s) 78344 - 78439 31 aa, chain - MSKITTPHLKICSSSNPSTLSNNRQLYYTCL >FGENESH: 27 1 exon (s) 78541 - 78849 102 aa, chain - MKHVTNFWRPRPRLDLFLRLNLCTRGSTLRCVHDVQSTVKWTSFCSCKFQLHDVKLLPCT VLSILLAIFLYNIVFFFPTSVQVPYFGLFLFAFHPKTTNHLG >FGENESH: 28 1 exon (s) 80195 - 80308 37 aa, chain - MACKCGAWPAIPTKMQTNHANMRDNFSFLHECDEGVL >FGENESH: 29 2 exon (s) 85362 - 85595 41 aa, chain - MGELTELQFKKPFQELTLVNGNWPIQIPGAHPSLQTLRCSA >FGENESH: 30 2 exon (s) 85724 - 86238 112 aa, chain - MTNTIETNQSNSIFRITHFTRNHTYLRMCGCSTHVHQILYDIHLGSCDFKEAVLEVYQKG NTGQESTIIFLKFPIASKRLDKEVSRPFYMTLLDNFPHTTDVDQPRSNTTQS >FGENESH: 31 3 exon (s) 86549 - 86895 49 aa, chain + MHMEVASQVRIDSKPIARSDDGYWRGDIGHYVRDYYFARRTRTSVYGVP >FGENESH: 32 1 exon (s) 90097 - 90222 41 aa, chain + MKMKVKSIRTKIDQFFMKNIFTTDETGLFYRLQANHFLATK >FGENESH: 33 2 exon (s) 90352 - 90932 178 aa, chain + MNNLNCHYRVKQRASMTSVLFDEYVRWFDHKLYGGRVLLIVNNRLTDNTNIERLQNVELF FLPPNMTFKIQPYDVEIIRAFKIQSDPTKINIFNAINFSIPAWTANVWQETIANYFRHCK IRSENTILENLNELACENIIHDYELKIMINDLDYHNKMDAITCWIIRVKVLHVQRSIT >FGENESH: 34 3 exon (s) 92777 - 93765 108 aa, chain + MGMQFTAENLLDIYLVTRTYPIENKDKTVISDKRNSKYKANQRGCHVYLYIGSEKSNRSA LNNAAPVFRFTSTSSDLVLRVIYVAPRLASCTVTSPTKKRQLPKAVQM >FGENESH: 35 1 exon (s) 94094 - 94216 40 aa, chain - MEPQQKPRSRVLDLMQYALNNNLLSSGGSCVIPTQGLPQT >FGENESH: 36 2 exon (s) 94511 - 95969 191 aa, chain + MRSVRMDSIGPPTKRLVELNRHSIQDGQNGVRDGITGDGQGLSEEDESRINEDVEGGNET QRDLLQVQAVLQTQQQQPPGPLVRWERFLPLRSLKVLLVENDDSTRHVVSALLRNCSYED ETVQRSFLFFHFSTLSLVQLHASHGILAFWIFMIKWQGDVKCILNFWGSWERRPRRPFVI YNTFVALFYNF >FGENESH: 37 2 exon (s) 96280 - 96913 65 aa, chain + MGAGIPSKYLLFLSIQTPQKNPTRDHFLDVLDGFADSARIRAFNCFLYSQRFFFWMKRRL KRFFL >FGENESH: 38 2 exon (s) 97836 - 98475 30 aa, chain - MEVEVGYNGVFFVKSYHEKLLVFYFLRQKA >FGENESH: 39 1 exon (s) 99437 - 99580 47 aa, chain + MVENLQVSSSKLSRDKKTLGDYFYVLALVDRVNGYWLLVEVTCITWN >FGENESH: 40 1 exon (s) 100223 - 100414 63 aa, chain - MMPRGGASHFRNQRNTNLFLFLIAFQVVFQLFYYFNEVSCSVARTWVRVSNTSADLEVKS FVI >FGENESH: 41 1 exon (s) 100425 - 100583 52 aa, chain + MLTIVISCHLLKNLHSSVMMVDTKNLTLEELIGCCNDESPQIQRSQDVATPI >FGENESH: 42 1 exon (s) 101210 - 101317 35 aa, chain + MSGSNNSPRHTNYEGLQHSPSPRHTRDLKSRVWKI >FGENESH: 43 1 exon (s) 105079 - 105384 101 aa, chain + MYTWSQRSIMIDRAYENHLKPHLSFYTLVIYSRMPYFIDFTLLQFSKATRRSQHFINLPF QLRHTHVSLSFHVLNKMRRVETSTMHTSFSLKYHAKLELPQ >FGENESH: 44 1 exon (s) 106142 - 106417 91 aa, chain + MMSGTQHWTIFLSFPESARTASISPFHNVLVKLLTNQSVNVPSKSCTLFLIRSGVGNLCR CWRLRLTPPSQLVSCSFWIHVFLFHFFSNLL >FGENESH: 45 3 exon (s) 106644 - 108412 70 aa, chain - MLIKVITSSSMARGKAALHRLLALCKTIFKSIDEVEVFIQSLLCDKKIPQNYKLSRGSFE NSLSTSKRYW >FGENESH: 46 2 exon (s) 111511 - 111946 97 aa, chain + MGRWKVEIISKTKVIHIAVSKEFKMQCLVHYFPPHLVFGLKLYKKLLSNYTLELLGNWVK VDKYRTKLFLYGFLTSYKRNNFVIMFAIFSLELFDDK >FGENESH: 47 2 exon (s) 112408 - 113806 32 aa, chain + MEGFLSSVEANFYRGNYSTCPPTPASQRIWME >FGENESH: 48 3 exon (s) 114212 - 115163 229 aa, chain + MYYFGILAVIAVGYALEAWRILEDLTNHVDLVLTEVAMPFLSGVGLLSKIMNHKTLKNVP VIMMSANDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRKCHSKDIRTNRILSETH FALISHPFLSQAEVEVKVVYKLKSRRNLKVLKCRETTLIAMMKLRMEALIWTTGTEVTME VALRYSVFMAIVWHGFSISGLLCCSNFPECACTFPLYSHGGDTTVSSSF >FGENESH: 49 3 exon (s) 115707 - 116460 121 aa, chain + MSNLARQQSRLDSFRSTISGYLDLFTQEFMGSSYGNSLLQKCNGQKWWEVQNLRFGSGRE QRVRPEKMVGIWESCGGKLGNLGERPKSSYCNEIAWVVFSGSKSVLPNHYNHVLVKNYIH I >FGENESH: 50 1 exon (s) 116719 - 116931 70 aa, chain - MTLEIVLAFHGQVLNEERGWESKKIQSKNNGSAITQTRWEVTVRYPTGSHKQKGISEITN RLDLNYIVRL >FGENESH: 51 3 exon (s) 117212 - 118242 238 aa, chain + MTHCLDKKDTYLASSELPAWILNHSVTQHSSWSKRAIEVDSPQPMSPWNELADPPDSTCA QVIHSRPEALSATWVPANATRRCLNEKDELGNVRTVKDLNMGVANVPELEGLSGKVMDGL AASMKDKHLELDPKDNENMGRNLKLNKETREDDLKDKDVGYMGDITNTCTPQVESTANEV PNDPSKITNIKEIATYDSKDMPSLELSLKQLRDVGENGTGVQERNILRHSDLSAFSRH