FGENESH 2.4 Prediction of potential genes in Tomato genomic DNA
 Time    :   Tue Oct 16 16:40:09 2007
 Seq name: C04HBa0082D04.1 CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 
 Length of sequence: 153623 
 Number of predicted genes 6 in +chain 5 in -chain 1
 Number of predicted exons 15 in +chain 13 in -chain 2
 Positions of predicted genes and exons: Variant   1 from   1, Score:150.872119 
   G Str   Feature   Start        End    Score           ORF           Len

   1 +    1 CDSf     28911 -     29130   11.41     28911 -     29129    219
   1 +    2 CDSl     29187 -     29251   -3.92     29189 -     29251     63
   1 +      PolA     29505                1.61

   2 -      PolA     53952               -3.19
   2 -    1 CDSl     53983 -     54093    5.01     53983 -     54093    111
   2 -    2 CDSf     55502 -     55666   14.61     55502 -     55666    165

   3 +    1 CDSf     66711 -     66759    7.77     66711 -     66758     48
   3 +    2 CDSl     67326 -     67540   13.41     67328 -     67540    213
   3 +      PolA     67770               -0.59

   4 +    1 CDSf     83777 -     83865    3.32     83777 -     83863     87
   4 +    2 CDSl     83960 -     83999   -0.11     83961 -     83999     39
   4 +      PolA     84075                1.61

   5 +    1 CDSf    141670 -    141780   13.31    141670 -    141780    111
   5 +    2 CDSi    142350 -    142598   21.37    142350 -    142598    249
   5 +    3 CDSl    142648 -    142809    3.74    142648 -    142809    162
   5 +      PolA    143141                1.61

   6 +    1 CDSf    146872 -    147318   35.39    146872 -    147318    447
   6 +    2 CDSi    147415 -    147522    8.20    147415 -    147522    108
   6 +    3 CDSi    147862 -    147959   16.28    147862 -    147957     96
   6 +    4 CDSl    147991 -    148429   14.25    147992 -    148429    438
   6 +      PolA    149263                1.61

Predicted protein(s):
>FGENESH:   1   2 exon (s)  28911  -  29251    94 aa, chain +
MELTKNLGLKDLALTLLSKFRATSTDHFQIIDRAMVHEIFGQCLPSIDNLGLWLKDFPPW
LGTSPFALNQHLKAWDNITQQQTSLQTQYKDIKI
>FGENESH:   2   2 exon (s)  53983  -  55666    91 aa, chain -
MGMTIRWGLNRTMLPAPLLKEPQDRGTMNKNPPMMTLLAKRKYKHKEKRIFLMWLRQLAD
TCGHGKRPLSSHPSEVIAEDRARKKDPLQKE
>FGENESH:   3   2 exon (s)  66711  -  67540    87 aa, chain +
MECLKHHKFQIFTKAREVVSTSSTDIKKIEAEYLKDNADNTKREVIANGSIPVETPLYIS
SQGLSCTFISTGTSAYTPGSSAVALTL
>FGENESH:   4   2 exon (s)  83777  -  83999    42 aa, chain +
MGIWERGVLGLRGFGEDEKSKGNYVDLLWDRLCWVGSWVLGN
>FGENESH:   5   3 exon (s) 141670  - 142809   173 aa, chain +
MTVPKYNHTCMIQGHNKEQFYVGHPEIYPYKEKSDHECEEDKENCSEEGEIPKGPDLVDD
EDDRVRNKRDIEEDEDFDYNIQQISKVGYLSPRHTNSLKYGARKGRPDTITGQNKEQQGQ
SINTQKYFERLMDLTKRHQYTFIALIEPFQNPSDLEQYKRRLGFDKAGTNRSG
>FGENESH:   6   4 exon (s) 146872  - 148429   363 aa, chain +
MNPLPSMGQAFSLLIQEEKLREFKPVGRMSTYSVSLNVKVVDNKGNGGRFFKTNFQGNNY
ANGYGNHGDANNGSGGNHYPSNNSNRSVIVCDYCKRTGHIKDKCYKLHGYPQRSNNQNNR
LGNYNDCQSFRQQSSNYKGKRVVANVHGTIMSLLQHFQNENMGEDIGANNASSMAAGSMN
FAGTVAPLAKRPQVLGNCRDGLYFLCTKCLKTSDSQYILLSSSIKDETCNSFSANSCPPD
QYKVFVSNSVPLKCKPSSSNVNVLANHSYCSTVGDNVDLLWHNTLGHVPFVKMKSITDLP
VTFSPKQAFSCNICPMSRQQRLPFSHSTSQTKYIFELLHIDLWGPYHVSTYDNYKYFITL
VDD