FGENESH 2.4 Prediction of potential genes in Tomato genomic DNA Time : Tue Oct 16 16:34:48 2007 Seq name: C04HBa0128G23.1 CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 Length of sequence: 153634 Number of predicted genes 25 in +chain 10 in -chain 15 Number of predicted exons 55 in +chain 22 in -chain 33 Positions of predicted genes and exons: Variant 1 from 1, Score:481.701416 G Str Feature Start End Score ORF Len 1 - PolA 100 -4.49 1 - 1 CDSl 105 - 385 24.67 105 - 383 279 1 - 2 CDSf 1275 - 1734 22.26 1276 - 1734 459 2 - PolA 1786 1.61 2 - 1 CDSo 2426 - 3349 50.50 2426 - 3349 924 3 - PolA 3400 -0.59 3 - 1 CDSl 3415 - 3828 22.63 3415 - 3828 414 3 - 2 CDSf 3991 - 4107 5.60 3991 - 4107 117 4 - PolA 4524 1.61 4 - 1 CDSl 5151 - 5290 9.80 5151 - 5288 138 4 - 2 CDSf 5449 - 5683 1.10 5450 - 5683 234 5 - PolA 6008 1.61 5 - 1 CDSl 6226 - 6260 -2.89 6226 - 6258 33 5 - 2 CDSi 6370 - 6606 35.73 6371 - 6604 234 5 - 3 CDSi 6678 - 6970 28.72 6679 - 6969 291 5 - 4 CDSi 7250 - 7513 3.89 7252 - 7512 261 5 - 5 CDSi 7606 - 7673 11.51 7608 - 7673 66 5 - 6 CDSf 8187 - 8366 11.07 8187 - 8366 180 6 - PolA 13184 1.61 6 - 1 CDSl 13195 - 13239 2.30 13195 - 13239 45 6 - 2 CDSf 13502 - 13573 2.08 13502 - 13573 72 7 + 1 CDSf 17202 - 17238 6.55 17202 - 17237 36 7 + 2 CDSl 17845 - 18089 1.59 17847 - 18089 243 7 + PolA 18127 1.61 8 - PolA 27438 1.61 8 - 1 CDSl 27502 - 27687 11.42 27502 - 27687 186 8 - 2 CDSf 29267 - 29362 -0.84 29267 - 29362 96 9 + 1 CDSf 39976 - 40195 5.81 39976 - 40194 219 9 + 2 CDSl 41142 - 41338 4.78 41144 - 41338 195 9 + PolA 41531 -3.19 10 + 1 CDSf 41612 - 41841 6.19 41612 - 41839 228 10 + 2 CDSl 42560 - 43037 26.68 42561 - 43037 477 10 + PolA 43046 1.61 11 + 1 CDSo 52949 - 53113 0.89 52949 - 53113 165 11 + PolA 53370 1.61 12 + 1 CDSo 59677 - 59808 0.14 59677 - 59808 132 12 + PolA 59973 1.61 13 - PolA 81539 -0.59 13 - 1 CDSl 81780 - 82201 19.96 81780 - 82199 420 13 - 2 CDSf 82474 - 82555 11.08 82475 - 82555 81 14 - PolA 82580 -3.19 14 - 1 CDSl 83400 - 83844 12.37 83400 - 83843 444 14 - 2 CDSf 83992 - 84449 18.90 83994 - 84449 456 15 + 1 CDSf 85686 - 85828 12.99 85686 - 85826 141 15 + 2 CDSi 85917 - 86043 12.99 85918 - 86043 126 15 + 3 CDSl 86122 - 86313 10.52 86122 - 86313 192 15 + PolA 86603 1.61 16 - PolA 113184 -3.59 16 - 1 CDSo 113311 - 113598 7.96 113311 - 113598 288 17 - PolA 118681 1.61 17 - 1 CDSl 118787 - 118805 -5.41 118787 - 118804 18 17 - 2 CDSf 119174 - 119190 6.22 119176 - 119190 15 18 + 1 CDSf 121674 - 121771 5.30 121674 - 121769 96 18 + 2 CDSl 121979 - 122051 -1.23 121980 - 122051 72 18 + PolA 122077 1.61 19 + 1 CDSf 127884 - 128043 5.45 127884 - 128042 159 19 + 2 CDSl 128274 - 128602 6.20 128276 - 128602 327 19 + PolA 128863 -0.59 20 - PolA 142463 1.61 20 - 1 CDSl 142766 - 142886 0.55 142766 - 142885 120 20 - 2 CDSf 143015 - 143166 10.59 143017 - 143166 150 21 - PolA 144152 1.61 21 - 1 CDSl 144324 - 144462 12.43 144324 - 144461 138 21 - 2 CDSf 144556 - 144587 -3.58 144558 - 144587 30 22 + 1 CDSf 145101 - 145241 13.25 145101 - 145241 141 22 + 2 CDSl 145442 - 145588 -6.49 145442 - 145588 147 22 + PolA 145691 1.61 23 - PolA 145919 -5.69 23 - 1 CDSl 146007 - 146398 17.66 146007 - 146396 390 23 - 2 CDSf 146670 - 146751 5.68 146671 - 146751 81 24 - PolA 146776 -3.19 24 - 1 CDSl 147220 - 147241 -1.79 147220 - 147240 21 24 - 2 CDSi 147556 - 147644 11.69 147558 - 147644 87 24 - 3 CDSf 147729 - 147971 11.81 147729 - 147971 243 25 + 1 CDSf 148270 - 148317 -1.21 148270 - 148317 48 25 + 2 CDSi 149159 - 149219 13.52 149159 - 149218 60 25 + 3 CDSi 149791 - 149965 14.96 149793 - 149963 171 25 + 4 CDSi 150055 - 150181 10.89 150056 - 150181 126 25 + 5 CDSl 150262 - 150453 7.02 150262 - 150453 192 25 + PolA 150743 1.61 Predicted protein(s): >FGENESH: 1 2 exon (s) 105 - 1734 246 aa, chain - MSQKGYKMLDIESQTLFVSRDVIFYEQEFPFQSSYLGQADDPEIVFSYLNIGDCELTPCV ILRNEMNDTELPQHQNLISEASNNKSENEVTMFSGDTSQVTPSDVVNIRKSHRPTKAPIW HADYILTKNSKAGQCLYPIQDVVDYCSIAPSYKNKHDKLLKDPGVYQKLIGRLLYLTIKR SNIAFLVKLLSQFMHSPKTFHMDAAMRVVRSIKQSPGLGIFMTSAVDNQLRAYCDADWAS CPNNRK >FGENESH: 2 1 exon (s) 2426 - 3349 307 aa, chain - MYTSSDNQSTQFYNTQSQNSKKNYHTLYCDYCNMKKCDNCHATGHVKDNCYLMIGYPKNF KGKKKVNSVKIGGAQLQEALDHIGKSAMHSRLLDEMVHMDRIIKGQEEYCSDIPNQLGKL IHKATPTQLQQMLGILQGNKEFLDFQSCVNLVGNPNYCLKWIIDTGPSNHMINNHSYLHN KHTIRSTRQVQLPIIKSSTVSHIGNLQLNATEIISNVLCIPTFRFNLLSVKKLTKELNCC VSFFPTHCIFQDLSSWKVKGIGKVEEGLYVIQWNEKSQFSYNVCNKRRSWRSSILAQKIG TCFYEST >FGENESH: 3 2 exon (s) 3415 - 4107 176 aa, chain - MAIEDDSLGGSSTRTQGETTTGNLVMIDHNHPLYLSSSNDRCNAIVISWLTCNVSREFLS GILYSPSAHQVWLDLKERFGKINGLRLYQLHRDIYTLTQGVLSVSAYYTKLKNLWDEYDS ILPPPSCDCNKSKEYVEQLQYQLLLQFLMGLNDSYSSARGQILMMTIYPMLIKPML >FGENESH: 4 2 exon (s) 5151 - 5683 124 aa, chain - MFSTIKVHSPSSFSLASHRRRIKSSWTDYQSVIDDATGYKVHSISSSISYDKRLNFSCFK LLRVLDTISLRQLCYKPNELSHLKLNLIVLGDPPSEYKSPVFEHLHTLSELNPAGCTRST KRGY >FGENESH: 5 6 exon (s) 6226 - 8366 358 aa, chain - MQTAEKAIIFKCREGNYACKCQEGHCIFENSKKGVTSFHCQEGHYISEPPRGPLYSNIQK GYACWTGGNNGSALTGGVIANREGISWATKDVQQANYFGSLTQASTIRVGSFNGQEIYTS FKSILPMVTFICFEMTLSGVGCHFYILCFIFDLTRCLKKLKNERCDMKDAKLIHPDDVVF GEWDISNMNLADDMARANVFDVDLQKQLRPYMESMVPFPGIYDPDFIAVNHSLVSMTLIS LLQTKAHVLTLSSKEPRKIKLIKLLSILGYIREFKENNKVDKVVVLWTANTKRYSSVVVG FNDTMENLFASVDRNEAEISPSTLYAIAGILENVPFINGSPQNTFVPGLIDLAIKRNT >FGENESH: 6 2 exon (s) 13195 - 13573 38 aa, chain - MEDFRRTMSETSQASRIFSILHKQVYKITSRSSYSCVQ >FGENESH: 7 2 exon (s) 17202 - 18089 93 aa, chain + MDARSPSKRFTRELHVLPNYLAFMNVMFKHNLLGACFERNCSKTAILMHVNDTTLQFTIR YFAVIIGLEYSDNEKNFVFNTREPNGLFIIILN >FGENESH: 8 2 exon (s) 27502 - 29362 93 aa, chain - METSIRNDFLAEFETRKFSIGDFVDPVCVLGSVVLSTEYTYNLMNDGKSFVVSLSCGRFQ YEEIPCEHDWAVLKHKNLVADGNCSDLYKPKTV >FGENESH: 9 2 exon (s) 39976 - 41338 138 aa, chain + MKYKINQYLSNLKKSHKKWFEPLILISRTERSMNRDPDAYRYKWSNGSKGFQEHLEQSVS KKKSRFQVLFDRLHMNLSDSEGKNLHLYLNFNSNIGLIHTLCSEKDLSSEKRNKWSLCLK KCVEKGQTYRTFQRDSAF >FGENESH: 10 2 exon (s) 41612 - 43037 235 aa, chain + MIHRNNESPLISTHLRSPNAREFLYSILFLLLVARYLVRTRLLFVSRASSELQTEFERVK CLMTPSSMIELRKLLDRFYRNWTIIFGQIPSDKLLCSFHYGISNKFLDNKSKGFLLDEID IDDSDDIDDSDDFDRDDFDRDLDMELELLTRMNGLTVDMMPEIDRFYITLQFELAKAMSA CIIWIPHIHDPDVNELNDLSLGLLVTISLGIVKDVLLEIFLLLLRYIFPKKWILL >FGENESH: 11 1 exon (s) 52949 - 53113 54 aa, chain + MHSMEVFLDRGIDICKDSLFVLDQVDWTNGHLIICTTSSYATIGLSKTFRYSRL >FGENESH: 12 1 exon (s) 59677 - 59808 43 aa, chain + MTNKISDNLSLIGCSVTSNVGVISKFENLKIIVLGYRILLAEQ >FGENESH: 13 2 exon (s) 81780 - 82555 167 aa, chain - MVLHREVARAIKFQGHIPLRFWGNCNLEFDEVSEKGNIDSLPKDPSVYKRLIGKFLHRIV TRPDISFAIQTLSLFLQKPKQSHLNVALRVVKYITGQAWLGILLPSTDNKLLQVYCDSDS AACPHTRRSITGFLFKLGYSSSHGIPRCMELYQEAQLKLSIGAWLIQ >FGENESH: 14 2 exon (s) 83400 - 84449 300 aa, chain - MNSLKNLATIICISWIMNYVSKELLGGIVYSTNAIVMWKDLKERYDKVDGSRIFQLHNEI ASASQGTSSISVYFSCLRYLEVELDSITHVHGCECAKSRDFVLFMDNQKLLQYLMGLNEW YKQERGQILMMIPFPSLNKAYSILIERESQRSMGSRTQYVFDWLGILQILRGEVRISLIN NQIRGTISMREVVVTITLKEVVIFIIVIRVLITSQAPVLSGYIDYKKGMEVIMNSISKFY ICLGNQTCREAQVRVLVPRVQVQAVLTLFRVPHPTNTAGNISNYTIGRHTWKLDSGATNL >FGENESH: 15 3 exon (s) 85686 - 86313 153 aa, chain + MTTLDNTITQSYTSINLQHNPASQGQDPAFSKQVHDHQRLIIEPDGCGFNPRKKTADILT SSIEKFFNDAYLTWSEIPQAVRQQIFNEFKEKCVWLPVHDKQIAFNFEKRVRHKISDNIH YSRKNGTVPKWCKPNIWEDICEKLRKRSEQRSS >FGENESH: 16 1 exon (s) 113311 - 113598 95 aa, chain - MRLTVNLMQVNDKVLHHTFQSMSNCQFLLKLNSLQSHIYLQTPHYLLIFLPLQELVFPLI NLPRNYNLHLKYSHTSCPLKYSHIPETLTQLHSPI >FGENESH: 17 2 exon (s) 118787 - 119190 11 aa, chain - MTELARIRKNF >FGENESH: 18 2 exon (s) 121674 - 122051 56 aa, chain + MLSARNDEKECWNIHPELHNRHEQEGTMENNNKRRDIKERGKQKGMGESEVRRNQL >FGENESH: 19 2 exon (s) 127884 - 128602 162 aa, chain + MQISKNSKEKHHFTQHEVNRIKGVLPFRGHRFWGTEQAGTSKDSKRFRCTEKRKGINREF WVGFWGKRREFGSKPIPKIQIFQNISLKWVNNLFIGLRNHSKRGKGNKLLGLVPNVLVQR VLILRSQGRFRAPLQLRTKRDNRKKTNRESVLSVRVDAVVLP >FGENESH: 20 2 exon (s) 142766 - 143166 90 aa, chain - MAYPCQIFHEIIFKGSNFPIAFAIREPLKVDMVTKNQARQSYYELKVEVDWHYEKGCWNI HPEIHNRDEQEGTTMNNSKQEEKDGIKREY >FGENESH: 21 2 exon (s) 144324 - 144587 56 aa, chain - MSIRGYQGVDKRSMLYFHYPKSDYDEAYHKPGWPVKTQTTCDKPMLQYNYVEEKQM >FGENESH: 22 2 exon (s) 145101 - 145588 95 aa, chain + MSSNAKSFTKESNTNNTNAIMQDVPPMQQQYPMLFGVLLIPNNQIAMMLLATNSKGRNKE DYDNFPKYYSTQYPSNASQRQLICSTPNNFLTNFS >FGENESH: 23 2 exon (s) 146007 - 146751 157 aa, chain - MMLQREVARAKNFQGHIPLRFWGNCNLEFDEVSEKGNTDSLPKDPSVYKRLKGKLLYRIV TRPDISFAIKTLSLFLQKPKQSHLNVAFRVVKYINGKEWVGILFSSTNYKLLQVYCDSDS ATCPHSRRSITGFLFKLRDSSSHGIPRSMELYQEAQL >FGENESH: 24 3 exon (s) 147220 - 147971 117 aa, chain - MILMDVCDHCKRKGFTKAICFQLVGYPPNFERRSENLTNQQSDKGNYQRERGGSNYHIER SSNFHNSHQSAHHISSTRPLKGGSDMGTSSQDLSTRSANSIQGPSSNKHYRTFTIGR >FGENESH: 25 5 exon (s) 148270 - 150453 200 aa, chain + MGDTIKFYPEISQTTKEEIAEEERNQDSHQILNPLAGHIDVPSPASFMTTSDNTIIQSYT SINQQHNPASQGQDPAFPKQVHDHQRLIIEPDGCGFNPRKKTVDILTSSIEFFFNDAYLT WSEIPQAVRQQIFNEFKEKCVWLPVHDKQIVFNFEKRVRHKISDNIHYGRKNGTIPKWCK PNIWEDICEKWRKRSEQRSS