FGENESH 2.4 Prediction of potential genes in Tomato genomic DNA
 Time    :   Thu May 24 23:51:48 2007
 Seq name: C04HBa0134D05.1 CU302230.4 submitted_to_sgn_as:C04HBa0134D05 
 Length of sequence: 76058 
 Number of predicted genes 10 in +chain 4 in -chain 6
 Number of predicted exons 29 in +chain 10 in -chain 19
 Positions of predicted genes and exons: Variant   1 from   1, Score:205.284595 
   G Str   Feature   Start        End    Score           ORF           Len

   1 -      PolA      2126               -5.39
   1 -    1 CDSo      2138 -      2422    9.91      2138 -      2422    285

   2 -      PolA      2832               -5.09
   2 -    1 CDSl      2952 -      3292   32.32      2952 -      3290    339
   2 -    2 CDSi      3823 -      3877    4.13      3824 -      3877     54
   2 -    3 CDSi      4167 -      4190    3.09      4167 -      4190     24
   2 -    4 CDSi      4225 -      4359    0.04      4225 -      4359    135
   2 -    5 CDSf      4503 -      4706   19.46      4503 -      4706    204

   3 -      PolA      4813                1.61
   3 -    1 CDSl      4925 -      5073    4.57      4925 -      5071    147
   3 -    2 CDSi      5316 -      5529   14.27      5317 -      5529    213
   3 -    3 CDSf      5773 -      5790   -4.24      5773 -      5790     18

   4 +    1 CDSf      6076 -      6142    3.47      6076 -      6141     66
   4 +    2 CDSi      6856 -      7030   21.36      6858 -      7028    171
   4 +    3 CDSi      7120 -      7246   14.11      7121 -      7246    126
   4 +    4 CDSl      7327 -      7518    9.44      7327 -      7518    192
   4 +      PolA      7809                1.61

   5 -      PolA     20697               -3.59
   5 -    1 CDSo     20722 -     20856    4.04     20722 -     20856    135

   6 -      PolA     28328                1.61
   6 -    1 CDSl     28587 -     28829    2.73     28587 -     28829    243
   6 -    2 CDSi     29107 -     29225   12.07     29107 -     29223    117
   6 -    3 CDSi     29947 -     30007    6.61     29948 -     30007     60
   6 -    4 CDSi     30771 -     30775   -3.41     30771 -     30773      3
   6 -    5 CDSf     31113 -     31128   -1.02     31114 -     31128     15

   7 +    1 CDSf     36004 -     36009   -2.82     36004 -     36009      6
   7 +    2 CDSl     37426 -     37521    9.13     37426 -     37521     96
   7 +      PolA     37538                1.61

   8 +    1 CDSf     38649 -     38812    3.27     38649 -     38810    162
   8 +    2 CDSl     39403 -     39550   11.13     39404 -     39550    147
   8 +      PolA     39807                1.61

   9 +    1 CDSf     54041 -     54123    1.64     54041 -     54121     81
   9 +    2 CDSl     54902 -     55097    7.61     54903 -     55097    195
   9 +      PolA     56008                1.61

  10 -      PolA     72861                1.61
  10 -    1 CDSl     73456 -     73596    4.44     73456 -     73596    141
  10 -    2 CDSi     74032 -     74134   11.38     74032 -     74133    102
  10 -    3 CDSi     74167 -     74443   21.26     74169 -     74441    273
  10 -    4 CDSf     75333 -     75792   22.26     75334 -     75792    459

Predicted protein(s):
>FGENESH:   1   1 exon (s)   2138  -   2422    94 aa, chain -
MIKVLVRSGFVQSYLDYSLLTKNIGNALVIILVYVDDMMITCNDINLGDLRYFLGIEFSR
SKNGIVIPQRNYTLEIISKVGAAKPATTPLDPYV
>FGENESH:   2   5 exon (s)   2952  -   4706   252 aa, chain -
MYQDQAPNLSGFIDNKKGMDVIMNNIIRFYICFGNQTCRKAQIWVLVPRVQVQAVLTLFR
VPRLQTLQAKPLLLPTQGPVTSQNDNVNDVLVKPAFKNNLLLVSKLTRDLHCSDLYNRQM
KLLHIDVWVYSNFLHMMGTGEKQFFISRDIIFNESLFPFSVPPSTTWKLFPTTLAPPDYE
TDHMADVISSPTPPVITSPTSVQYGNRRSQRTSNAPIWMKDYAVVVQNIPSTSKPLYFTD
QYLGYDRLTPPY
>FGENESH:   3   3 exon (s)   4925  -   5790   126 aa, chain -
MENSNMEAYSPNLTALWYRCNVIVLSCIMNYVSKELLGGIVYSTNAIVMWWDLKDIYDKV
DGSRIFQLINEIASSSQEKVKDQCQSHKSGCQTEITALVSIRARSNPENRLKKPFSPYGY
DPNVCV
>FGENESH:   4   4 exon (s)   6076  -   7518   186 aa, chain +
MQEEVAEGERNQDSHQILNPLAGHINVPSPASFMTSSDNTITQSYTSINLQHNPASQGQD
PALPRQVDDHQRLIIEPEGSGFSPRKKTADILTSSIEKFFNDAYLTWSEIPQAVRQQIFN
EFKEKCVWLPVHDKQIAINFEKRVRHKISDNIYYGRKNGTIPKWCKPNIWEDMCEKWRKR
SEKRSS
>FGENESH:   5   1 exon (s)  20722  -  20856    44 aa, chain -
MADGTVKIFKKRLVPKDSNEIEGVDFEETFSPVVNTTTIYMVLS
>FGENESH:   6   5 exon (s)  28587  -  31128   147 aa, chain -
MTGLIDPKEIAEGDRNQDSHQILNPLVGNIDVPSPVSFMYTLDNSYISMNLQHKPTAQDQ
DPSLPKQENSVLLSIHDKKIEINFERQVRHRILDSYNGRKNDTISKWCKPIIWEDLCKMW
RKRSDRYLVNLYAYSSPSPILVPYCLV
>FGENESH:   7   2 exon (s)  36004  -  37521    33 aa, chain +
MEAYSSIVCIENGGRLNRKSIPINGNGVQIGLE
>FGENESH:   8   2 exon (s)  38649  -  39550   103 aa, chain +
MQISKNSKEKHHFIQHEDKRFKGVLPFRGQQFWGTGRARTSKDSKRFRCTEKRSRRHLEL
DAVNFERELFEEFLLLIGRLNRVKVKEWVGLRKGLGILELARD
>FGENESH:   9   2 exon (s)  54041  -  55097    92 aa, chain +
MEDTNGIILPFKFQQSGIKLRLILEKSGSPKGEIVLNARQEFTGMDEIGTSTCQTFNKPS
TIMRISKNSEDRLHFTQLEDKRIKGVLPFWGQ
>FGENESH:  10   4 exon (s)  73456  -  75792   326 aa, chain -
MSQKGYKMLDIESQTLFVSRDVIFYEQEFPFQSSYLGQADDPEIVFSYLNIGDCELTPCV
ILRNEMNDTELPQHQNLISEASNNKSENEVTMFSGDTSQVTPSDVVNIRKSHRPTKAPIW
HADYILTKNSKAGQCLYPIQDVVDYCSIAPSYKNKHDKLLKDPGVYQKLIGRLLYLTIKR
SNIAFLVKLLSQFMHSPKTFHMDAAMRVVRSIKQSPGLGIFMTSAVDNQLRAYCDADWAS
CPNNRKFTNILVVQETKYHFKKFSRGRIQKLGFISRRNCMEESLQLVSFQFYNVYGVNLL
EEINSVLSLLLFTVTSIDLLHRFSIR