FGENESH 2.4 Prediction of potential genes in Tomato genomic DNA Time : Tue Oct 16 16:50:25 2007 Seq name: C04SLm0125H12.1 CU222540.11 htgs_phase:3 submitted_to_sgn_as:C04SLm0125H12 Length of sequence: 159400 Number of predicted genes 26 in +chain 17 in -chain 9 Number of predicted exons 47 in +chain 29 in -chain 18 Positions of predicted genes and exons: Variant 1 from 1, Score:216.990625 G Str Feature Start End Score ORF Len 1 - PolA 6649 -4.29 1 - 1 CDSl 6656 - 6782 5.08 6656 - 6781 126 1 - 2 CDSf 7269 - 7297 1.87 7271 - 7297 27 2 + 1 CDSo 10718 - 10939 5.75 10718 - 10939 222 2 + PolA 11596 1.61 3 - PolA 14288 1.61 3 - 1 CDSl 14450 - 14522 -2.65 14450 - 14521 72 3 - 2 CDSf 14576 - 14697 7.61 14578 - 14697 120 4 + 1 CDSo 14782 - 14940 5.34 14782 - 14940 159 4 + PolA 15039 -4.29 5 - PolA 17923 1.61 5 - 1 CDSl 17951 - 18034 8.50 17951 - 18034 84 5 - 2 CDSf 18161 - 18208 -2.05 18161 - 18208 48 6 + 1 CDSf 36625 - 36660 3.05 36625 - 36660 36 6 + 2 CDSl 37019 - 37144 0.73 37019 - 37144 126 6 + PolA 37270 1.61 7 + 1 CDSf 37516 - 37597 4.52 37516 - 37596 81 7 + 2 CDSl 37653 - 37864 18.51 37655 - 37864 210 7 + PolA 38495 1.61 8 + 1 CDSo 39133 - 39288 8.84 39133 - 39288 156 8 + PolA 39325 -0.59 9 + 1 CDSo 39451 - 39639 5.64 39451 - 39639 189 9 + PolA 40375 1.61 10 + 1 CDSf 41756 - 41858 1.65 41756 - 41857 102 10 + 2 CDSl 42045 - 42172 8.02 42047 - 42172 126 10 + PolA 42287 1.61 11 - PolA 42385 -4.29 11 - 1 CDSl 42443 - 42572 1.08 42443 - 42571 129 11 - 2 CDSf 42789 - 42955 6.86 42791 - 42955 165 12 + 1 CDSf 67692 - 67726 -4.68 67692 - 67724 33 12 + 2 CDSl 68041 - 68338 15.45 68042 - 68338 297 12 + PolA 68433 1.61 13 + 1 CDSo 68463 - 68501 1.17 68463 - 68501 39 13 + PolA 68582 1.61 14 - PolA 73641 1.61 14 - 1 CDSo 75198 - 75344 9.24 75198 - 75344 147 15 - PolA 94232 1.61 15 - 1 CDSl 94244 - 94471 17.55 94244 - 94471 228 15 - 2 CDSi 94719 - 94843 -1.90 94719 - 94841 123 15 - 3 CDSf 95389 - 95416 5.41 95390 - 95416 27 16 + 1 CDSo 100854 - 100994 5.59 100854 - 100994 141 16 + PolA 102174 1.61 17 + 1 CDSf 120267 - 120302 3.89 120267 - 120302 36 17 + 2 CDSl 120695 - 120850 1.49 120695 - 120850 156 17 + PolA 120893 -0.59 18 + 1 CDSo 120926 - 121207 13.66 120926 - 121207 282 18 + PolA 121256 1.61 19 + 1 CDSo 121405 - 121593 24.94 121405 - 121593 189 19 + PolA 121716 1.61 20 + 1 CDSf 121986 - 122072 1.45 121986 - 122072 87 20 + 2 CDSi 122180 - 122183 -1.79 122180 - 122182 3 20 + 3 CDSl 122951 - 123159 7.06 122953 - 123159 207 20 + PolA 123986 1.61 21 + 1 CDSf 124655 - 124711 3.96 124655 - 124711 57 21 + 2 CDSl 125308 - 125457 1.41 125308 - 125457 150 21 + PolA 125464 1.61 22 - PolA 133608 1.61 22 - 1 CDSl 133640 - 133822 -1.28 133640 - 133822 183 22 - 2 CDSf 135298 - 135567 26.28 135298 - 135567 270 23 - PolA 135933 1.61 23 - 1 CDSl 136364 - 136483 0.36 136364 - 136483 120 23 - 2 CDSi 136814 - 136986 6.49 136814 - 136984 171 23 - 3 CDSf 137056 - 137215 9.30 137057 - 137215 159 24 + 1 CDSf 153549 - 153613 -9.94 153549 - 153611 63 24 + 2 CDSi 153675 - 153846 19.82 153676 - 153846 171 24 + 3 CDSi 154149 - 154172 2.65 154149 - 154172 24 24 + 4 CDSl 154452 - 154508 2.42 154452 - 154508 57 24 + PolA 154589 -0.59 25 + 1 CDSf 157925 - 157989 -8.99 157925 - 157987 63 25 + 2 CDSl 158049 - 158193 8.88 158050 - 158193 144 25 + PolA 158320 1.61 26 - PolA 158620 -0.59 26 - 1 CDSo 158773 - 158907 1.94 158773 - 158907 135 Predicted protein(s): >FGENESH: 1 2 exon (s) 6656 - 7297 51 aa, chain - MTVSTGTHCMHFRLKFKYQGDNLATGESYQATKQIRKIIQEVDNIKGLEQT >FGENESH: 2 1 exon (s) 10718 - 10939 73 aa, chain + MNAMKDFRSTPDIVWFHYEDSCRHPHLEFVEGFKVPKCGAFNRVGNPLTYLRVYYDQIIG FGKDEAFLKRLFS >FGENESH: 3 2 exon (s) 14450 - 14697 64 aa, chain - MSLLEGLTLPRLISTRILNLLKMSMIIKRLLLNVIVDASTCSCRKFEGGVFARILNSSFS SEKH >FGENESH: 4 1 exon (s) 14782 - 14940 52 aa, chain + MDQLHPINGSSIEHHHHINGASSILPMDHQWKIIILSMEHHKYATNGASLPY >FGENESH: 5 2 exon (s) 17951 - 18208 43 aa, chain - MKKSQSLKYIVWDHQKAVNGDQKEIQRAGVSTLNERLRGDMDE >FGENESH: 6 2 exon (s) 36625 - 37144 53 aa, chain + MAASASSQPPSENNCSSPIRMLKWDPVFTPEEDTTTTISWIFFHRFHEIIFGK >FGENESH: 7 2 exon (s) 37516 - 37864 97 aa, chain + MNSPIEKKVLYSKDTKMGRRQTEMVGEDKQEKRKEEEKVDLNFVDTNIGTPGVKMSGNKD KRSKFKNGTMDNEQVEGYIHARNKNIAKPDDIVDSSQ >FGENESH: 8 1 exon (s) 39133 - 39288 51 aa, chain + MEDVIKVKEIQWKVQPHARNKAKLSNVEAEFKKYLQVVEDFCSLNARIKWF >FGENESH: 9 1 exon (s) 39451 - 39639 62 aa, chain + MFEMDYVKNYQIPKSISYDKNEATSRLLDQDDVNKVVFEFNGSIPCGPDVFTGHFFKCCW RS >FGENESH: 10 2 exon (s) 41756 - 42172 76 aa, chain + MVDTLQRYPLNLRDLLVRWKMPIQGCFTCNTDGANLLIKDIIVMNWKIPWEYPKQREDMH EMVAQIIAVCSIFSER >FGENESH: 11 2 exon (s) 42443 - 42955 98 aa, chain - MSPFVGFTEMLFQLPFSLLPSSFLIPPPCRHENVLLHGINILHQAFVTCYSHKLSRLSRI REKDFSSIRFLAECFKNIRFGPFTISFSYLYIPFCLLT >FGENESH: 12 2 exon (s) 67692 - 68338 110 aa, chain + MIVSQNDNLCVRNNEGYLVYAEIQKIGEVSAESAEIRAVKQGPDACVQKGCLALTIETDS LITKEILDWIWEVSWIVSIYVRNIKFSMNNRDVEVVHTFKEGNKLVVLLN >FGENESH: 13 1 exon (s) 68463 - 68501 12 aa, chain + MENRGFTTDAQI >FGENESH: 14 1 exon (s) 75198 - 75344 48 aa, chain - MVSLTVLGLVSDAISCMVALNTHVGEFQVKTTDIQTDRDIFNSLWSYP >FGENESH: 15 3 exon (s) 94244 - 95416 126 aa, chain - MVADSRAIKRPLMQLRQIIDSCWKADCYSNLKPLTKAVQAFIIWFICKRRNIIGEVSANE AEIRAVKEVSNYSVQKGYLPLTIETDSLITKKILDGVFEVPWIVSKNVSNIKFSMHTGNV EVVHTF >FGENESH: 16 1 exon (s) 100854 - 100994 46 aa, chain + MKMSLKREKSLIQMIKNYLKEEQKCWATFITDVTLPVLRQKIMKKQ >FGENESH: 17 2 exon (s) 120267 - 120850 63 aa, chain + MAASASSQPPSQDPVFTSEEDTTTTIGWISFPSLPPNHFGEEVVFSLALEVGKTTTGRLV NKK >FGENESH: 18 1 exon (s) 120926 - 121207 93 aa, chain + MEEWIKIKYNHVPKYCQTWMIQGHNEEQCYVVNPDYIKKKRRRQVERMKNDRTEKNRIAR RTIAEHSTKVGNVQQSNREEGFVEQRYKKLGGN >FGENESH: 19 1 exon (s) 121405 - 121593 62 aa, chain + MDNEPVEGYNDAGKKNIATPSDIVDSSQGRKRGGDMTERRNDEVLSTKYNNEENNYGSKV LY >FGENESH: 20 3 exon (s) 121986 - 123159 99 aa, chain + MEPFQNLFELEDYKRKLGFRHAGVNYSGKPWKRKKLHIGQIATDQEIMLQTDEQIGQLFV VFFEEQFHVKIKETDNAVIDKIQKRILDNENEAMSRLLD >FGENESH: 21 2 exon (s) 124655 - 125457 68 aa, chain + MQGALYFTEGELGQDEELKVCVLLMPIGNTSTNKDQIPMDLKNVKTLVRNCGYTSEIFVQ HTLSTCEV >FGENESH: 22 2 exon (s) 133640 - 135567 150 aa, chain - MAVGNAEQRERVTRLEVLIGGTNDGEDLVDLVTPIQRVKEELTFTKEFLNEKALLLEAES ASKHETTQQKIEFARMGKEDQRGEVLLLRRAMTVQYLQIVLESKNIKGKCIKETIISEQE HMPRTCGSYLFVTPSVLIRCIPCMHSEFKF >FGENESH: 23 3 exon (s) 136364 - 137215 150 aa, chain - MTVTTQLVLLTSNKNTRVMGKIKMGKTKLQKKKKNMGKLDKESPLFQRRRESLAELEKGK SNDAKMSKVNSLALVEDEDDGQDMILVRSRNRFRSMISPTRTSSFNRWRKFQENKKWHEL VKSKQCPSKAAAGCRWCGDMEHVRMDTIRL >FGENESH: 24 4 exon (s) 153549 - 154508 105 aa, chain + MCSFKLLQGGDLKNTFFGVSQMNNEGDLVYAEPQKIGEVSAIAAEIRSVKQGLDDCIQKG CLALTIETYSLITKDILDWVYDRNNYKLDPRYNVHSSSRRSALGC >FGENESH: 25 2 exon (s) 157925 - 158193 69 aa, chain + MCSFKLLQGGDLQNTFFGVSQMINEGDLVYAKVKKIGEVSAIASEIRAVEQGLDDCVQKG CLTLTIETD >FGENESH: 26 1 exon (s) 158773 - 158907 44 aa, chain - MDPVSECNHLYVKRLSLAPLFSTLELFFNLMSEHFGFDQAVNGC