FGENESH 2.4 Prediction of potential genes in Nicotiana_dicot genomic DNA Time : Thu May 24 22:13:20 2007 Seq name: C04HBa0198L24.1 CT476825.1 submitted_to_sgn_as:C04HBa0198L24 Length of sequence: 160432 Number of predicted genes 43 in +chain 16 in -chain 27 Number of predicted exons 81 in +chain 25 in -chain 56 Positions of predicted genes and exons: Variant 1 from 1, Score:799.524902 G Str Feature Start End Score ORF Len 1 + 1 CDSo 344 - 427 -0.14 344 - 427 84 1 + PolA 471 2.25 2 + 1 CDSo 929 - 1066 1.96 929 - 1066 138 2 + PolA 1163 -0.75 3 - PolA 6020 0.75 3 - 1 CDSo 6118 - 6231 4.02 6118 - 6231 114 4 - PolA 6399 0.75 4 - 1 CDSl 6606 - 6661 1.45 6606 - 6659 54 4 - 2 CDSf 7651 - 7819 10.58 7652 - 7819 168 5 - PolA 8222 2.25 5 - 1 CDSo 8472 - 8627 4.81 8472 - 8627 156 6 + 1 CDSo 8673 - 8789 3.86 8673 - 8789 117 6 + PolA 9173 2.25 7 + 1 CDSo 9543 - 9833 5.42 9543 - 9833 291 7 + PolA 10230 -0.55 8 - PolA 10678 2.25 8 - 1 CDSl 10737 - 10824 12.87 10737 - 10823 87 8 - 2 CDSf 11113 - 11225 0.17 11115 - 11225 111 9 - PolA 16959 -0.55 9 - 1 CDSo 16988 - 17098 5.00 16988 - 17098 111 10 - PolA 19759 -0.55 10 - 1 CDSo 19879 - 20175 19.29 19879 - 20175 297 11 - PolA 24505 2.25 11 - 1 CDSl 24655 - 24662 5.67 24655 - 24660 6 11 - 2 CDSf 24816 - 24915 3.35 24817 - 24915 99 12 - PolA 24957 2.25 12 - 1 CDSl 25107 - 25355 9.84 25107 - 25355 249 12 - 2 CDSi 25610 - 25700 6.46 25610 - 25699 90 12 - 3 CDSf 26167 - 26273 7.16 26169 - 26273 105 13 + 1 CDSf 26316 - 26434 -2.95 26316 - 26432 117 13 + 2 CDSl 26592 - 26721 7.45 26593 - 26721 129 13 + PolA 26830 2.25 14 + 1 CDSf 28804 - 28944 6.00 28804 - 28944 141 14 + 2 CDSl 29292 - 29471 5.65 29292 - 29471 180 14 + PolA 29479 0.75 15 - PolA 30915 2.25 15 - 1 CDSo 30985 - 31110 -1.41 30985 - 31110 126 16 + 1 CDSo 34767 - 35336 35.25 34767 - 35336 570 16 + PolA 36049 -7.75 17 + 1 CDSo 37736 - 37894 4.76 37736 - 37894 159 17 + PolA 38067 2.25 18 - PolA 42615 0.75 18 - 1 CDSo 42793 - 42960 16.00 42793 - 42960 168 19 + 1 CDSf 46522 - 46627 4.13 46522 - 46626 105 19 + 2 CDSi 46920 - 47002 8.08 46922 - 47002 81 19 + 3 CDSl 47115 - 47162 -3.54 47115 - 47162 48 19 + PolA 47342 2.25 20 - PolA 47895 -2.55 20 - 1 CDSl 47927 - 47992 1.55 47927 - 47992 66 20 - 2 CDSf 48535 - 48645 9.63 48535 - 48645 111 21 + 1 CDSf 55329 - 55577 16.55 55329 - 55577 249 21 + 2 CDSl 56037 - 56084 -2.64 56037 - 56084 48 21 + PolA 56102 2.25 22 + 1 CDSf 56654 - 56709 4.86 56654 - 56707 54 22 + 2 CDSl 57406 - 57505 6.67 57407 - 57505 99 22 + PolA 58111 2.25 23 - PolA 58899 0.75 23 - 1 CDSl 58915 - 59211 13.80 58915 - 59211 297 23 - 2 CDSf 59471 - 59509 -5.84 59471 - 59509 39 24 - PolA 65792 2.25 24 - 1 CDSo 65853 - 66008 -1.48 65853 - 66008 156 25 - PolA 66781 2.25 25 - 1 CDSl 66789 - 67897 133.23 66789 - 67895 1107 25 - 2 CDSf 69005 - 69440 65.29 69006 - 69440 435 26 - PolA 75441 -2.05 26 - 1 CDSl 75635 - 75811 15.10 75635 - 75811 177 26 - 2 CDSi 75933 - 76361 54.17 75933 - 76361 429 26 - 3 CDSf 76440 - 76496 6.88 76440 - 76496 57 27 - PolA 77791 -0.55 27 - 1 CDSo 77933 - 78226 6.37 77933 - 78226 294 28 - PolA 78282 -4.25 28 - 1 CDSl 78310 - 78784 41.37 78310 - 78783 474 28 - 2 CDSf 79124 - 79191 10.14 79126 - 79191 66 29 - PolA 82819 -2.55 29 - 1 CDSl 82970 - 83155 21.37 82970 - 83155 186 29 - 2 CDSi 83230 - 83273 4.18 83230 - 83271 42 29 - 3 CDSf 97398 - 97554 18.92 97399 - 97554 156 30 - PolA 99758 0.75 30 - 1 CDSl 99818 - 99858 3.17 99818 - 99856 39 30 - 2 CDSf 100391 - 100496 9.26 100392 - 100496 105 31 - PolA 100509 2.25 31 - 1 CDSl 100617 - 100745 9.52 100617 - 100745 129 31 - 2 CDSf 100818 - 100865 -7.77 100818 - 100865 48 32 + 1 CDSf 105995 - 106108 11.33 105995 - 106108 114 32 + 2 CDSl 107088 - 107162 -0.73 107088 - 107162 75 32 + PolA 107212 2.25 33 - PolA 110559 -0.55 33 - 1 CDSl 110644 - 110798 8.54 110644 - 110796 153 33 - 2 CDSf 111155 - 111248 -2.38 111156 - 111248 93 34 - PolA 111531 -2.05 34 - 1 CDSl 111686 - 111796 7.11 111686 - 111796 111 34 - 2 CDSi 111872 - 111962 14.59 111872 - 111961 90 34 - 3 CDSi 112046 - 112142 9.70 112048 - 112140 93 34 - 4 CDSf 112181 - 112277 4.44 112182 - 112277 96 35 + 1 CDSf 115459 - 115719 2.57 115459 - 115719 261 35 + 2 CDSl 115994 - 116161 12.58 115994 - 116161 168 35 + PolA 116204 -3.15 36 + 1 CDSo 116283 - 116537 17.20 116283 - 116537 255 36 + PolA 116677 2.25 37 - PolA 116749 2.25 37 - 1 CDSo 116775 - 116888 -0.20 116775 - 116888 114 38 - PolA 117635 2.25 38 - 1 CDSl 117739 - 118035 26.10 117739 - 118035 297 38 - 2 CDSi 119149 - 119196 16.81 119149 - 119196 48 38 - 3 CDSi 119417 - 119578 10.73 119417 - 119578 162 38 - 4 CDSf 119686 - 119898 2.62 119686 - 119898 213 39 + 1 CDSf 121438 - 121562 5.13 121438 - 121560 123 39 + 2 CDSl 121953 - 122049 7.68 121954 - 122049 96 39 + PolA 122246 -0.55 40 - PolA 122267 0.75 40 - 1 CDSl 122488 - 122531 0.86 122488 - 122529 42 40 - 2 CDSi 122818 - 122899 11.44 122819 - 122899 81 40 - 3 CDSi 123482 - 123566 13.58 123482 - 123565 84 40 - 4 CDSi 125254 - 125342 8.58 125256 - 125342 87 40 - 5 CDSf 126042 - 126059 0.42 126042 - 126059 18 41 - PolA 126259 0.75 41 - 1 CDSl 126401 - 126550 -0.13 126401 - 126550 150 41 - 2 CDSi 126632 - 126706 13.03 126632 - 126706 75 41 - 3 CDSf 127614 - 127787 25.88 127614 - 127787 174 42 - PolA 128435 -0.55 42 - 1 CDSl 128585 - 128768 8.90 128585 - 128767 183 42 - 2 CDSf 128807 - 129258 28.65 128809 - 129258 450 43 + 1 CDSo 129290 - 129511 10.81 129290 - 129511 222 43 + PolA 129595 0.75 Predicted protein(s): >FGENESH: 1 1 exon (s) 344 - 427 27 aa, chain + MNFVIVKDVLLFSYMRSLYHSRCRWKT >FGENESH: 2 1 exon (s) 929 - 1066 45 aa, chain + MGRGVVPYRLQETRVVDYFVILKKEFPRCLLFVLGHKHRLNYTVE >FGENESH: 3 1 exon (s) 6118 - 6231 37 aa, chain - MTPTLSCSIYQLSTKVEKVKFLPSKSKGFLVVPPSGH >FGENESH: 4 2 exon (s) 6606 - 7819 74 aa, chain - MQSTFVIFYNLLHRHLTQFPPHHFAKSNAHTKAMYNTSSTPIMSPKELPSPRIIKEIMEM HKYTTCLIGYRIIV >FGENESH: 5 1 exon (s) 8472 - 8627 51 aa, chain - MRGFCLLMVILLVSYATLSTGSIVDIFFLKSPHMVTEGPSIPIKSEQSPSF >FGENESH: 6 1 exon (s) 8673 - 8789 38 aa, chain + MNDTNLIGGATIASAGAAIGIGNILSSLIHSLARLRHW >FGENESH: 7 1 exon (s) 9543 - 9833 96 aa, chain + MNLRKISSLYNDDWVPQNTLSIFRKHPAYYLMLAQTLGNRTKLVPNSHHFYSASSTYIYQ KLKNSVILSIPYLLALMELYSLGYAVIFPGLTVIKE >FGENESH: 8 2 exon (s) 10737 - 11225 66 aa, chain - MDVHPMHCADHTHTFVYRYQLDYQSIITSLYFAANKALKNPYQNRFISKGSQSTTFPTKS LKKWIN >FGENESH: 9 1 exon (s) 16988 - 17098 36 aa, chain - MPGVVVVDRPTSVLRNSMNSLSNFWVLANLESSDFF >FGENESH: 10 1 exon (s) 19879 - 20175 98 aa, chain - MAYELVCGSFQCLLVFGILHMPYHGMCEGQRTVKSTLIVHLGRVVLAQVHSPSPGPSGGL CGLMSRRGLFSLGYTSLPMPHEMLHVPPLFIWNEPLLR >FGENESH: 11 2 exon (s) 24655 - 24915 35 aa, chain - MYLSRLKEHFTSNYLVAYSCEKLCEVSMKPIYEDR >FGENESH: 12 3 exon (s) 25107 - 26273 148 aa, chain - MDFINISYANNLFLPNYVQYSLQPSAGESRLKVRAKLISDFAYNFKRQSHIEQIFNTWPK IPQDGKIVHSLRFIMRKIQTLKDFTARHYVGLCEISNFPSLFRCIHRQIYDILQLQFKTE CSRTTCCLKLLYTPLVVRLNEFMNEILC >FGENESH: 13 2 exon (s) 26316 - 26721 82 aa, chain + MTPNYKDREMEYFRSREEDSSKSGTKIEITFFRGKKSNINVGGGTGASAQSFETLTLMNQ VTMSVSSIYKCLLTSNFGPSQY >FGENESH: 14 2 exon (s) 28804 - 29471 106 aa, chain + MLSSRGTQQRIIPRAITKIQQRLKQRKTGILSSSSRVPFKSAHRRRQNNSGYHILSVWVT FSASIFDHRSWSSSSARKIFFSLSLSLFAARNKECLPTSPSVLKQL >FGENESH: 15 1 exon (s) 30985 - 31110 41 aa, chain - MRESKRDKEICIQIRFLTAWTGIWTNFILGHFRPFQWYMRN >FGENESH: 16 1 exon (s) 34767 - 35336 189 aa, chain + MQALPYQNLPNYRQVPSHCIIKKKPSSIFNTLVEREAQLFERLKLAGLIQTIDLENINVK SNLYTPDLHCSYCSRGFGHITKDYMNLKHRFKTLKIKKVVTPNVNSNLIPNYGGMTKNVI KVEEDSYIEKVIISTNIEKIEQVLVHPIKKKKFKFVIMIPHQAFAWVPKEGQNKNEIDQA FPKSLPHSY >FGENESH: 17 1 exon (s) 37736 - 37894 52 aa, chain + MDHNLYPTNGLLSFYRHIFINTILTVDQNYYPTNALSSSSYRHIPILSYLRI >FGENESH: 18 1 exon (s) 42793 - 42960 55 aa, chain - MKHMFIDINLGDSKPLRITPCDWYQGLVKNSWDLIVADLTAGVFATAETTNCGGY >FGENESH: 19 3 exon (s) 46522 - 47162 78 aa, chain + MENHEIMKQLGYLVGICNGVFLWIQRKRTKVLVSNNRVNRKIFASFLALCRIWSRFETLK WSLVKSTMLRSRKFVGYW >FGENESH: 20 2 exon (s) 47927 - 48645 58 aa, chain - MIPFLCKNYKLAWVLRYLFPQVYRLWNQVGRCRLWNQHQSCVSLNHSSLLYQRIGHTL >FGENESH: 21 2 exon (s) 55329 - 56084 98 aa, chain + MPLWFFTLVGGLLTRVHRLLMAYGGLHVLMSENVSFSLFTRDSPHPVNGPVVHHFLLGMI NWQVDRPWFLSLLWLTNFLLFSAVKKDQHLGLERMGEE >FGENESH: 22 2 exon (s) 56654 - 57505 51 aa, chain + MLWRIQKEEQIDYQVNQLLTLGFQKKQILGDSSFIITFQDVEVWSKNAILE >FGENESH: 23 2 exon (s) 58915 - 59509 111 aa, chain - MDMKNYYNRIQKKYQPIFIIDVRNTDKRFSYLDGLGELSIKLVETKKNLNYQLIFLLVKF VLVLPVAIAIVERDFSAMKYVKNDLQNRMDDEFLDGCIVPYEEKKIFCTIF >FGENESH: 24 1 exon (s) 65853 - 66008 51 aa, chain - MVILTITYITNNLLKRLERCAQFILKKYYDTVATYGILHKSNIDHQNKDNS >FGENESH: 25 2 exon (s) 66789 - 69440 514 aa, chain - MASAMTCSAAELFPHLGSSANATAAAEFICSRFSAVSEYLTNTTYAVDTTYLLFSAYLVF AMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGKHFFG LKEFPSQAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWF WSGDGWASASKTDGNLLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRSGRSV ALRGHSASLVVLGTFLLWFGWYGFNPGSFLTILKSYDHTIRGTYYGQWSAIGRTAVTTTL AGCTAALTTLFCKRLLVGHWNVVDVCNGLLGGFAAITSGCAVVEPWAAIVCGFIAAWVLI GFNALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKKEYVNEVYPGFPNRPYGLFMGGG GKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHGGFAYIYHD EDEGSSMPGFKMTRVEPTNTSTPDHQNRSVNVVV >FGENESH: 26 3 exon (s) 75635 - 76496 220 aa, chain - MKCSVCKTFRHNKKGCPTLKNVAAGTSDASDRTSNVAIGTSCAGPSESPREVPCAGQSAG PRAVPRAGPSGPREVPCADPSVGSRAVLSEGPREVPCASPRAVPSEVAREVPCAGPREVP SFTQQSTSSATSQKRKTDTALRGDASLAYEKPRQNKRRQLVMSENTDRVLHSATLTSSTS TNIDLGYKLKGLRWKGRAAITQRQLREESYRSTQGTQGTH >FGENESH: 27 1 exon (s) 77933 - 78226 97 aa, chain - MNNIEFKEALQTYSIKKGVNIKLKPNEKERVRAHCKKKGCPWHILGSIDGNIGNFSVKTY FSVHKCFKRTRNKLCNSIWISKHYKERIMSEPTIKLH >FGENESH: 28 2 exon (s) 78310 - 79191 180 aa, chain - MALTIVTLQFHYGGCFVSDSTLRADFSSSPQIDWVDVSSSQPFTEKENMDLNQNQSPLIE EQPPLVEEQDPAPRVEEHFYSDSLYDVDENIDDLSDQDEDFLQARQFNIQEQVKEKTDRV NLDEIPSGPVGIDVGVEDIYKERRDRFEGNLGGDDPFFDSSDLCSDTSEDEGNLLGMMKW >FGENESH: 29 3 exon (s) 82970 - 97554 128 aa, chain - MVPHSVLASIGSVRLTHRQPACGPTLESWWLCLTSTSHLKAHEGLCGPPYWLVVNCGHTT WGVDQTTVLQRIYYVSAMDPSTPRHWDHARGGACFPTLEPYWLCLASTSHSTTRVGSTTI ERFWGSSY >FGENESH: 30 2 exon (s) 99818 - 100496 48 aa, chain - MSNLLYGYKIMLARLQQTTHTLFKTICSHLSNKCQGYKQSSDDHSLFT >FGENESH: 31 2 exon (s) 100617 - 100865 58 aa, chain - MEKHYDATDILVTPLGIYFLSHHLESLEKNYVHIPDTFMQEATQVIVPSDLPLRLLQR >FGENESH: 32 2 exon (s) 105995 - 107162 62 aa, chain + MARQGMKGELIPYFKSPPTMLYCLSQSSSFFLLPSFGKKVVSDIKRVGALKKIIAKIKKI MT >FGENESH: 33 2 exon (s) 110644 - 111248 82 aa, chain - MAPNINYGFKRFLNHLGTLKHYFCEGWVVLSGSKFLSSLSCKVEIQEDCLCIGYIIRLKN AKLLGEPSSRYFHAPTQGLNFF >FGENESH: 34 4 exon (s) 111686 - 112277 131 aa, chain - MIKTGKLLSASPVSGVDVEEFKQQTRMFKVLNVYPKTISLQFGDLQVELTSGKAYTGAAI AFIFSFLSWELGQGIQSIPESSLQYANDNALLLAKSLRASLLVMSYSSTVLAAFAMVGLI LLGGQLKSENK >FGENESH: 35 2 exon (s) 115459 - 116161 142 aa, chain + MIFKNFQDTTLGFSSCLLKCSFSIPHIPSNSSYVISEVHATNSSNARQNLCWNSLLLGGS RKGLGLFVVTLMSLDSFMRDLQAIPHLSEGFVELIGSWWVSFDVQGSPDFIFASTLKLLK GKNGTSIPLGTFTPIIRHSLEF >FGENESH: 36 1 exon (s) 116283 - 116537 84 aa, chain + MALWLQQGYNNTSLSINWQCTLKIQTRTPWLSMGKQSLKWGQLSTKYFQIIPPFTGIQEC GLVVNEVVETSKVLASKHSRDKKT >FGENESH: 37 1 exon (s) 116775 - 116888 37 aa, chain - MIFQHFLKNPIVNPSISGALFPIKSLVTLPPSKRNIR >FGENESH: 38 4 exon (s) 117739 - 119898 239 aa, chain - MASSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDS PKSLEPNPQTLESFVLPADFFSQLPSDLRLDVSSSWNLELLCKIIWKWFHYIYACWLVSS DPCGLLNDAAFDLSNGPVKVECGEEVGETLLNISRAWEMADTSTSTALVDKLPLLVGSLT GSQKSGKKKPTTMILYFLPCTSKLSSFFHLNFILILVSIWKALVISWKKVPVHGTIWRR >FGENESH: 39 2 exon (s) 121438 - 122049 73 aa, chain + MVQWKCSIQNKHYFTELDLHYHIPKLAPGGRKVESPLHSNKICVPNLDGNAKGLRQLSPP YNEVLGFKFSLDE >FGENESH: 40 5 exon (s) 122488 - 126059 105 aa, chain - MSLDRKVTKVMARTASADIVCVDSKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGDII RALVLSLGDARAYYLSTAKNELGVVSAESAADIKHRTLSNKHHTE >FGENESH: 41 3 exon (s) 126401 - 127787 132 aa, chain - MAMEAETQELVTPGQVLGKASQLKAGKGAYVSTENGTVYASLTGFRSLIPPHSDAVDQRS TVEVTGHKAHGAVPKPGSVVFARLFLEYDNTVITLSSSACPSVKHCFLSQRLSVCKNSYN MIVFIFFLFENF >FGENESH: 42 2 exon (s) 128585 - 129258 211 aa, chain - MWGKLECRHLVEKITSWIKHTYAYKLSYAIHSFWGSVFILPQSVVKEVNKKYREYLWGSN EVKMKVSLVSWEKVCFPKRQGGSNIKGCGKWNVASDGKLQWQLAMRKESLWMKWVHGICI KAYTIWSHKALADSSSYWRNIIFLKDKMQHWYSIRSGYHDLIGNQDKLEVAALVWNSVSL PRQMIIMWLAMQKQMAYKGKTTKYGNKCRRQ >FGENESH: 43 1 exon (s) 129290 - 129511 73 aa, chain + MGKTPWVNPVTTTSYSFISPITPAKKKLDLSMLATSPVVAFKCSKASIILEVHLISHYRR SSSHHLQKSGDSI